Typing tool
|
Complete norovirus genomes
MT344182 | GII.17 | ||
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GII.P17 |
ORF1: 1..5104 ORF2: 5085..6707 ORF3: 6707..7486LOCUS MT344182 7568 bp RNA linear VRL 01-MAY-2020 DEFINITION Norovirus GII isolate 691-1 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MT344182 VERSION MT344182.1 DBLINK BioProject: PRJNA604000 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7568) AUTHORS Yang,Z., Williams-Hill,D., Wolfe,J., Silva,A.J., Hirneisen,K., Ruelle,S., Kulka,M. and Hellberg,R. TITLE Direct Submission JOURNAL Submitted (13-APR-2020) Molecular Virology Team/Devision of Molecular Biology, OARSA/CFSAN/FDA, 8301 Muirkirk Rd., Laurel, MD 20708, USA COMMENT ##Assembly-Data-START## Assembly Method :: CLC GWB v. 11 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7568 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="691-1" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /country="USA" /collection_date="17-Nov-2015" /note="genotype: GII.P17-GII.17" gene <1..5104 /gene="ORF1" CDS <1..5104 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QJA16360.1" /translation="MASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSK QPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQP DAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI SFAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLND SWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIG KLRPLNILNILATCDWTFASIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS TKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE LAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE KAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR ASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKNVKT LDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHL RSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGG CPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS PSLFITSTHVIPKGITDAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG DCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPIL GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD LSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPC TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..994 /gene="ORF1" /product="p48" mat_peptide 995..2092 /gene="ORF1" /product="NTPase" mat_peptide 2093..2629 /gene="ORF1" /product="p22" mat_peptide 2630..3028 /gene="ORF1" /product="VPg" mat_peptide 3029..3571 /gene="ORF1" /product="Pro" mat_peptide 3572..5101 /gene="ORF1" /product="RdRp" gene 5085..6707 /gene="ORF2" CDS 5085..6707 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QJA16361.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTAICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6707..7486 /gene="ORF3" CDS 6707..7486 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QJA16362.