Typing tool
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Typing tool
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Complete norovirus genomes
| MT242487 | GII.1 | |
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| GII.P33 |
ORF1: 1..5106
ORF2: 5087..6694
ORF3: 6694..7372
LOCUS MT242487 7372 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 190_GII.Pg_GII.1_Araguaina nonstructural
polyprotein (ORF1) and VP1 (ORF2) genes, complete cds; and VP2
(ORF3) gene, partial cds.
ACCESSION MT242487
VERSION MT242487.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7372)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7372)
AUTHORS Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (25-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr
Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao
Paulo 01246902, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7372
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="190_GII.Pg_GII.1_Araguaina"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="11-Sep-2015"
/note="genotype: GII.Pg_GII.1"
gene 1..5106
/gene="ORF1"
CDS 1..5106
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QIQ42241.1"
/translation="MKMASNDASAAAAATSNNDIAKSSSDGVLSSMAVTFKRALGARP
KQPPPRETEQKQKPPRPPTPELIKKIPPPPPNGEDDIVVSYSAKDGVSGLPELSTVRQ
PDGTNTAFSVPPLNQRENKDAKEPLPGTILEMWDGEIYHYGLYVERGLVLGVHKPPAA
ISLAKVELTPLSLYWRPVYTPQYLISPETLKKLHGETFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDII
GKLRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKDEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKL
STKSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAR
DLAKKVAATLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELAD
TCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDV
EKAKRDFPGQPDMWKDAFRPDFSHIKLMLAPQGGFDKNGNTPHGRGVMKTLTSGSLIA
RASGLLHERLDEYELQGPTPTTFNFDQNKVFAFRQLAAENKYGLVDTMRVGSQLKNVK
TVSELKQALKNISIRRCQIVYGGLTYSLESDGKGNVRVEKVQSPAVQTNNELTGALHH
LRCARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQVDDEEETTSKD
GCPKPKDEEEFVISSEDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREER
NGKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERVSLG
LVTGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWV
SPSLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAP
EGTVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTP
GDCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAPI
LGPGNAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFT
EPRGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTFAQACASLDKTTSSGYPHHVRKNE
HWNGESFTGKLADQASKANLMFEEGKHMTPVYTGALKDELVKTDKIYGKIKKRLLWGS
DLATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFGKHSRYTYHYDADYSR
WDSTQQRAVLASALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVP
CTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAK
LKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTR
GPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPR
QEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 1..996
/gene="ORF1"
/product="p48"
mat_peptide 997..2094
/gene="ORF1"
/product="NTPase"
mat_peptide 2095..2631
/gene="ORF1"
/product="p22"
mat_peptide 2632..3030
/gene="ORF1"
/product="VPg"
mat_peptide 3031..3573
/gene="ORF1"
/product="Pro"
mat_peptide 3574..5103
