Typing tool
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Typing tool
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Complete norovirus genomes
| MT357996 | GI.6 | |
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| GI.P11 |
ORF1: 5..5371
ORF2: 5355..6977
ORF3: 6977..7606
LOCUS MT357996 7696 bp RNA linear VRL 25-APR-2020
DEFINITION Norovirus GI isolate Hu/US/2018/GI.6[P11]/CS0036, complete genome.
ACCESSION MT357996
VERSION MT357996.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7696)
AUTHORS Randazzo,W., Houston,K., Montmayeur,A.M., Tatusov,R.L., Chhabra,P.,
Browne,H., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (17-APR-2020) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 11.1.2; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7696
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="CS0036"
/isolate="Hu/US/2018/GI.6[P11]/CS0036"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="07-Apr-2018"
/note="genotype: GI.6[P11]"
gene 5..5371
/gene="ORF1"
CDS 5..5371
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QJC14597.1"
/translation="MMMASNDAVATNVASNNNANNTSATSRFLSRFKGLGGGASPPNP
IKIKSTEMALGLIGKTAQEAVGASDLPPKQQRDRPPRTQEEVQYGMGWTERPVDQNVK
SWEELDTSTKEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVRWSARDGVNL
GVNRLTTVSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTV
GVHSPQAAFSVARVTIQPIAAWWRVCYIPQPRHRLSYDQLRELENEPWPYAAITNNCF
EFCCQVMNLEDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGL
VSQPFKNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASL
LPDFHLQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLE
IFSLLKKYFFGGDQTERTLKGIETAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEE
EKARKLSAKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIG
KTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNK
LQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVY
CSAPEVEQVRRVSPGDTSALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGVMKPTT
INRLLIQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLR
GVTSMDGLKNALKGYKIGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCTAS
IALTRLRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKE
HKCRVHQAKAAGKGPIGHDDMVDKYGLCETEEDEEVVHTEIPSATMEGKNKGKNKKGR
GRKNNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDG
GIGETEMEIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDER
EVDYNERINFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASI
AIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIA
SMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKS
GNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVY
EPAYLGGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMD
TPVPWSYSDACQSLDKTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSM
KPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPI
KVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELAS
VVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDV
IQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLV
FLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLISLLGEA
SLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVN
DDGV"
mat_peptide 5..1201
/gene="ORF1"
/product="p48"
mat_peptide 1202..2290
/gene="ORF1"
/product="NTPase"
mat_peptide 2291..2887
/gene="ORF1"