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSAPVHMSSPNAPQSKPVKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 gatggcgtct aacgacgctt ccgctgccgt tgctggcaaa aacaacaaca acgacaagga 61 aaaatcttca agtgacagct tgtttgctaa catgtctgtc acttttaaga aagccctcgg 121 ggcgcggtct aaacaaccgc ccccgggaga aacaaaacaa atacaaaaac caccaaggcc 181 accgacaccg gaattggtga agagaatacc tccaccccca cccaatggcg aggatgaacc 241 agggatagtg tacaaggtgg gagagggtgt gtctgggctg cccgacctaa caactgtggt 301 acaacctgac gcacaaaaca cagcttatag tgttccccca cttagccaga gagaagtcgg 361 cgaagctaaa gaaccgctgc ctggctccat tctggaaatg tgggatggtg agatctatca 421 ctatgggctg tatgttgagc gggggcatgt gctcggagta cacaaaccac ctgctgcaat 481 aagctttgcc aaaattgaaa taacaccgct gtctctctac tggagagtgg tctacactcc 541 ccagtatttg atagatccag gaactcttaa gaacttgagc ggagagactt tcccatacac 601 ggcctttgac aacaactgtt atgccttctg ttgttgggtc ctagacctca acgactcctg 661 gcttagcagg agaatgatcc aaagaacaac tggattcttc aaaccttatc aggattggaa 721 cagaaaaccc ttaccaacca tggatgaacc gaaaatcaag aaggccgcga atgctgtcct 781 atgcgctctc tcctcactct tcactagacc cattaaggac atcattggaa agcttagacc 841 actgaacatt cttaatatac tggcaacctg cgattggact tttgcaagca tagtggaatc 901 cttgatcctt cttgctgaac tctttggggt gttctggaca cccccagatg tgtctgcgat 961 gattgctccc ttactcggtg actacgagat gcaaggcccc gaagacctgg ccgtggaact 1021 tgtgcccgtg gtgatgggag gaataggttt ggtgttagga ttcaccaaag aaaagatcgg 1081 caagatgctt tcatcagctg cgaccacact tagggcctgc aaggatctag gatcttatgg 1141 attggagata ctcaaattgg tcatgaagtg gttcttcccc aagaaggagg aggctaacga 1201 actagccatg gtgagggcca ttgaggatgc agtcctggat ttggaggcaa tagaaaacaa 1261 tcacatgacc acccttctca aggataaaga cagcctggcc acatacatga ggactcttga 1321 cttggaagaa gagaaagcaa ggaaactgtc aaccaaatcg gcgtcacctg acatcgtggg 1381 tacaataaac gcattgttgg ctaggatagc agccgccagg tcactggtcc acaaggctaa 1441 ggaggagctc tcaagcagac agaggcctgt tgttgtaatg atatcaggta gaccaggtat 1501 aggaaagacc catctggcca gagagctagc caagaaagtt gcgtcaacac tgtcaggcga 1561 ccaaaggatt ggactggtac ctagaaatgg cgtcgaccat tgggacgcct acaagggaga 1621 aagggtggtc ctgtgggatg attatggtat gagcaaccct atacaggacg cactgaggct 1681 ccaagaattg gctgacacct gtcctctgac cctaaattgt gataggattg aaaacaaagg 1741 aaaagtgttc gacagtgatg ccataattat aacaaccaac cttgcaaacc cagcaccact 1801 agactatgtc aactttgagg cctgctctag acgcatagac ttcttggtgt atgcagacgc 1861 acctgacatt gagaaggcta agcgtgactt ccctggccaa ccagatatgt ggaaagacca 1921 tttcagacca gacttctcac acattaaact tcagctggca ccacagggag gttttgacaa 1981 aaatggcaac accccacatg gcaaaggtgt ggtgaagtcc ctgacgattg gttctctgat 2041 cgccagggcc tccggcttgc tccacgagag aatggatgaa ttcgagctcc aaggctctga 2101 cctgccaacc ttcaattttg accgcaacaa agtcgccgcc ttcagacaat tagcagctga 2161 aaacaaatat ggtcttatgg acacattgag ggtcggcaac caactgaaaa atgttaagac 2221 cctggatgag ctgaagcagg ccataaagaa catcagtatc aagaagtgtc agatagtgta 2281 taatggatgc acctatacca tggaatctga tgggaggggc aaggttgtgg ttgaaaaggt 2341 acaaaacgca acagttcaaa ccaacaatga acttgtaggg gcgctccacc acctgagatc 2401 tgcaaggata agatactatg ttaaatgttt ccaagaagcc atttactctc tactccaaat 2461 tgctggtgca gccttcgtca cctcacgcat cgtgaggcgc atgaacatat caaacctctg 2521 gtcgaagcca cccatcgagg