/gene="ORF1"
/product="RdRp"
gene 5087..6694
/gene="ORF2"
CDS 5087..6694
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QIQ42242.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPFLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPLENLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPVPIDELYTSPNEGVVVQPQNGRSTLDGELLGTT
QLVPSNICALRGRINAQVPDDHHQWNLQVTNANGTPFDPTEDVPAPLGMPDFLANIYG
VTSQRNPDNTCRAHDGVLATWSPKFTPKLGSVVLGTWEEQDLDLNQPTRFTPVGLYDT
NHFDQWILPNYSGRLTLNMNLAPSVAPLFPGEQILFFRSHIPLKGGTSNGAIDCLLPQ
EWIQHFYQESAPSPTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6694..>7372
/gene="ORF3"
CDS 6694..>7372
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QIQ42243.1"
/translation="MAGAFVAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIALRQGVLTAGGFSPTDAARGAVNVPMTQVLDWNG
TRYWAPGATKTTAFSGGFTSSPNTRTVDLPRKTSTTPAPTPISRPSSSASTVSTRSTI
ISGTSGLSSLTRSSFNSQPTSSSSRTSEWVRGQNRALEPYMRGALQTAYVTPPSSRAS
SNGTVSTV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgctg ctaccagcaa caacgacatc
61 gcaaaatctt caagtgacgg agtactaagt agtatggctg tcacttttaa acgagccctc
121 ggggcccggc ctaaacagcc gcccccgagg gaaacagaac aaaaacaaaa acctccacga
181 ccgcccaccc cggaattaat caaaaagatt ccacctcccc cgcccaacgg ggaggacgat
241 atagtggtat cctatagtgc caaagatggt gtctccggcc tgcctgagct atccaccgtc
301 aggcagccag atgggacaaa cacagcattt agtgtccccc cactcaacca gagggaaaac
361 aaagatgcta aagaaccgct gcctggcacc atcttggaaa tgtgggacgg agagatttac
421 cactacggct tgtacgtgga gcggggcttg gtgcttgggg tgcacaaacc accagcggct
481 attagccttg caaaggttga actaacacca ctgtctctgt actggaggcc agtgtacacc
541 cctcagtacc tcatatcccc agaaactctc aaaaagttac atggagagac attcccttac
601 acggcctttg acaacaactg ttacgccttt tgttgttggg tcttggatct aaatgactct
661 tggctcagca ggaggatgat acagagaaca actggcttct tcagacccta ccaggactgg
721 aacaggaaac ctctccccac catggatgat tccaaattga aaaaggtggc taatatagtc
781 ctgtgtgcat tgtcatcatt attcaccagg cccattaagg acataatagg aaaactaagg
841 cccctaaaca tactcaatat actagcttcc tgcgactgga ctttcgcggg aatagtagaa
901 tccctaattc tccttgcaga actcttcgga gttttctgga cacccccaga tgtgtctgcg
961 atgatcgccc ccttactagg cgactacgaa ctacagggac ctgaagatct cgctgtggaa
1021 ctcgtgccag tagtgatggg ggggataggt ttggttctag gtttcaccaa ggagaagatt
1081 ggcaagatgc tatcatctgc cgcgtccacc ctcagagctt gtaaagatct cggagcatat
1141 ggattggaaa ttctaaagtt ggtcatgaag tggttcttcc cgaagaagga tgaggcgaat
1201 gaacttgcaa tggtgagatc cattgaggat gcagtgctag accttgaagc aattgagaac
1261 aatcacatga caaccctact caaagacaaa gacagcttag caacctacat gaagactctg
1321 gaccttgagg aggagaaagc caggaaactc tccaccaaat ctgcttctcc tgatattgtg
1381 ggcactatca attcacttct ggcacggatt gcagctgccc gttccctggt acatcgggca
1441 aaagaagagc tttccagtag gccaagaccc gttgttgtca tgatatcagg aaagccaggg
1501 atagggaaaa cccaccttgc cagagatttg gcaaagaaag ttgcagccac cctcacaggg
1561 gaccagaggg taggcctcat cccacggaat ggtgtcgatc actgggacgc gtacaaaggt
1621 gagagagtcg tcctttggga tgactatgga atgagtaacc ccatccacga cgcccttagg
1681 ctacaagaac ttgctgacac ttgcccccta acattaaatt gtgatagaat tgagaacaaa
1741 ggaaaggtct ttgacagtga tgccataatt atcacaacta atctggctaa cccggcacca
1801 ctggactatg ttaattttga agcatgttcg aggcgcatcg acttcctagt gtatgctgat
1861 gcccccgatg ttgaaaaagc aaaacgcgac ttcccagggc agcctgacat gtggaaggat