/product="p22"
mat_peptide 2888..3301
/gene="ORF1"
/product="VPg"
mat_peptide 3302..3844
/gene="ORF1"
/product="Pro"
mat_peptide 3845..5368
/gene="ORF1"
/product="RdRp"
gene 5355..6977
/gene="ORF2"
CDS 5355..6977
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QJC14598.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 6977..7606
/gene="ORF3"
CDS 6977..7606
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QJC14599.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAIPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctgt tgcgactaac gttgcaagca ataacaacgc
61 taacaacact agtgctacat ctcgattttt gtcgagattt aagggtttag gtggtggcgc
121 gagcccccct aaccccataa agatcaaaag cacagaaatg gccttgggct tgattggcaa
181 gacagcccaa gaggcagtag gtgccagtga cctaccgccc aaacagcaaa gagatcggcc
241 ccccagaacc caagaggaag ttcagtacgg catggggtgg actgaaaggc ccgtggacca
301 gaatgttaag tcatgggagg aacttgacac ctccaccaag gaagagattt tggacagcca
361 caaagaatgg ttcgacgccg gcggtttggg cccgtgcacc atgccttcaa cttgtgaaca
421 ggccaaagat gatagcccac ctggtgagca agtcagatgg tcagcgcgtg atggagtcaa
481 ccttggagtg aaccgtctca cgacggtgag tggccccgag tggaacctct gccctctacc
541 ccccattgac ctaaggaata tggaaccagc cagtgaaccc accattggag acatgataga
601 gttttatgaa ggccacatct accactactc catatacatt gggcaaggga agacagttgg
661 tgtgcattcc ccacaggcag cattctcagt ggctagagta accatccaac ctatagctgc
721 ttggtggagg gtctgttata taccccagcc cagacataga ctgagttatg accaacttag
781 ggaattggaa aatgaaccct ggccatatgc agctatcacc aacaattgtt ttgagttttg
841 ctgtcaagtc atgaaccttg aggacacatg gttgcagagg cggctaataa catcaggtag
901 attccaccat ccttcccagt cttggtcaca acagaccccc gaatttcagc aggacagtaa
961 actggagctg gttagggatg ctatattggc cgcggtgaat ggccttgttt cacaaccctt
1021 caagaatttc ttgggcaagc tcaagcctct taatgtatta aacatcctat ctaactgtga
1081 ctggactttt atgggggtgg tagagatggt tatactactt cttgagctct ttggcgtgtt
1141 ctggaacccg cccgatgtgt ctaattttat agcatctctc ctccctgact tccacctcca
1201 gggaccagaa gacctggccc gggatttggt gccagtcatt cttggtggca taggactagc
1261 cattggattt accagagata aagtcaccaa ggtcatgaag agtgctgtgg atggactccg
1321 ggccgctaca cagctggggc aatacgggtt ggaaatattc tcactcctca agaagtattt
1381 ctttggtggg gaccagactg aacgaaccct caaaggcatt gaaacagcag tcatagatat
1441 ggaggttttg tcctctacat cagtgacaca attggtgaga gacaagcagg cagctaaagc
1501 ttacatgaac atcctggata atgaagagga aaaagctagg aaactctctg ctaagaatgc
1561 tgacccccat gtaatatcct caacaaatgc cctaatatca cgtatagcca tggcgcgatc
1621 cgctctggct aaggctcagg ctgagatgac cagccggatg aggccagttg tcatcatgat
1681 gtgtggtccc cctggaattg gtaagactaa agcagcggaa cacttggcaa aacgcctagc
1741 taatgagatc aggcctggcg gcaaagtggg actggtacca cgtgaggctg ttgaccactg
1801 ggatggctac catggtgagg aagtgatgct atgggatgac tatggcatga caaagataca
1861 agatgactgc aacaagctcc aggctattgc tgactctgcc ccactcactc tcaattgtga
1921 taggattgaa aataaaggga tgcagtttgt gtcagatgca atagtcatca ccaccaacgc
1981 tccagggcct gcccctgtgg actttgtcaa ccttggccct gtgtgtagac gggttgactt
2041 cctggtctac tgttccgccc cagaggtaga gcaggtaagg agagtcagcc ctggagacac
2101 gtcggcactt aaagactgct tcaagtcaga tttctcccac ctgaagatgg agttagctcc
2161 tcaagggggg tttgacaacc aggggaacac accatttggc aagggtgtca tgaaaccaac
2221 aaccattaat aggctcctca tacaagctgt ggctctcacc atggagagac aggatgagtt
