Typing tool
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Typing tool
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Complete norovirus genomes
| MT242482 | GII.1 | |
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| GII.P33 |
ORF1: 1..5106
ORF2: 5087..6694
ORF3: 6694..7467
LOCUS MT242482 7467 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 082_GII.Pg_GII.1_Ananas nonstructural
polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MT242482
VERSION MT242482.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7467)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7467)
AUTHORS Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (25-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr
Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao
Paulo 01246902, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7467
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="082_GII.Pg_GII.1_Ananas"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="09-Dec-2015"
/note="genotype: GII.Pg_GII.1"
gene 1..5106
/gene="ORF1"
CDS 1..5106
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QIQ42238.1"
/translation="MKMASNDASAAAAATSNNDIAKSSSDGVLSSMAVTFKRALGARP
KQPPPRETEQKQKPPRPPTPELIKKIPPPPPNAENDIVVSYSAKDGVSGLPELSTVRQ
PDGTNTAFSVPPLNQRENKDAKEPLPGTILEMWDGEIYHYGLYVERGLVLGVHKPPAA
ISLAKVELTPLSLYWRPVYTPQYLISPETLKKLHGETFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDII
GKLRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLIMKWF
FPKKDEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKL
STKSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAR
DLAKKVAATLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELAD
TCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDV
EKAKRDFPGQPDMWKDAFRSDFSHIKLMLAPQGGFDKNGNTPHGRGVMKTLTSGSLIA
RASGLLHERLDEYELQGPTPTTFNFDQNKVFAFRQLAAENKYGLVDTMRVGSQLKNVK
TVSELKQALKNISIRKCQIVYGGLTYSLESDGKGNVRVEKVQSPAVQTNNELTGALHH
LRCARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQAEDEEETTSKD
GCPKPKDEEEFVISSEDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREER
NGKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERVSLG
LVTGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWV
SPSLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAP
EGTVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTP
GDCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAPI
LGPGNAPKLSTKTKFWRSSTSPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFT
EPRGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTFAQACASLDKTTSSGYPHHVRKNE
HWNGESFTGKLADQASKANLMFEEGKHMTPVYTGALKDELVKTDKIYGKIKKRLLWGS
DLATMIRCARAFGGLMDELKAHCVTLPIRVGMNTNEDGPIIFGKHSRYTYHYDADYSR
WDSTQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVP
CTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAK
LKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTR
GPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPR
QEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 1..996
/gene="ORF1"
/product="p48"
mat_peptide 997..2094
/gene="ORF1"
/product="NTPase"
mat_peptide 2095..2631
/gene="ORF1"
/product="p22"
mat_peptide 2632..3030
/gene="ORF1"
/product="VPg"
mat_peptide 3031..3573
/gene="ORF1"
/product="Pro"
mat_peptide 3574..5103
/gene="ORF1"
/product="RdRp"
gene 5087..6694
/gene="ORF2"
