Typing tool
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Typing tool
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Complete norovirus genomes
| MT233269 | GII.17 | |
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| GII.P17 |
ORF1: 1..4905
ORF2: 4886..6502
ORF3: 6502..7281
LOCUS MT233269 7281 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 247_GII.P17_GII.17_Araguaina nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION MT233269
VERSION MT233269.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7281)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7281)
AUTHORS Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (23-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr
Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao
Paulo 01246902, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7281
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="247_GII.P17_GII.17_Araguaina"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Brazil"
/collection_date="06-Oct-2014"
/note="genotype: GII.P17_GII.17"
gene <1..4905
/gene="ORF1"
CDS <1..4905
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QIP88938.1"
/translation="KRIPPPPPNGEDEPKIVYKVGEGVSGLPNLTTVAQPDAQNTAYS
VPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIELT
PLSLYWRVVYTPQYLIAPETLKNLSGETFPYTAFDNNCYAFCCWVLELNDSWLSRRMI
QRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNIL
NVLATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVP
VVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANE
LAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDI
VGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVAST
LSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCD
RIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPG
QPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHER
MDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAI
KNISIKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELVGALHHLRSARIRYY
VKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDKGGCPKPRDED
DLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEY
LQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRK
RNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITST
HVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILI
KRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIY
KRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKL
STKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNP
NVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTG
KLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCA
RAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAV
LEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIA
HWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPT
RPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSE
TMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMR
FSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..795
/gene="ORF1"
/product="p48"
mat_peptide 796..1893
/gene="ORF1"
/product="NTPase"
mat_peptide 1894..2430
/gene="ORF1"
/product="p22"
mat_peptide 2431..2829
/gene="ORF1"
/product="VPg"
mat_peptide 2830..3372
/gene="ORF1"
/product="Pro"
mat_peptide 3373..4902
/gene="ORF1"
/product="RdRp"
gene 4886..6502
/gene="ORF2"
CDS 4886..6502
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QIP88939.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV
ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDDDFQLQPTKFTPVGIND
DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL
IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6502..7281
/gene="ORF3"
CDS 6502..7281
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QIP88940.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDREMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPVKPRSLAPSSSSSSVYSMSTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 aagagaatac ccccaccccc acccaatggc gaggatgaac caaagatagt gtataaggtg
61 ggagagggtg tgtctgggct gcccaaccta acaactgtgg cacagcctga cgcacaaaac
121 acagcttata gtgttccccc acttagccag agagaagtcg gcgaagctaa agaaccgctg
181 cctggctcca ttctggaaat gtgggatggt gagatctacc actatgggct gtatgttgag
241 cgggggcatg tactcggagt acacaaacca cctgctgcaa taagccttgc caaaattgaa
301 ttaacaccgc tgtctctcta ctggagagtg gtctacactc cccagtattt gatagctcca
361 gaaactctta agaacttgag tggagagact ttcccataca cggcctttga caacaactgt
421 tatgccttct gttgttgggt cttagaactc aacgactcct ggcttagcag gagaatgatt
