Typing tool
|
Complete norovirus genomes
MT364242 | GII.6 | ||
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GII.P7 |
ORF1: 1..5092 ORF2: 5073..6716 ORF3: 6716..7492LOCUS MT364242 7492 bp RNA linear VRL 18-MAY-2021 DEFINITION Norovirus GII isolate 085_GII.P7_GII.6_Araguaina nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MT364242 VERSION MT364242.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7492) AUTHORS Luchs,A. TITLE Whole genome characterization of Brazilian Human Norovirus strains in stool samples through next generation sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 7492) AUTHORS Luchs,A. TITLE Direct Submission JOURNAL Submitted (21-APR-2020) Virology, Adolfo Lutz Institute, Av Dr Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao Paulo 01246902, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 9 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7492 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="085_GII.P7_GII.6_Araguaina" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Brazil" /collection_date="05-Jun-2015" /note="genotype: GII.P7_GII.6" gene <1..5092 /gene="ORF1" CDS <1..5092 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QJC72252.1" /translation="KMASNDATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKKM LGAVPKGTKAPSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTTV QNEHENTPYTVPPLSEREHKPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPA AISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLEL NDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDL LGKLKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQG PEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKW FFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARK LSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMA RHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELA DTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPE IEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLT ARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKSV KTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALL RLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRYCWERWVKPTETQEMIASEKE VALLTFWFEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYS IEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGS DIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGC PYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGK PPRPVVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGE SFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM IRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQ QRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQW NSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYG LVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHE NPYESMVPHSQRATQLMALLSEASLHGPQFYKKVSKMVINEIKGGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPEGVNEDGVE" mat_peptide <1..1000 /gene="ORF1" /product="p48" mat_peptide 1001..2098 /gene="ORF1" /product="NTPase" mat_peptide 2099..2617 /gene="ORF1" /product="p22" mat_peptide 2618..3016 /gene="ORF1" /product="VPg" mat_peptide 3017..3559 /gene="ORF1" /product="Pro" mat_peptide 3560..5089 /gene="ORF1" /product="RdRp" gene 5073..6716 /gene="ORF2" CDS 5073..6716 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QJC72253.1" /translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD IRNRFFHYSQGNTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVHVQHGRCTLDGTLQGTTQ LVPIQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG QPTRFTPIGMGADDWNEWELPEHYGHFTLNMNLAPAVAPAFPGERILSFRSVVPSAGG YGSGHIDCLIPQEWVQHFYQEAASSEAAVTLIRYVNPDTGRNIFEAKLHREGFITVAN SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ" gene 6716..7492 /gene="ORF3" CDS 6716..7492 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QJC72254.1" /translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST HSTALTAGSSSSRTTSSSAAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHMRRRGESQI" ORIGIN 1 gaagatggcg tctaacgacg ctaccactgc ctttggcagc caaaactctg tcaatgacag 61 tatcaacacc gccccttcta acaaagaaga ggttggtgca ttctccaaca tcaaagttgg 121 ttttaagaag atgctgggtg ccgtccccaa ggggaccaaa gcacccagta gtgatcagca 181 ctgcccctca gttaagatcg ggaccaagac attaacagtt ccccctgagc ccccaaatgg 241 tgaagacacc gtgcagtttg atgcgaagtc ggaaactgtg cgcgggttac cagacttgac 301 aacggtgcag aatgaacacg aaaacacacc atacactgtc cccccattga gtgaaaggga 361 gcacaaacca gctactgaac cgcttcctgg cacaatactg gagatgtggg atggtgaatt 421 ctaccattac tctgtgtacg tcagcggtgg caaagcccta ggggttcaca agccccctgc 481 agcgataagc ctcgcgacga tagagctcac acccatatct ctttattgga ggcccgttta 541 cacccccaac tatctggtct gcccagacac gttgaagggc cttgctggtg agaagttccc 601 ctacacggcc ttcagcaaca actgttacaa cttctgttgc tgggtgcttg agctcaatga 661 cacatggctt agtaggagaa gcatctctag aaccaccggc ttcttcaaac cataccaatc 721 ttggaatagg aaaccccttc caaccgttga tgatggaaag atcaaaaagg tggccaacgc 781 aattctctgt gcacttgggt cactgttctc aaaaccaatc aaggacctat tgggcaagct 841 taaaccattg aacttgctgc acttgctcgc atcatgtgac tggacgtttg cgggtatagt 901 agagacagtc atcctaatgg cggaactttt cggcattttt tggacaccgc cagatgtttc 961 cagtttcata gcctccctga taggtgattt tgaattgcaa gggcctgagg acctggctgt 1021 ggagcttgta cccgtggtca tgggtggcat aggaatggtt ctcggcttta ctgctgagaa 1081 gataggccgc atgctatcgt ccgctgcatc aacactacgg gcgtgcaaag acttggggaa 1141 ttatgctctt gacatattaa aactagttat gaagtggttc ttcccaaaga aagaagagaa 1201 agccgagatg gagacactaa gggcgattga ggatgccgtc ctggacatgg aagctatagg 1261 aaataaccat ctcacaaccc tcctcaagga caaggatagc ctcacggctt tcatgaagac 1321 tctagaccta gaagaagaga aggcaaggaa gctgtccacc aaatcatcct cgccagacat 1381 tgtcggcacc attaatgcca tactagctag aatagctgct gccaggtccc tcttgcacaa 1441 ggctaaagaa gaaatgttta gcaggatcag acccgtggtt gtcatgatct cgggtagacc 1501 tggcattggc aaaacccaca tggcaagaca cttggctaag agtatcgcca acaccatgag 1561 cggcgaccag agagtggggc tcgtcccacg caacggggtt gatcattggg acgcctacag 1621 gggagagagg gtggttttat gggatgatta tggcatggga aaccctgtca aagacgccct 1681 aacactgcaa gagctggccg acacctgccc agtaactcta aattgtgata ggattgagaa 1741 caaggggaag atgtttgaca gtgatgtcat cataatcacg accaatttag tcaacccagc 1801 gcccctcgat tatgtaaact tcgaggcatg ctccagaagg gtcgactttt tggtctatgc 1861 agagtcacca gaaattgaga aggttaagag agactttccc ggccaacctg acatgtggaa 1921 ggaccatttt aagccagatt tttcccacat aaaactgact ctagccccac agggtggatt 1981 tgacaagaat ggcaacaccc cgcatggtaa gggcaccatg cgatccctaa cccagggatc 2041 cctgactgca agggttgcag gtcttgttca cgagagaaga gacgagtttc