agggtgatga gcctgaagac agaggagggt gccccaagcc 2581 cagggatgaa gatgacctca ctattgactc tagagacatt aaagtggaag ggaagaaggg 2641 caagaacaag tctggccggg gcaagaaaca cacagccttc tcttccaagg gcctcagtga 2701 tgaagagtac gatgagtaca agagaatcag agaggagagg aatggcaaat actcaataga 2761 ggaatacctc caagataggg acagatacta tgaagagctt gccattgcta aggccactga 2821 ggaggacttc tgtgaggagg aggagatcaa aatccgccag agaatcttcc gacccaccag 2881 gaagcagcgg aaagaggaaa gggccacgct tgggcttgtc acaggatcgg aaatcagaaa 2941 gaggaatcca gatgacttta aaccaaaagg aaaattgtgg gctgacgaca acaggagcgt 3001 ggattacaat gagaggatag attttgaggc tcccccgagt gtttggtcta ggatagtcaa 3061 ctttggcaca ggctggggat tctgggtttc tccaagtctt tttataactt caacacacgt 3121 cataccaaaa ggaatcactg atgcctttgg agtgcccata aaccaaatcc aaattcacaa 3181 atctggagaa ttttgccgct tgcggtttcc aaagccaatt agaccagacg tgagtgggat 3241 gatcttggaa gagggcgccc ctgaaggcac tgttgtgtct attcttatca agaggacaac 3301 aggggagctg atgcctcttg cagtcagaat ggggactcat gccacaatga aaatccaagg 3361 tagaacggtg ggtggtcaga tgggtatgct tctcactggc tcaaatgcta aaagcatgga 3421 tctaggcaca acgccaggtg actgcggatg tccatacata tacaaaaggg gcaatgacct 3481 tgtggtcatt ggggtacaca ctgcagcagc tcgtggaggc aacacggtca tatgtgccac 3541 acagggaagt gaaggtgaag ccactcttga aggaggtgac aacaagggta cctattgtgg 3601 agcccccatt ttgggacctg gcaatgcacc aaaattgagc acaaagacaa aattctggag 3661 atcctctaac gcaccgcttc ccccaggtac ttatgaacca gcataccttg gtgggagaga 3721 cccgcgcgtg aagggaggcc catctctgca acaagttatg agagaccaac ttaaaccttt 3781 tacagagccc agagggaagc caccaaaccc aaatgtctta gagtcagcaa agaagactat 3841 catcaatgtt ctggaacaaa ccattgaccc ccctcaaaag tggtcatatg cccaagcttg 3901 tgcatccctc gacaagacaa cctccagtgg atacccgcac cacgtccgga agaatgacta 3961 ttggagtggt gaatccttta caggaaaact tgcggatcag gcttcaaaag caaatctcat 4021 gtatgaggaa ggcaagcaca tgcaaccagt ttacaccgca gcactcaaag acgagctcgt 4081 gaaaactgac aaaatttatg gcaaaatcaa gaaaagactc ctgtggggtt ctgacctctc 4141 cacaatgatt cgatgcgcca gagcatttgg tggtctcatg gatgaattca aagcaaattg 4201 tattacgctc cctatcagag ttggtatgaa tatgaatgaa gatggtccca taatatttga 4261 gaaacactcc aggtacaggt accactatga tgctgattac tcccgctggg actccacaca 4321 acagcgggca gtgctggaag cggcacttga aatcatggtg agattttctg ctgagccaca 4381 gctggcacaa atagtggcag aggacctgct gtcaccaagt gtggttgatg tgggcgattt 4441 caaaatcgct atcaatgaag gcctaccatc tggcgtgcct tgcacctcac aatggaattc 4501 tattgcccac tggttactta ccttgtgtgc cctttctgaa gtgacaggat taggtcctga 4561 catcatacaa gctaactcca tgtactcttt ctatggtgat gatgagattg tgagcacaga 4621 cataaaattg gacccagaga aattgaccgc aaagctcaaa gaatatggcc ttaaacccac 4681 tcggcccgac aaaactgagg ggccgttggt gattagtgag gacctgaatg ggttgacttt 4741 cctccgccga acagtcaccc gtgatccagc aggttggttt ggaaagttgg accaaaactc 4801 catcctcagg cagttgtact ggacaagagg acccaaccat gaagacccca gtgagaccat 4861 gataccacac gcacaaagac ctgtgcagct catggcacta ctaggagaat cctccctaca 4921 tggaccctca ttttacagca aggttagcaa attagtcata tctgaactta aagagggagg 4981 aatggatttt tatgtgccca gacaagagtc aatgttcaga tggatgaggt tctcagatct 5041 aagcacatgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccgc tccatctaat gatggtgctg ctggtctcgt accagagggc aacaacgaga 5161 cccttcccct agaaccagtt gcgggcgcag ctatagccgc acccgtcact ggccaaaata 5221 atataattga cccctggatt agaacaaatt ttgtgcaagc accaaatgga gagttcacag 5281 tgtcacccag aaactctcct ggagaaattt tattaaattt agagttgggc cctgatttga 5341 acccttattt ggctcatttg tcaaggatgt acaacgggta tgctggtgga gtggaagttc 5401 aggttctcct ggcagggaac gcgttcactg ccggaaagat cctcttcgcc gccgtcccgc 5461 caaatttccc agtggaattc ttaagcccag cccagatcac aatgctccca catttaatag 5521 tagatgttag gactcttgaa ccaattatga tcccactccc tgatgttagg aatacattct 5581 tccattatag taaccagcct aacagccgca tgagattagt ggctatgctc tataccccac 5641 tcagatctaa tggctcaggt gatgatgtct ttactgtctc ttgtagggtt ttgactaggc 5701 ctactcctga ttttgagttc acttatttag tgccaccttc tgttgaatcc aaaactaagc 5761 ctttttcctt acctatttta accctttctg agctcacaaa ttcgaggttt ccagtcccca 5821 tcgattcgct tttcaccgcc cagaataatg tgttgcaggt gcagtgtcaa aatggcaggt 5881 gtacacttga tggtgagtta caaggcacaa cccagttgct cccaactgcc atctgtgcat 5941 tcagaggacg ggtgacagca caaattaacc aacgtgacag gtggcacatg caactgcaaa 6001 acctcaatgg tacaacatat gacccaactg atgatgtgcc agccccgctg ggtacacctg 6061 acttcaaggg cgtcgtgttt gggatggtaa gccaaagaaa tgtgggtaat gatgcgcctg 6121 gctcaaccag agcccaacag gcgtgggttt caacctatag cccccaattt gtccccaaat 6181 taggttctgt caatcttaga attagtgata atgatgattt ccaattccag ccgacaaaat 6241 tcacaccagt gggcgtcaat gatgacgatg atggccaccc gttcagacaa tgggaactac 6301 caaactattc aggggagctt accttgaata tgaatcttgc ccccccagtt gctccaaatt 6361 ttcctggtga acaattgtta ttcttcagat ctttcgtgcc atgctcagga ggttacaacc 6421 aaggtattat agattgtctt attccccaag aatggatcca acacttctat caggaatcag 6481 caccctccca gtcagacgtg gccctaatca ggtatgtcaa ccccgatacg ggacgtacac 6541 tgtttgaagc aaaattgcac agatctggtt acattactgt ggctcactct ggagactatc 6601 ctcttgttgt tccggctaat ggacacttta gatttgattc ttgggtaaat cagttttact 6661 cactcgcccc aatgggaact gggaatgggc gaaggagggc tcagtaatgg ctggggcttt 6721 cattgcagga ttggcaggcg acatgctcac gtcatctgtg ggctcccttg tgaacgcagg 6781 ggcaaacgcc atcaaccaaa agatagactt tgaaaacaac aaacaactcc agtctgcttc 6841 ctttcagcat gataaagaga tgctccaagc gcaggtgagg gcaaccaagc agctgcaatc 6901 tgaaatgata gccctaaagc agggggtttt ggccgcaggc ggcttttccc ccactgatgc 6961 agcaagggga tccattggtg cacccatgac aaaggtgctt gactggtctg gcactcgata 7021 ctgggcgccc aattccacaa agacaactgg ctattcggga caattcacct ctgcacctgt 7081 gcatatgtct agcccaaatg ctccacaatc aaaacctgta aagcctaggt ctctagctcc 7141 ttcctcttct tctagcagtg tctatagtat gtatactcaa tctacacatt taacatctgg 7201 ctcttctagt aatgcttctt ctgcctccac aaaattgaca aatttaagct ctggctcctc 7261 tcaaaacaga acagcagagt gggtaaatca acagagaagt cttagccctt tcatgagtgg 7321 cgcacttaac atctcacatg tcacgccacc ctcaagtagg gcttccagtt ctgggacggt 7381 ctcgaccgtg cccaaggaag ttttggactc ctggacgtct gcgtttaata cacacagaca 7441 gccgctcttc gcacacctca gagtgagggg ggagtcacgt gtttagtgaa aagaaataat 7501 tggctataat gtgatttctt tctaaatttg gctaatttgt atcttttaga ggacgggtga 7561 cagcacaa //