1921 gcttttagac ctgacttctc acacataaaa ttgatgttgg ctcctcaggg tggttttgat
1981 aagaatggta acaccccaca tggaagaggt gtcatgaaaa ccctcacatc tggctccctc
2041 attgcccgtg cttcaggact cctccacgaa agactggatg agtacgagtt acaagggcca
2101 acacccacaa ccttcaattt cgaccaaaac aaggtgttcg cctttagaca gcttgccgct
2161 gaaaacaagt acgggctggt ggacaccatg agagtaggaa gccagctcaa gaatgtcaag
2221 accgtgtcag agcttaaaca ggcacttaag aacatttcaa ttagaaggtg ccagatagtc
2281 tatggtggtc tcacctattc acttgaatct gatggcaaag gtaatgtgag ggttgagaag
2341 gtgcaaagtc cagctgtgca gaccaacaat gagctaactg gcgcactaca ccacttgagg
2401 tgcgctagga ttagatatta tgttaagtgt gtccaggaag ctttgtattc catcatccaa
2461 attgctggag ccgcgtttgt caccacgcgc attgcaaagc gcatgaacat acaaaacctc
2521 tggtccagac cacaggtaga tgatgaggaa gagaccacca gcaaagacgg gtgcccaaaa
2581 ccaaaggatg aggaggagtt tgtcatctcg tctgaagaca tcaaagctga aggtaagaag
2641 ggaaagaaca agtctggccg cggcaagaaa cacacagcct tctcgagtaa gggtcttagt
2701 gatgaggagt acgatgagta caagagaatc agagaagaaa gaaatggcaa gtactccata
2761 gaggaatacc tccaagatag agacaagtac tatgaggagg ttgccatagc cagggccact
2821 gaagaggact tttgtgagga agaagaggcc aagatccggc agaggatttt cagaccaaca
2881 aggaaacaac gcaaggagga gagggtttca ctcggactgg tcacaggctc ggaaatcagg
2941 aaaaggaacc cggatgactt caaacctaaa ggaaagttgt gggctgatga cgacaggagt
3001 gtcgattaca atgaaaaact cagttttgaa gctcccccaa gcatctggtc gagaatagtc
3061 aactttggat caggttgggg cttctgggtc tcaccaagcc tttttataac atccactcat
3121 gtcatacctc aaggggcaca agagttcttc ggtgtatcca tcaaacagat ccaaattcac
3181 aagtcaggtg agttctgccg actaagattc ccaaagccaa tcagaactga tgtgacaggc
3241 atgatcctag aggaaggggc ccctgaaggc accgtggcca cactgctcat aaagaggcca
3301 actggagagc tgatgccact agcggctaga atgggcaccc atgcaactat gaagatccaa
3361 ggccgaactg tcgggggaca gatggggatg ctcctgacag gatccaacgc caagagcatg
3421 gatttgggta ctacaccagg tgattgtgga tgcccatata tctacaaaag aggaaatgac
3481 tacgtagtca tcggggtcca cacagctgcc gcccgcggag ggaacactgt tatctgtgca
3541 acccaaggaa gtgagggcga ggccgttctt gaaggtggtg acaacaaagg cacctattgt
3601 ggcgccccaa tcctaggtcc aggaaatgcc cccaaactca gtactaaaac taaattctgg
3661 aggtcctcaa cagcaccact cccgcctggc acatatgaac cagcttacct cggaggtaaa
3721 gaccccaggg tgaagggtgg tccctcatta caacaagtta tgagagacca attgaaaccg
3781 ttcacagaac ccagaggtaa gccaccaaag cctagtgtat tggaagcagc caaaaagaca
3841 attattaacg tccttgagca aactatagat ccaccccaga aatggacgtt cgcacaggcg
3901 tgcgcctccc ttgataaaac aacctctagt ggctatccgc accacgtgcg gaagaatgaa
3961 cattggaatg gggaatcttt cacagggaag ttggctgatc aggcttcaaa ggctaatttg
4021 atgtttgagg aaggaaaaca catgacacca gtctatacag gagctctcaa ggatgagtta
4081 gtcaaaactg acaaaatata tggtaagatc aagaaaaggt tattatgggg ctcagatctg
4141 gcaaccatga ttcgttgtgc tcgagcgttc ggagggttga tggatgagct caaggcccat
4201 tgtgtcacac tccccatcag ggtggggatg aacatgaatg aagatggtcc catcattttt
4261 gggaaacact ctaggtacac ctaccattat gatgcagact actctcgatg ggactcaaca
4321 cagcagagag ctgttttagc ttcagcccta gagatcatgg taaagttttc cccagaacca
4381 cacctggctc aaattgtcgc agaagatctc ctatctccca gcgtgatgga cgtgggcgat
4441 tttaaaatat caatcactga aggactcccc tctggggtgc cttgcacctc acaatggaac
4501 tccattgctc attggcttct cacgctctgt gcgctctctg aggtgacaga tctatctcct
4561 gacatcatcc aagcaaactc acttttctct ttctatggtg atgatgaaat tgtgagcact
4621 gatattaaat tagatccaga aaggctaaca gccaaactaa aagagtatgg cctcaagcca
