Typing tool
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Typing tool
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Complete norovirus genomes
| MT316113 | GII.3 | |
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| GII.P16 |
ORF1: 1..5091
ORF2: 5072..6718
ORF3: 6718..7168
LOCUS MT316113 7168 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 017_GII.P16_GII.3_Nova_Olinda nonstructural
polyprotein (ORF1) gene, partial cds; VP1 (ORF2) gene, complete
cds; and VP2 (ORF3) gene, partial cds.
ACCESSION MT316113
VERSION MT316113.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7168)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7168)
AUTHORS Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr
Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao
Paulo 01246902, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7168
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="017_GII.P16_GII.3_Nova_Olinda"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="16-Jan-2015"
/note="genotype: GII.P16_GII.3"
gene <1..5091
/gene="ORF1"
CDS <1..5091
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QIW94444.1"
/translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
PAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
AKVELAPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKTME
ELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEAPK
SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRRRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..987
/gene="ORF1"
/product="p48"
mat_peptide 988..2085
/gene="ORF1"
/product="NTPase"
mat_peptide 2086..2616
/gene="ORF1"
/product="p22"
mat_peptide 2617..3015
/gene="ORF1"
/product="VPg"
mat_peptide 3016..3558
/gene="ORF1"
/product="Pro"
mat_peptide 3559..5088
/gene="ORF1"
/product="RdRp"
gene 5072..6718
/gene="ORF2"
CDS 5072..6718
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QIW94445.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKVIFAAIPPNFPTDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKLFTLPILTISEMSNSRFPVPIDSLHTSPTDNIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDNEADFQQWTLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGYMTIA
KSGDSPITVPPNGYFRFESWVNPFYTFAPMGTGNGRRRIQ"
gene 6718..>7168
/gene="ORF3"
CDS 6718..>7168
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QIW94446.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGAGAINQKVDFENNKYLQNA
SFNHDKEMLNAQVEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPITKVLDWSG
TRYWAPNATSTTSMSGGFTGQAVHRATPNFKTNQAPKSTPSSGSSVRS"
ORIGIN
1 atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga caaggaaaaa
61 tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc cctcggggcc
121 cggcccaaac agcctgcccc gagggacaac tcacaaaagc ccccaagacc accaactccc
181 gagttggtta agaggatacc ccctccccca cctaatggtg aagaagaaga accagtcatt
241 aggtatgagg ttaagagtgg gatctctggc ctgcccgagc tcacaacagt cccccaaccg
301 gatgtggcca acacggcatt cagtgtccca ccgctgagct tgagagaaaa cagggaggcc
361 aaggaaccgc tgacaggggc aatattagag atgtgggatg gagagatata ccactatggc
421 ctgtacgtgg agaaaggctt agtgttgggt gtgcacaaac cacctgcagc tataagcatg
481 gcaaaagtgg agctggcgcc gttgtcattg tactggcgtg tggtctacac cccccaatac
541 ctcatctccc ctgaaactct caggaggctc aacggagagg cattccctta caccgccttt
601 gacaacaatt gctatgcctt ttgctgctgg gtgttagacc tcaatgactc atggcttaac
661 aggaggatgg tgcaaagaac aacaggcttc ttcagacctt accaagagtg gaatagaaaa
721 cccctgccca ctatggatga ctccaaaatc aagaaggtgg caaacatatt cctgtgttca
781 ttgtccacgt tgttcaccag acctataaaa gacctcatag gaaaaattaa accattaaac
841 atcttgaaca tcctggcaac gtgtgactgg acatttgccg gaatagtgga gtctctgata
901 ctacttgctg aactctttgg agttttctgg acacccccag atgtgtctgc tatgatcgct