CDS 5087..6694
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QIQ42239.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPFLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPLENLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPVPIDELYTSPNEGVVVQPQNGRSTLDGELLGTT
QLVPSNICALRGRINAQVPDDHHQWNLQVTNANGTPFDPTEDVPAPLGTPDFLANIYG
VTSQRNPDNTCRAHDGVLATWSPKFTPKLGSVVLGTWEEQDLDLNQPTRFTPVGLYDT
NHFDQWILPNYSGRLTLNMNLAPSVAPLFPGEQILFFRSHIPLKGGKSNGAIDCLLPQ
EWIQHFYQESAPSPTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6694..7467
/gene="ORF3"
CDS 6694..7467
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QIQ42240.1"
/translation="MAGAFVAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIALRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGATKTTAFSGGFTSSPNTRTVDLPRKTSTTPASTPISRPSSSASTVSTRSTI
VSGTSGLSSLTRSSFNSQPTSSSSRTSEWVRSQNRALEPYMRGALQTAYVTPPSSRAS
SNGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgctg ctaccagcaa caacgacatc
61 gcaaaatctt caagtgacgg agtactaagt agtatggctg tcacttttaa acgagccctc
121 ggggcccggc ctaaacagcc gcccccgagg gaaacagaac aaaaacaaaa acctccacga
181 ccgcccaccc cggagttaat taaaaagatt ccacctcccc cgcccaacgc ggagaacgat
241 atagtggtat cctatagtgc caaagatggt gtctccggtc tgcctgagct atccaccgtc
301 aggcagccag atgggacaaa cacagcattt agtgtccccc cactcaacca gagggaaaac
361 aaagatgcta aagaaccgct gcctggcacc atcttggaaa tgtgggacgg agagatttat
421 cactacggct tgtacgtgga gcggggcttg gtgcttgggg tgcacaaacc accagcggct
481 attagccttg caaaggttga actaacacca ctgtctctgt actggagacc agtgtacacc
541 cctcagtacc tcatatcccc ggaaactctc aaaaagctac atggagagac attcccttac
601 acggcctttg acaacaactg ttacgccttt tgttgttggg tcttggatct aaatgactct
661 tggctcagca ggaggatgat acagagaaca actggcttct tcagacccta ccaggactgg
721 aacaggaaac ctctccccac catggatgat tccaaattga aaaaggtggc taatatagtc
781 ctgtgtgcat tgtcatcact attcaccagg cccattaagg acataatagg aaaactaagg
841 cccctaaaca tactcaatat actagcttcc tgcgactgga ctttcgcagg aatagtggaa
901 tccctaattc tccttgcaga actcttcgga gttttctgga cacccccaga tgtgtctgcg
961 atgatcgccc ccttactagg cgactacgaa ctacagggac ctgaagatct cgctgtggaa
1021 ctcgtaccag tagtaatggg ggggataggt ttggttctag gtttcaccaa ggagaagatt
1081 ggcaagatgc tatcatctgc cgcgtccacc ctcagagctt gtaaagacct tggagcatat
1141 ggattggaaa ttctgaaatt gatcatgaaa tggttcttcc cgaagaaaga tgaggcgaat
1201 gaacttgcaa tggtgagatc cattgaggat gcagtgctag accttgaagc aattgagaac
1261 aatcacatga ccaccctact caaagacaaa gacagcttag caacctacat gaagactctg
1321 gaccttgagg aggagaaagc taggaaactc tccaccaaat ccgcttctcc tgatattgtg
1381 ggcacaatca attcgcttct ggcacggatt gcagctgccc gttccctggt acatcgggca
1441 aaagaagagc tttccagtag gccaagaccc gttgttgtca tgatatcagg aaaaccaggg
1501 atagggaaaa cccacctcgc cagagatttg gcaaagaaag ttgcagccac cctcacagga
1561 gaccagaggg tgggcctcat cccacggaat ggtgtcgatc actgggatgc atacaaaggt
1621 gagagagtcg tcctttggga tgactatgga atgagtaacc ccatccacga cgcccttagg
1681 ctacaagaac ttgctgacac ttgcccccta acattaaatt gtgatagaat tgagaacaaa
1741 ggaaaggtct ttgacagtga tgccataatc attacaacta atctggctaa cccagcacca
1801 ctggactatg tcaattttga agcatgttcg aggcgcatcg acttcctagt gtatgctgat
1861 gcccccgatg ttgaaaaagc aaaacgcgac ttcccagggc agcctgacat gtggaaggat
1921 gcttttagat ctgacttctc acacataaaa ctgatgttgg ctcctcaggg tggttttgat