agctccaagg 2101 gaacgacctt caaacatata actttgatac caacagagtc tctgcattta ggaagctggc 2161 cgcagacaac aagtatggga tcatggagac tatgagagtg ggcacagcgc ttaagagtgt 2221 caagaccttg gaagatctga aagttgcact gagggatgtg aagttcaatg agtgtgagat 2281 aatttacaga aactccaaat accgagtctc ttccaatggt aaaggttctg tctctgttga 2341 caaagttgag gaccaaacat cccagactgc aaacgaagtg ggtgcagcac tccttagact 2401 cagacaggca agagccagat actatgtcag ctgcttccaa gacctcgttt acactctaat 2461 acaagtcgcc ggagcatcat tcgttgtcaa caggatctcg aaaaggtact gctgggagag 2521 atgggtcaaa ccaaccgaaa cccaggaaat gattgcatcc gaaaaggaag ttgcccttct 2581 taccttctgg tttgagccca aggacacaga accagaaggt aagaagggta agaacaagaa 2641 aggaagaggc aagaaacaca cagctttctc cagtaaaggc ctgagtgatg aggagtatga 2701 cgagttcaag agaatcagag aagaaaggaa cggaaaatac tccattgagg aatacctgca 2761 agaccgggat cgctactatg aggaagtggc ggttgcccgg gcgacagagg aggacttctg 2821 tgaagaggag gaggccaaga taagacaaag aatctttcgc cccacaaaga aacagaggaa 2881 ggaagaaagg ggggtgcttg gtttggttac tggctcagac atcaggaaga gaagaccaga 2941 cgattttcaa ccgaagggca acctgtgggc agacgacacc aggagtgtgg actacaacga 3001 gagacttgat ttcgaggctc ccccgagtgt ctggtcaaga atagtcccat tgggcactgg 3061 ctggggcttc tgggtctcat caaacctcct gatcacaaca acgcacgtcc tacctaaggg 3121 gattaatgaa ctcttcggag ttgagatcaa acagattcag attcataagt ctggagagtt 3181 ctgcaggttc aggttcccaa gaccaattag accagatgtc acagggctcg tgttggagga 3241 aggcgctcca gaaggcactg tctgctctat actcgtaaag agacctacag gtgagatgat 3301 ccccctggca gtgaggatgg gcacgcatgc atccatgaaa atacagggta ggaccgtcgg 3361 tggtcagatg ggaatgctcc tcacaggggc aaatgcgaag aacatggatc ttggcaccgg 3421 tcctggtgac tgcggttgcc cttacatcta caaacgtggc aatgatatag ttgtcgcggg 3481 tgtccacacc gcagcagccc ggggaggcaa cactgtcata tgtgccactc aagggcaaga 3541 tggggaagca gtccttgagg gaaatgagaa ccttggcact tactgcggtg ctccaatctt 3601 gggtccaggc aaggcgccca aacttagcac gaagaccaag ttctggcgtt catcaccaga 3661 cgctttgccg ccaggcactt atgagcctgc ctacttggga ggtaaggacc ctagagtgga 3721 aaaaggacca tccctgcagc aagtcatgag ggaccagcta aaacctttca cagaacccag 3781 gggtaagcca cctagacctg tagtcttaga agaagccaaa aagacagtga tgaatgttct 3841 agagcaaacc attgaccctg ctaaaccgtg gacctattcc caagcatgcg cctcactgga 3901 caagaccact tccagtggta gcccccatca tgtcaggaaa aatgaccatt ggaatgggga 3961 atccttcact ggccccctcg cagaccaagc atccaaagcc aacctcatgt acgagcaggc 4021 caaacatgtg cagcccgtgt acacggccgc acttaaagat gaactagtca aaactgacaa 4081 gatctacaag aagataaaga aaaggctctt atgggggtcg gatcttggta caatgatcag 4141 gtgtgccagg gcctttggcg gtctcatgga tagcatgaag gcaagctgca tagccctccc 4201 atgtagggta ggaatgaaca tgaatgaaga tggccccatc atatttgaca agcattctaa 4261 gtacaggtac cattatgatg ctgactattc caggtgggac tcaacccagc aaaggagcat 4321 tctctcggcc gccatggaag tgatggtgcg gttctctgct gaaccagagc tggcacaagt 4381 ggttgcagag gacctcctgg cacccagcca actagatgtt ggcgatttcg tcatctcagt 4441 ccaggagggt ctgccatcag gggtcccatg cacatcacaa tggaattcaa tagcacactg 4501 gatcctaacc ttgagtgcaa tggcagaagt atcgggtctc tcaccagatg ttgttcaagc 4561 ccactcctgt ttctcattct acggtgatga tgagatcgtc agcactgaca tcaaccttga 4621 tcccatgaag ttgacacaga agctcagaga gtatggcctg gtccccaccc gacctgacaa 4681 aactgagggt cccctcgtga taactgaaga tctcaccggc ctaacgttcc tgcgtaggtc 4741 aattgcacgg gacccagctg ggtggtttgg aaaattggac caagactcaa