2281 ccgtctccaa gggaagatgt atgattttga tgatgatagg gtgtcagcct ttaccaccat
2341 ggcacgcgat aacggattgg gcatcctgag catggcgagc ctaggtaaga agctgcgcgg
2401 tgtcacatca atggatggcc tgaagaatgc tttgaaaggg tataaaattg gtgcgtgcac
2461 aatcaagtgg caggccaagg tgtattcact agagtcagat ggcaacagtg ttaacatcag
2521 ggaggagaag aatgtcttga ctcaacaaca gcagtcggtg tgcaccgcct ctattgcact
2581 cacccgcctg cgggccgcac gcgcggtggc gtatgcgtca tgcattcaat cagccataac
2641 ctccatacta caaattgctg cctctgccct agtggtcaac agggccgtga aaagaatgtt
2701 tggcacacgc actgctgctt tgtctctaga gggccccccc aaagaacaca aatgcagagt
2761 ccaccaggct aaggccgcag gaaaagggcc cattggccat gatgacatgg ttgataaata
2821 tggcctatgc gagacagagg aggatgaaga agtagtccac actgagatac catctgccac
2881 catggaaggt aagaacaaag gaaagaacaa gaaagggcgc ggccgaaaga acaactacaa
2941 cgccttttcc cgtagggggc tcaatgacga agagtacgag gagtacaaga aaataaggga
3001 agagaagggt ggaaattaca gcattcagga gtacctagag gatagacaaa ggtatgaaga
3061 ggagcttgct gaggttcaag caggtggaga tggaggaatc ggtgaaactg aaatggaaat
3121 ccgccacaga gtgttctaca agtctaagag caagaagcac caccaggaag aacgacgcca
3181 actgggatta gtcacaggtt ctgacatccg gaaaagaaaa ccaattgact ggaccccccc
3241 caagtcagca tgggcagatg atgagcgtga agtggactat aatgagagga tcaactttga
3301 ggcgcccccc accttgtgga gccgggtcac aaagtttgga tccgggtggg gcttctgggt
3361 cagtcccaca gtcttcataa ccacaacgca cgttatacca accagtgcaa aagagttctt
3421 tggtgaaccc cttgccagca tagccatcca tagagccgga gaattcaccc tcttcaggtt
3481 ctctaagaaa atcaggcccg atctcacggg tatgattctt gaggaaggtt gcccagaggg
3541 tacggtgtgc tcagtattaa taaaaaggga ctccggtgag ctactaccac tagctgtaag
3601 aatgggcgca atagcatcaa tgcgcataca gggtcgcctt gtccatggcc agtctggtat
3661 gttgctcact ggggcgaatg ctaaaggcat ggacctcgga actattccag gggattgtgg
3721 agctccctat gtctataaga gagcaaatga ctgggtggtt tgtggtgtgc acgctgctgc
3781 cactaaatca ggcaacacgg tagtgtgcgc cgtccaggct agtgaagggg aaaccacact
3841 tgaggggggt gacaaaggtc actacgccgg acatgagata atcaagcatg gatgtgggcc
3901 tgccctgtca accaaaacaa agttctggaa atcgtcccct gaaccactgc cccctggtgt
3961 ctatgaacct gcatacctcg gtggtcggga tccaagagtg agtggtggcc cctcgctcca
4021 acaggtatta cgggatcagt taaagccatt tgctgagcca cgtgggcgta tgccagaacc
4081 aggtctcctg gaggccgcag ttgagactgt gacctcatca ctggagcagg ttatggatac
4141 cccagtgccg tggagttaca gcgatgcatg tcaatcccta gataaaacta ctagttctgg
4201 ttttccccat cacaagaaga agaatgatga ttggaacggc accgccttca ttagggagtt
4261 gggagagcag gcggcgcacg ccaataatat gtacgaacaa gctaagagca tgaagcccat
4321 gtacacggcg gcgcttaagg atgaattagt gaaaccagaa aaagtgtacc aaaaagtgaa
4381 gaagcgcttg ctttggggag cagatctagg aacagtaatc cgggccgcac gggcctttgg
4441 cccattctgt gatgccataa aatcccacac aattaaacta cctatcaaag ttggaatgaa
4501 ttcaattgag gatgggccat taatttatgc agagcactca aaatataaat atcactttga
4561 tgcagactat acggcttggg actcaacaca aaataggcaa attatgactg aatcattctc
4621 aatcatgtgt cggctaactg cttctccaga attggcctca gtggtggcac aagatcttct
4681 tgcaccctca gaaatggacg ttggtgacta cgtcataaga gtgaaggaag gcctcccgtc
4741 tggcttccca tgcacatcac aggtcaatag cataaaccat tggttgataa cattgtgcgc
4801 cctctctgag gtgactggcc tgtcaccaga tgttatccag tccatgtcat acttttcttt
4861 ttatggtgat gatgaaatag tttccactga catagaattt gacccagcaa agctgacaca
4921 agtccttaaa gagtatggcc tcaaacccac ccgccctgac aagagtgaag gtccaataat