4681 acccgcccgg acaagactga agggcctttg gtcatttctg aggacttaga tggtctgacc
4741 tttttgcgga gaactgtgac ccgtgatcca gcaggttggt ttggaaaatt ggaacaaagc
4801 tcaatactaa gacagatgta ttggaccagg ggccccaacc atgaagaccc ctctgagaca
4861 atgataccac attctcaacg acccatacag ttgatgtccc tattgggtga agctgcattg
4921 catggcccat cgttctacag caaaatcagc aaattggtca tctcagagtt gaaagaaggt
4981 ggcatggact tttacgtgcc aagacaagag ccaatgttcc ggtggatgag gttctcagac
5041 ttgagcacgt gggagggcga tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc
5101 gaatgacgcc gctccatcta atgatggtgc agccggtctc gtaccagagg tcaacaacga
5161 gacgatggca cttgagccgg tggctggggc ctctatagct gcccctttga ccggccaaaa
5221 taatgtgata gacccctgga ttagaatgaa ttttgtccaa gctccaaatg gtgaatttac
5281 agtgtccccc cgtaattccc caggtgaagt tttgttgaat ttggaattag gccctgaact
5341 aaatccattc ttggcacatc tttcaagaat gtataatggt tatgctggtg gggttgaagt
5401 gcaggtgcta cttgctggga atgcgttcac agcaggaaaa ctagtgttcg cggcaatccc
5461 cccgcacttc cctcttgaga atctaagtcc tggtcaaatt acaatgttcc ctcacgtgat
5521 tattgatgtt agaactttag aacctgttct tttgccttta ccagatgtta ggaataattt
5581 ctttcattac aatcagcagc ctgagccccg tatgagactt gtggctatgt tgtatactcc
5641 tcttagatct aatggctctg gtgatgatgt gttcacagtc tcttgtaggg tcctcacccg
5701 cccctctcca gattttgatt ttaattattt ggttccccca actgtggaat ctaaaactaa
5761 accattcacc ctgccaatat tgaccattgg agaattgtca aattctaggt tcccagtgcc
5821 aatagatgaa ttgtacacca gccccaatga aggagtggtt gtgcaacctc aaaatggcag
5881 atcaacactt gatggtgaac tgcttggcac aacacaactt gtaccatcaa acatctgtgc
5941 cttgcgaggg cgcatcaacg cccaagtgcc agacgaccac catcaatgga acttgcaggt
6001 tacaaacgca aatgggactc ccttcgaccc cactgaagat gtccctgcac cattgggcat
6061 gccagacttc ctggcaaaca tctacggagt tactagccag aggaaccctg acaacacttg
6121 ccgtgcccat gatggggtct tggcaacctg gagccctaaa tttacaccta agttaggatc
6181 tgtggttttg ggcacttggg aagaacaaga tcttgatctc aaccaaccta ccagattcac
6241 acctgtcggt ttgtatgata caaaccactt tgatcagtgg attctaccca actattctgg
6301 aagattaacc ttaaacatga atttggcgcc ctccgttgct ccccttttcc caggtgaaca
6361 aatactcttc tttaggtccc acataccact taaaggaggc acttccaatg gtgccattga
6421 ctgtctactc cctcaggagt ggatccagca tttctatcag gaatcagccc cgtcacccac
6481 agatgttgct ctgattaggt acaccaaccc tgacacgggc cgtgtccttt ttgaggccaa
6541 actacatagg caggggttca ttacagtagc aaattctggt tctagaccta ttgttgtccc
6601 ccctaatggt tattttaggt ttgattcttg ggttaatcag ttttattctc tcgcccccat
6661 gggaactggg aatgggcgca gaagggtgca gtaatggctg gagcttttgt agcaggtctt
6721 gccggtgaca tagtcaccaa tagcattggt tcacttgtga acgctggagc caatgcaata
6781 aaccaaaaag tagactttga aaacaacaaa caactacagc aggcctcttt caaccatgat
6841 aaggaaatgt tgcaagctca aattcaggcc acaaaacaat tacaggctga catgattgcg
6901 ctcagacaag gggtgttgac cgcaggcggc ttctccccta ctgatgcagc aagaggggcg
6961 gttaatgtgc ccatgacgca agtcttggac tggaatggga ctaggtactg ggcccccgga
7021 gccaccaaaa caactgcttt ctccggtggg ttcacaagct ctcccaatac caggactgtt
7081 gatttgccta ggaaaacatc aaccacacca gcccccacac ctatatccag acctagttct
7141 tctgcttcta ctgtttctac ccgctcaaca attattagcg ggacttctgg cctttcttct
7201 ttgactagga gctcttttaa ttcccagccc acctcctctt cttctcggac tagcgaatgg
7261 gtgcgtggtc aaaacagggc gctggagccc tacatgaggg gagcgctgca aactgcttac
7321 gtgacgcctc cctctagtag agcgtctagc aatggcacag tctcaaccgt gc
//