tcctcagaca 4801 gttgtattgg acaaggggcc ccaaccatga gaacccatat gagagcatgg tccctcattc 4861 ccagcgggcc acacaactca tggcccttct cagtgaggcc tcactgcatg gtccccagtt 4921 ctacaagaaa gttagcaaga tggttattaa tgagatcaaa ggtggtggtc tggaattcta 4981 cgtgcccaga caagaggcca tgttcagatg gatgagattc tctgacctca gcacatggga 5041 gggcgatcgc aatcttgctc ccgagggtgt gaatgaagat ggcgtcgaat gacgctgctc 5101 catcgaatga tggtgctgcc aacctcgtac cagaggccac caatgaggtt atggcacttg 5161 agccggtggt gggagcctca attgctgctc ccgtcgtcgg tcaacaaaat ataattgacc 5221 cctggattag agaaaatttt gttcaggcac cacagggtga gtttactgtt tcaccaagga 5281 actcacctgg tgagatgctt ctaaatcttg aattaggccc tgagctcaac ccttatctga 5341 gtcacttgtc ccgcatgtat aacggctatg ctggtggtat gcaggttcag gtggtcctag 5401 ctgggaatgc gttcacagct ggtaaaatca tctttgccgc cgtcccacca catttccctg 5461 ttgagaacat tagtgcggcc caaatcacaa tgtgccccca tgtaattgtt gatgtaagac 5521 agcttgagcc agtgcttttg cccctccctg acataaggaa tagattcttt cattatagtc 5581 agggaaatac cccccggatg agacttgtgg ctatgttgta tacacccctt agagcaaatt 5641 ctggtgagga tgtgtttacg gtgtcttgca gagtcctgac ccgccctgcc cccgactttg 5701 agttcacgtt tttggtgcca ccaactgtgg agtcaaagac taagcccttt acactcccta 5761 ttctgactct tggagagctg tccaactcca gattccccgc tccgatagac atgttgtaca 5821 ctgaccccaa tgaggcaatt gtggtgcatg tacaacatgg caggtgcact ctagatggaa 5881 cacttcaagg gaccacccaa ctggtaccca tccaaatttg ctccttcagg ggcacgctaa 5941 ttagccagac gtcgaggtct gcagattcaa cagattcagc cccacgggtg aggaaccacc 6001 ctctccacgt tcagctgaag aacctcgatg ggacaccata tgacccaaca gatgaggtgc 6061 cagcagtttt gggtgccata gatttcaaag gaactgtgtt tggggtcgct agccaaagga 6121 acaccacagg gaactctata ggagcaaccc gcgcccatga agtgcacata gataccacaa 6181 accctagata caccccaaag cttggctctg tgttgatgta ttctgaatct actgattttg 6241 atgatggaca acccacccgc ttcaccccca ttggcatggg agccgatgat tggaacgagt 6301 gggaattgcc tgaacattat ggtcacttca ctcttaacat gaatttggcc cccgcagtcg 6361 ccccagcttt ccctggtgag cgtattctct ccttcaggtc agtggtgcca tctgctggtg 6421 gctatggatc aggtcacata gattgcctca taccacaaga atgggttcag catttctacc 6481 aggaggccgc ttcatcagag gccgcggtca ctcttatcag atatgtcaac cctgacactg 6541 gaagaaacat ctttgaggca aaattgcata gagaagggtt catcactgtg gcaaattctg 6601 gaaacaaccc catagttgtg cccccaaatg gttacttcag gtttgaggcc tgggtcaatc 6661 aattctacac actcaccccc atgggaactg gacaggggcg cagaagagtt caataatggc 6721 aggagctttc ttagctggat tggcaggtga cgccataaca agtggtgtcg ggtccctaat 6781 caatgctggg gccaatgcaa ttaaccaaaa ggtagaatat gactttaata aacagctcca 6841 attggcatcc ttcaaacatg acaaagagat gctgcaatca caagtactgg ccactaaaca 6901 gctccagcag gagatgatga acataaggca aggggtcttg tccgctggcg gcttttcccc 6961 tacagatgcc gcgagaggtg ctgtgaacgc gccgatgaca aaaattttgg attggaatgg 7021 aacaaggtac tttgccccaa atagtatgaa gacaaccagt tattcgggcc agttttccag 7081 caaccctgtg cataggcaac ccactttacc ccgttctgaa cccccaaaaa ttaaggttaa 7141 tagtgattct gctagtgtgt atagttctgc atctactgct ccttcacaat caactcactc 7201 aacggctttg actgcggggt ctagctcatc taggacaaca tcctcttctg cagcagcttc 7261 caccctatct aggactagtg actgggtgag aggacaaaat gaaaggctta gcccgtttat 7321 ggatggtgct ctccaaacaa cttttgtcac accaccctcg agcaaggctt catcatatgg 7381 gtcggtctca accgttccca aagctgtttt ggactcctgg actcctatgt tcaataccca 7441 taggcagcct ctcttcgctc atatgcgcag gcgaggggag tcacagattt ag //