4981 tgtgaggaag agtgtggatg gcctggtctt cttacgtcgc accatttccc gcgacgccgc
5041 ggggttccag gggcgactgg accgagcatc cattgaaagg cagatctact ggaccagagg
5101 gcccaatcac tcagacccct ttgaaacctt ggtgccccac cagcaaagaa aaatccagct
5161 gatatcactg ttaggtgagg cctcattgca tggtgagaaa ttctacagga agatctcaag
5221 caaagtcatc caagagatta agacaggggg tcttgaaatg tatgtgccag ggtggcaagc
5281 catgttccgc tggatgcggt tccacgacct tggcctgtgg acaggagatc gcaatctcct
5341 gcccgaattc gtaaatgatg atggcgtcta aggacgcccc aacatcccct gatggcgcca
5401 gtggcgccgg ccagctggta ccggaggcta atacagctga gcaaatttca atggaccctg
5461 ttgcgggtgc ttcaacagca gtcgcgacag ctgggcaagt taatatgatt gacccatgga
5521 ttttcaataa ctttgtccag gcacctcaag gagaattcac tatttcccct aataataccc
5581 ccggtgatat tttgtttgat ttacaactag gaccccacct taatccattt ctagcccatc
5641 tctcacagat gtacaatggt tgggtcggca atatgcgcgt gcgcatactg ttggccggga
5701 acgccttcac agctggaaag ataatcattt gctgtgtccc ccctggtttt gatgccagaa
5761 tactcacaat agctcaagca actctcttcc cacacttaat tgctgatgta aggacccttg
5821 agcctgtgga gcttcctttg gaggatgtgc gcaatgttct ctttcacaac agtagccagc
5881 cgcagccaac aatgcgactg gttgctatgt tgtacactcc cctccgcact ggtggtggtt
5941 ccggaggcac tgatgccttt gtggtggcgg gtagggtgct tacgtgcccc gcccccgact
6001 ttagttttct gtttctagtc cccccttccg ttgaacaaaa gaccagagtt ttcagtgtcc
6061 ccaatatacc cctgaaggat ctctcaaatt cccgtgtccc tgtgccagtg cagggcatgt
6121 ttatgtcccc agatgtcaat cagtcagtcc agttccagaa tggacgctgc caaattgatg
6181 gccaactcca aggcaccact ccagtctcgc tcagccaact ctgcaagatt aggggtaaaa
6241 cttctagcaa tgctagggtg ctcaacttaa gtgaggtaga tggcacaccc ttcatcccac
6301 ttgaatcacc agcgccagtc ggttttcccg acttgggagg ttgtgactgg catgtaaatt
6361 tcactttcca ggctcaaaat caggacccat ctcaaagtgt aacctttgca actaatgatg
6421 ccagctttgt cccctatcta ggtagtatct ctcctcacaa tgggggagat tttcatgcag
6481 gtgacatcat aggtagcctt ggttggattt cagccccgtc tgataattca caacttaatg
6541 tttggacaat accaaagtat ggatctagtc tcccagatgt cacccatctt gcccctgctg
6601 tgttcccccc aggctttggg gaggtgatct tgtacttcta ttctaccttc ccaggttctg
6661 gacaatccag ccaacttcaa gtcccatgct tgttgcctca ggagtttatc acccacttct
6721 gtaacgaaca ggctcccatc gctggggagg ctgccctcct ccactacgtg gaccctgata
6781 cggggcgaaa cttgggagaa tttaaacttt accctgatgg gtttatgacc tgtgtcccca
6841 atagtgttag tagtggccct caaacccttc ctatcaatgg agtctttgtc tttgtttcat
6901 gggtatctag attctatcaa ctcaagcctg tgggaacggc ctcagcggct agaaggcttg
6961 gattacggcg catataatgg cccaagctgt catcggtgcc atagccgcat ctgccgctgg
7021 tagcatacta ggggcaggca tacaggctgg tgctgaggct ggtctccagg ctcaacggta
7081 tcagcaggat ctgcagttgc aacaaaattc tttcaagcat gataaggaaa tgttaggcta
7141 ccaagttcag gctagtaatg ctcttttagc taagaatctt aacactagat atgctcttct
7201 gcaggcaggg ggcctatcta gcgctgatgc tgctcgggca gtggctggtg ctcctgtcac
7261 ccgtatagtg gactggaatg gcacgcgcat tgcagcgccc acttcaagca ccactacact
7321 cagatctggt ggttttatgg ctatccctat accactgtct tcaaagacca agcaaccagt
7381 gatgtctggg caggataatc caaattatgc tgcttcttct atctctagaa ctgcttcatg
7441 ggtgcaatct caaaattcta tgaggtctgt ttctcctttt cacagtgatg ctttgagaac
7501 cgtttgggtt acaccacccg gttcatcatc aacttcatct gtgcaatcta gtttctatgg
7561 tgtttttaat acagatagat tgcctctgtt cgcaaacaga aggtaataaa attttgtaat
7621 aggatgccag tgggcaccat attcagattt ggttttaatt ggattgtttt aattaaaatt
7681 tggcttaatt ggtgtt
//