961 cccttactcg gagactacga gttgcaaggg ccagaagacc tcgccgttga gctcgtacct
1021 gtggtaatgg gagggattgg tctggtgctg ggattcacca aagagaaaat tggcaaaatg
1081 ttgtcctcag cagcatcaac gctcagggct tgtaaagatc ttggtgccta tggcttagag
1141 atactcaaat tggtcatgaa gtggttcttc ccaaagaaag aagaggccaa tgagctagcc
1201 atggtgagag ctatagagga tgctgtactg gatcttgagg caatagaaaa taatcacatg
1261 acaactctgc tgaaagacaa agacagccta gcaacctaca tgaaaacact ggacatggag
1321 gaggagaaag ccagaagatt gtccacaaaa tctgcatccc ccgacatagt tgggacgatc
1381 aacgccctgc tggctcgaat agcagcggct aggtcattag tccacagggc caaggaggag
1441 ttatctagca ggatgagacc agtagttgtt atgatatctg gcaaaccagg gataggaaaa
1501 actcatttgg ccagggaggt ggcaagaaag gtggcatcca ctctcacagg ggatcaaaga
1561 gtcgggctca taccgagaaa cggtgtggac cattgggatg catataaagg tgagagagtc
1621 gtgctgtggg acgactatgg catgagcaac cccattcatg atgctctgcg catacaagaa
1681 ttggctgata cgtgtcccct taccttaaat tgtgacagaa ttgaaaataa gggaaaagtt
1741 tttgacagtg aagtcataat aattacaaca aaccttgcca atccagctcc acttgattat
1801 gtcaactttg aggcctgttc caggagaatt gacttcctgg tgtacgccga ggcaccagaa
1861 gtagaaaagg caaaacgaga ctttcctggt caaccagata tgtggaagga cgccttcaag
1921 tcggactttt cacatatcaa gttgcaactt gcacctcagg gcggctttga caagaatggc
1981 aacaccccac atgggaaagg agtgatgaag accctcacca ccggttccct gattgcccgt
2041 gcatcaggct tactgcatga gaggatggat gaatttgaac tccaaggccc cacagtcacc
2101 accttcaatt tcgaccggaa cagaatcacc gcattcagac aattggctgc agaaaacaag
2161 tatgggttgg tggacaccat gagagttggc aatcaattaa aaggagtgaa aaccatggaa
2221 gaactcaaac aagcaatcaa gaatgtgatc atcaagaggt gccggatcat ctacggtggc
2281 tccacgtatg accttgaatc tgatggcaag ggcaaagttt tggtggaaaa ggtcaagaac
2341 acctctgtac agaccaacaa cgagttggcc ggagccctgc atcacctcaa acatgcccga
2401 atcaggtact atgtcaaatg tgtgcaagaa gcagtctact ccatcataca aattgccggc
2461 gctgcgtttg tcaccacacg cattgcacgc cgcatgaaca tacaagagct ttggtcgaag
2521 ccaccattag accaaaatga atcagaggct aaggaagagg cccccaagtc agaagatgac
2581 gagttcatca tatcttctaa ggacatcaag gaggaaggaa agaagggcaa aaacaaaact
2641 ggccgtggca agaaacacac tgcattctct agcaagggct tgagcgatga ggagtatgac
2701 gagtacaaga ggataagaga agagagaaat gggaagtact ccatagagga gtatcttcaa
2761 gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggaaga agacttctgt
2821 gaggaggagg agatcaaaat ccgtcagagg attttccgtc ccaccaggaa acaaaggaag
2881 gaagagaggg ccacactagg gctagtaact ggttcagaaa tcagaagaag aaaccctgat
2941 gacttcaaac ctaaagggaa actgtgggcc gatgacaaca gaagtgttga ctacaatgag
3001 aaactggact ttgaggcccc cccaagcata tggtctagga ttgtgagctt tggttctggt
3061 tggggcttct gggtatcacc aagcctgttc ataacatcaa ctcatgtaat ccctgcaggc
3121 ataacagagg catttggagt ccccatcaaa caaatccagg tccacaaatc aggtgaattt
3181 tgccggttca gattcccaaa accaattaga ccagatgtga caggaatgat cttggaagaa
3241 ggtgcgcctg agggcaccgt ggcaaccgtg ctcatcaaac gccctaccgg agagctcatg
3301 ccccttgcag ccagaatggg gacacacgca accatgaaaa ttcaaggccg catggttggc
3361 ggacagatgg gtatgttgct cactggttca aatgctaaag gaatggattt gggaacaact
3421 cctggtgatt gtggctgtcc ctacatctac aaaaggggca atgactatat agtcattggg
3481 gtgcacacag cagcagcccg tggtggaaac accgtcatct gtgccacaca gggaagtgag
3541 ggtgaggcaa ctcttgaggg tggagatgac aaaggaacat actgtggggc acccattcta
3601 ggccctgggg gggcaccaaa attgagcacc aaaaccaaat tttggaggtc atcgaacacg
3661 cctcttccac cagggacata tgagcctgcc tacctcggtg gccgtgaccc gcgtgttaag
3721 ggtgggccct ccttgcagca ggtaatgaga gaccagttga agccattcac tgagcccagg
3781 ggtaaacctc caagaccaag tgtgttggaa gcagccaaac aaaccatcat taatgtcctc
3841 gaacaaaccc tggaccctcc acaaaaatgg acatacgcac aggcgtgtgc ttcacttgac
3901 aaaaccacct ccagcgggca tccccaccac gtccgaaaga atgaattctg gaatggtgag
3961 accttcactg gtaaattggc agaccaagca tcaaaagcaa atctaatgtt tgaggaaggg
4021 aaacacatga caccagtgta tacagcagcc ctcaaggacg agctggtcaa gactgacaaa