1981 aagaatggca acaccccaca tggaagaggt gtcatgaaaa ccctcacatc tggctccctc
2041 attgcccgtg cttcaggact cctccacgaa agactggatg agtacgagct ccaagggcca
2101 acacccacaa ccttcaattt cgaccaaaac aaggtgttcg cctttagaca gcttgccgct
2161 gaaaataagt acgggctggt ggacaccatg agagtgggaa gccagctcaa gaatgtcaag
2221 actgtgtcag agctcaaaca ggcacttaag aacatttcaa ttagaaagtg ccagatagtc
2281 tatggtggtc tcacctattc acttgaatct gatggcaaag gtaatgtgag ggttgagaag
2341 gtgcaaagtc cagctgtgca gaccaacaat gagctaactg gcgcactaca ccacctgagg
2401 tgcgctagga tcagatatta tgttaagtgt gtccaggaag ctttgtattc catcatccaa
2461 attgctggag ccgcgtttgt caccacgcgc attgcaaagc gcatgaacat acaaaacctc
2521 tggtccagac cacaggcaga ggatgaggaa gagaccacca gcaaagacgg gtgcccaaaa
2581 ccaaaggatg aagaggagtt tgtcatctcg tctgaagaca tcaaagctga aggtaagaag
2641 ggaaagaaca agtctggccg cggcaagaaa cacacagcct tctcgagtaa gggtcttagt
2701 gatgaggagt acgatgagta caagagaatc agagaagaaa gaaatggcaa gtactccata
2761 gaagaatacc tccaagacag agacaagtac tatgaagagg ttgccatagc cagggccact
2821 gaagaggact tctgtgagga agaagaggcc aagatccggc agaggatttt cagaccaaca
2881 aggaaacaac gcaaggagga gagggtttca ctcggactgg tcacaggctc agaaatcagg
2941 aagaggaacc cggatgactt caaacctaaa ggaaagttgt gggctgatga cgacaggagt
3001 gtcgattaca atgaaaaact cagttttgaa gctcccccaa gcatttggtc gagaatagtc
3061 aactttggat caggttgggg cttctgggtc tcaccaagcc tttttataac atccacccat
3121 gtcatacctc aaggggcaca agagttcttc ggtgtttcca tcaaacagat ccaaattcat
3181 aagtcaggtg agttctgccg actaagattc ccaaagccaa ttagaactga tgtgacaggt
3241 atgatcctag aggagggggc ccctgaaggc actgtggcca cactgctcat aaagaggcca
3301 actggagagc tgatgccact agcggctaga atgggcaccc atgcaactat gaagatccaa
3361 ggccgaactg tcgggggaca gatggggatg ctcctgacag gatccaacgc caagagcatg
3421 gatctgggca ctacaccagg tgactgtgga tgcccatata tctacaaaag aggaaatgac
3481 tacgtggtca tcggggtcca cacagctgcc gcccgcggag ggaacactgt tatctgtgca
3541 acccaaggaa gtgaaggcga ggccgtcctt gaaggtggtg acaacaaagg cacctattgt
3601 ggcgccccaa tcctaggccc aggaaatgcc cccaaactca gtactaaaac taaattctgg
3661 aggtcctcaa catcaccact cccacctggc acctatgaac cagcttacct cggaggtaaa
3721 gaccccaggg tgaaaggtgg tccctcatta caacaagtta tgagagacca attgaaaccg
3781 ttcacagaac ccagaggtaa accaccaaag cctagtgtat tggaagcagc caaaaagaca
3841 atcattaatg tccttgagca aactatagat ccaccccaga aatggacgtt cgcacaggcg
3901 tgcgcatccc ttgataaaac gacctctagt ggctacccgc accacgtgcg gaagaatgaa
3961 cattggaatg gggaatcttt cacagggaag ttggctgatc aggcttcaaa ggctaattta
4021 atgtttgagg aaggaaaaca catgacacca gtctatacag gagctctcaa ggatgagtta
4081 gtcaaaactg acaaaatata tggtaagatc aagaaaaggt tattatgggg ctcagatctg
4141 gcaaccatga ttcgttgcgc tcgagcgttc ggagggttga tggatgaact caaggcccac
4201 tgtgtcacac tccccatcag ggtggggatg aacacgaatg aagatggtcc catcattttt
4261 gggaaacact ctaggtacac ctaccattat gatgcagact actctcgatg ggactcaaca
4321 cagcagagag ctgttttagc tgcagcccta gagatcatgg taaagttttc cccagaacca
4381 cacctggctc aaattgtcgc agaagatctc ctatctccta gcgttatgga cgtgggcgat
4441 ttcaaaatat caatcactga aggactcccc tctggggtgc cttgcacctc acaatggaac
4501 tccattgctc attggcttct cacgctctgt gcgctctctg aggtaacaga tttatctcct
4561 gacatcatcc aagcaaactc actcttctct ttctatggtg atgatgaaat tgtgagcaca
4621 gacattaaat tagatccaga aaggctaaca gccaaactaa aagagtatgg tctcaagcca
4681 acccgcccgg acaagactga agggcctttg gtcatttctg aggacttaga tggtctgacc
4741 tttttgcgga gaactgtgac ccgtgatcca gcaggttggt ttggaaaatt ggaacaaagc
4801 tcaatactaa gacagatgta ttggaccagg ggccccaatc atgaagaccc ctctgaaaca
4861 atgataccac attcccaacg acccatacag ttgatgtccc tattgggtga agctgcattg
4921 catggcccat cgttctacag caaaatcagc aaattggtca tctcagagtt gaaagaaggt
4981 ggcatggact tttacgtgcc aagacaagag ccaatgttcc ggtggatgag gttctcagac
5041 ttgagcacgt gggagggcga tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc
5101 gaatgacgcc gctccatcta atgatggcgc agccggtctc gtaccagagg tcaacaacga
5161 gacgatggca cttgagccgg tggctggggc ttctatagct gcccctttaa ctggccaaaa
5221 taatgtgata gacccctgga ttagaatgaa ttttgtccaa gctccaaatg gtgaatttac
5281 agtgtccccc cgtaattccc caggtgaagt gttgttgaat ttggaattag gccctgaatt
5341 aaatccattc ctggcacacc tttcaagaat gtataatggt tatgctggtg gggttgaagt
5401 gcaggtgcta cttgctggga atgcgttcac agcaggaaaa ctagtgtttg cagcaatccc
5461 cccacatttc cctcttgaga atctgagtcc tggtcaaatt acaatgttcc ctcacgtgat
5521 tattgatgtt agaactttag aacctgtcct cttgccttta ccagatgtta gaaataattt
5581 ctttcattac aatcagcagc ctgagccccg tatgagactt gtggctatgt tgtatactcc
5641 tcttagatct aatggctctg gtgatgatgt gttcacagtc tcttgtaggg tcctcacccg
5701 cccctctcca gattttgatt ttaattattt ggttccccca actgtggaat ctaaaactaa
5761 accatttacc ctgccaatat tgaccattgg agaattgtca aattctaggt tcccagtgcc
5821 aatagatgaa ttgtatacca gccccaatga aggagtggtt gtgcaacctc aaaatggcag
5881 atcaacactc gatggtgaac tgcttggtac cacacaactt gtaccatcaa acatctgtgc
5941 cttgcgaggg cgcatcaacg cccaagtgcc agacgaccac catcaatgga acttgcaggt
6001 tacaaacgca aatgggactc ccttcgaccc cactgaagat gtccctgcac cattgggcac
6061 gccggatttc ttggcaaaca tctacggagt tactagccag aggaaccctg acaacacttg
6121 ccgtgcccat gatggggttt tggcaacctg gagccctaaa tttacaccca agttaggatc
6181 tgtggttttg ggcacttggg aagaacaaga tcttgatctc aaccaaccta ccagattcac
6241 acctgttggt ttgtatgata caaaccactt tgatcagtgg attctaccca actactctgg
6301 aagattgacc ttaaacatga atttggcgcc ctccgttgct ccccttttcc caggtgaaca
6361 aatactcttc tttaggtccc acataccact taaaggaggc aaatccaatg gtgccattga
6421 ctgtctactc cctcaggaat ggatccagca tttctatcag gaatcagccc cgtcacccac
6481 agacgttgct ctgattaggt acaccaaccc tgacacgggc cgtgtccttt ttgaggccaa
6541 actacatagg caggggttca ttacagtagc aaattctggt tctagaccta ttgttgtccc
6601 ccctaatggc tattttaggt ttgattcttg ggttaatcag ttttactctc tcgcccccat
6661 gggaactggg aatgggcgca gaagggtgca gtaatggctg gagcttttgt agcaggtctt
6721 gccggtgata tagtcaccaa tagcattggt tcacttgtga acgctggagc caatgcaata
6781 aaccaaaaag tagactttga aaacaacaaa caactacagc aggcctcttt caaccatgat
6841 aaggaaatgt tgcaagctca aattcaggcc acaaaacaat tacaggctga catgattgcg
6901 ctcagacaag gggtgttgac cgcaggcggc ttctccccta ctgatgcagc aagaggggcg
6961 gttaatgcgc ccatgacgca agtcttggac tggaatggga ctaggtactg ggcccccgga
7021 gccaccaaaa caactgcttt ctccggtggg ttcacaagct ctcccaatac caggactgtt
7081 gatttgccta ggaaaacatc aaccacacca gcctccacac ctatatctag acctagttct
7141 tctgcttcta ctgtttctac ccgctcaaca attgttagcg ggacttctgg cctttcttct
7201 ttgactagga gctcttttaa ttcccagccc acctcctctt cttctcggac tagcgaatgg
7261 gtgcgtagtc aaaacagggc gctggagccc tacatgaggg gagcgctgca aactgcttac
7321 gtgacgcctc cctctagtag agcatccagc aatggcacag tctcaaccgt gccaaaagaa
7381 gttttggact cctggacatc tgtgttcaac acccacagac aaccgctttt cgctcatctc
7441 cgtcggagag gggagtcaca ggtttag
//