4081 atctatggaa agatcaagaa gagactgctc tggggctctg acttgtccac catgatccgg
4141 tgcgccaggt cctttggtgg gctcatggat gagatgaagg cacactgcat atcactccca
4201 gtccgagttg gcatgaacat gaatgaagat ggtccaataa tatttgagaa gcactccaga
4261 tacaagtacc actatgatgc agactactcc cgctgggatt caacacaaca gagggcggta
4321 ctagcagcag ccttggaaat catggtcagg ttctctgcag agccacaatt ggcacagata
4381 gtcgctgagg atctgctggc ccccagtgtg gtagatgtag gagactttaa aatttcaata
4441 aatgaagggc tcccctctgg tgtaccatgc acttctcaat ggaattccat cgcacactgg
4501 ctgctaaccc tctgtgcctt gtctgaagtc accaaactgt cccctgacat tgtacaggca
4561 aattccatgt tctcatttta cggtgatgac gagattgtca gcaccgatat aaaattggac
4621 cctgaaaagt taaccaccaa attgaaggag tacggcctga aaccaactcg cccagacaaa
4681 accgagggac ccctgatcat cagtgaggat ttgaacggac tcactttcct ccggaggacg
4741 gtgactcgtg acccagctgg ctggtttgga aaactggacc aaagctcaat actgaggcag
4801 atgtactgga ctagaggacc aaatcatgaa gatcccaatg agacaatgat accccactct
4861 caaagaccca tacagctcat ggcactgctt ggtgaggcct cccttcacgg accctctttc
4921 tatagcaaaa ttagtaaatt ggtcataact gaactcaaag aaggtgggat ggacttttac
4981 gtgccaaggc aggaacccat gttcaggtgg atgaggtttt ctgacttgag cacgtgggag
5041 ggcgatcgca atctggctcc caattttgtg aatgaagatg gcgtcgaatg acgctgctcc
5101 atctaatgat ggtgccgccg gcctcgtacc agagatcaat aatgaggcaa tggcgctaga
5161 tccagtggcg ggtgcagcga tagcagcacc ccttactggc cagcaaaata taatagatcc
5221 ctggattatg aataattttg tgcaagcacc tggtggtgag tttacagtgt cacctaggaa
5281 ctcccctggt gaagtacttc taaatttaga attaggccca gaaataaatc cctatctggc
5341 gcatcttgct aggatgtaca atggttatgc aggtgggttt gaggtgcagg tggtcctggc
5401 tggaaatgcg tttacagcag gaaaagtgat ctttgcagct atacccccca atttcccaac
5461 tgacaatttg agtgcagcgc agatcacaat gtgtcctcat gtgattgtgg atgtcaggca
5521 gttggaacca atcaacctcc cgatgcctga tgtccgcaac aatttctttc attacaatca
5581 aggttctgat tcgaggttac gcttaattgc aatgttgtat acacccctta gggcaaataa
5641 ttctggagat gatgttttta ctgtgtcatg tagggtgttg actaggccca gtcctgattt
5701 ctcattcaat ttcctcgtcc cacccactgt ggaatcaaag acaaaacttt ttaccctccc
5761 tatcttgact atctctgaga tgtctaattc tagatttcca gtgccaattg actctctgca
5821 caccagtcca actgacaaca ttgttgtcca gtgccaaaat gggcgcgtca cccttgatgg
5881 tgagctaatg ggcaccaccc aactcttgcc gagtcagata tgtgctttta ggggtgtgct
5941 caccagatca acaagcagag ccagtgacca agctgacaca gcaaccccca gactcttcaa
6001 ctactattgg cacatacaac tggacaacct aaatgggacc ccgtatgatc ctgcagagga
6061 cataccagct cctctgggga caccagattt tcggggcaaa gtctttggcg tagccagcca
6121 gagaaaccct gacagcacaa caagggcaca tgaggcaaaa gtggacacaa catctggccg
6181 cttcacccca aaattgggct ccctagaaat atccactgaa tctggtgact ttgaccagaa
6241 tcaaccaaca agattcaccc cagttggcat tggagttgac aatgaggcag actttcaaca
6301 atggacctta cctgattatt ccggtcagtt cacccacaac atgaatctag ccccagctgt
6361 cgctcccaat tttcccggtg aacagcttct tttcttccgc tcacatttgc catcctctgg
6421 cgggcggtcc aatggcattc tagactgcct ggtcccccag gaatgggtcc aacacttcta
6481 ccaagaatcc gcccctgccc aaacgcaggt ggctctggtc aggtatgtta accctgacac
6541 tggtagggtg ttatttgagg ctaagctgca caagctaggc tacatgacta tagctaagag
6601 tggtgattct ccaataactg tgcccccaaa tggatacttt aggtttgaat cttgggtgaa
6661 ccccttttac acatttgccc ccatgggaac tgggaatggg cgtagaagga ttcaataatg
6721 gctggagcct ttatagcagg attggctggt gacatgctca caaacactgt aggatcttta
6781 gttaatgcag gagctggtgc tattaatcaa aaagttgatt ttgaaaataa taaatatcta
6841 caaaatgcat cttttaatca tgataaggag atgttaaatg cacaagttga ggcaacaaag
6901 aggctacagg ctgacatgat tgctatcaaa caaggggttt tgaccgctgg cggtttctcc
6961 cccactgatg cagcccgtgg ggctattaac gcccccataa caaaagttct agattggagt
7021 ggaaccaggt actgggcacc aaatgccacc tccacaacct caatgtcagg tggcttcaca
7081 ggtcaagctg tgcacagagc tacaccaaat tttaaaacca atcaagcccc aaaatccaca
7141 cccagcagtg ggtcttcagt gaggtcaa
//