481 caaagaacaa ctgggttctt cagaccgtat caggattgga acagaaaacc cttaccaacc
541 atggatgaac cgaaaatcaa gaaggccgcg aatgctgttc tgtgcgctct ctcctcactc
601 ttcactagac ccattaagga catcattgga aagcttagac cactgaacat tcttaatgta
661 ctggcaactt gtgactggac ttttgcaggc atagtggaat ccatgatcct tcttgctgaa
721 ctctttgggg tgttctggac ccccccagat gtgtctgcga tgattgctcc cttactcggt
781 gactacgaga tgcaaggccc cgaagacctg gccgtggaac ttgtgcccgt ggtaatggga
841 ggaataggtt tggtgttagg attcaccaag gaaaagatcg gcaagatgct ttcatcagct
901 gcgaccacac ttagggcctg caaggatcta ggatcttatg gattggagat actcaagttg
961 gtcatgaagt ggttcttccc caagaaggag gaggctaacg aactagccat ggtgagggcc
1021 attgaggatg cagtcctgga tttggaggca atagaaaata accacatgac cacccttctc
1081 aaggataaag acagcctggc cacatacatg aggactcttg acttggaaga agagaaagca
1141 aggaaactgt caaccaaatc ggcgtcacct gacatcgtgg gtacaataaa ctcattattg
1201 gcaaggatag cagccgccag gtcactggtc cacaaggcta aggaggagct ctcgagcaga
1261 cagagacctg ttgttgtaat gatatcaggt agaccaggta taggaaagac ccatctagcc
1321 agagagctag ccaagaaagt tgcgtcaaca ctgtcaggcg accaaaggat tggactgata
1381 cctagaaatg gcgtcgacca ttgggacgcc tacaagggag aaagggtggt tctgtgggat
1441 gattatggta tgagcaaccc tatacaggac gcactgaggc tccaagaatt ggctgacacc
1501 tgtcctctga ccctgaattg tgacaggatt gaaaacaaag gaaaagtgtt cgacagtgat
1561 gccataatta taacaaccaa ccttgcaaac ccagcaccac tagactatgt caactttgag
1621 gcctgctcta gacgcataga cttcttggtg tatgcagacg cacctgacat cgagaaggct
1681 aagcgtgatt tccctggcca accagatatg tggaaagacc attacagacc agacttcaca
1741 cacattaaac ttcagctggc accacaggga ggttttgaca aaaatggcaa caccccacat
1801 ggtaaaggtg tggtgaagtc tctgacgatt ggttctctga tcgccagggc ttctggcttg
1861 ctccacgaga gaatggatga attcgagctc cagggctctg acctgccaac cttcaatttt
1921 gaccgcaaca aagtcgccgc cttcagacaa ttagcagctg aaaacaaata tggtcttatg
1981 gacacactga gggtcggcaa ccaactgaaa agtgtcaaga ccctggatga actgaaacag
2041 gccataaaga acatcagtat caagaagtgc cagatagtgt ataatggatg cacctatacc
2101 atggaatctg atgggaggag caaggttgtg gttgaaaagg tacaaaacgc aacagttcaa
2161 accaacaatg aacttgtagg ggcactccac cacctgagat ctgcaaggat aagatactat
2221 gttaaatgtt tccaagaagc catttactct ctactccaaa ttgctggtgc agccttcgtc
2281 acctcacgca tcgtgaggcg catgaatatc tcaaacctct ggtcgaaacc acccatcgag
2341 gagggtgatg agcctgaaga caaaggagga tgccccaagc ccagggatga agatgacctc
2401 actattgact ctagagacat taaagtggaa gggaagaagg gcaagaacaa gtctggtcgg
2461 ggcaagaaac acacagcctt ctcatccaag ggcctcagtg atgaagagta cgatgagtac
2521 aagagaatca gagaggagag gaatggcaaa tactcaatag aggaatacct ccaagatagg
2581 gacagatact atgaagagct tgccattgct aaggccactg aggaggactt ctgtgaagag
2641 gaggagatca aaatccgcca gagaatcttc cgacccacca ggaagcagcg gaaagaggaa
2701 agggccacgc ttgggcttgt cacaggatcg gaaatcagaa agaggaatcc agatgacttt
2761 aaaccaaaag gaaaattgtg ggctgatgac aacaggagcg tggattacaa tgagaggata
2821 gattttgagg ctcccccgag tgtttggtct aggatagtca actttggcac aggctgggga
2881 ttctgggttt ctccaagtct ctttataact tcaacacacg tcataccaaa aggaatcact
2941 gaggcctttg gagtgcccat aaaccaaatc caaattcaca aatctggaga attttgccgc
3001 ttgcggtttc caaagccaat caggccagac gtgagtggga tgatcttgga agagggtgcc
3061 cctgaaggca ctgttgtgtc tattctcatc aaaaggacaa caggggagct gatgcctctt
3121 gcagtcagaa tggggaccca tgccacaatg aaaatccaag gtagaacggt gggtggtcag
3181 atgggtatgc ttctcactgg ctcaaatgct aaaagcatgg atctaggcac aacgccaggt
3241 gactgcgggt gtccatacat atacaaaagg ggcaatgact tcgtggccat tggggtgcac
3301 actgcagcag cgcgtggagg caacacggtc atatgtgcca cacagggaag tgaaggtgaa
3361 gccactcttg aaggaggtga taacaagggt acctattgtg gagcccccat tttgggacct
3421 ggcaatgcac caaaattgag cacaaaaaca aaattctgga gatcctctaa cgcaccgctt
3481 cccccaggta cttatgaacc agcatacctt ggtgggagag acccgcgcgt gaagggaggc
3541 ccatctctgc aacaagttat gagagaccaa cttaaacctt ttacagagcc cagagggaag
3601 ccaccaaacc caaatgtcct agagtcagca aagaagacta tcatcaatgt tctggaacaa
3661 accattgacc cccctcaaaa gtggtcatat gcccaagctt gtgcatccct cgacaagaca
3721 acctccagtg gatacccgca ccacgtccgg aagaatgact attggagtgg tgaatccttc
3781 acagggaaac ttgcagacca ggcttcaaaa gcaaatctca tgtatgagga aggcaagcac
3841 atgcaaccag tttacaccgc agcactcaaa gacgagctcg tgaaaactga caaaatttat
3901 ggcaagatca agaaaagact cctgtggggt tctgacctct ccaccatgat ccgatgcgcc
3961 agagcatttg gtggtctcat ggatgagctc aaagcaaatt gtattacact ccctatcaga
4021 gttggtatga atatgaatga agacggtccc ataatatttg agaaacactc caggtacagg
4081 taccactatg atgctgatta ctcccgctgg gactccacac aacagcgggc agtgctggaa
4141 gcggcacttg aaatcatggt gagattttct gctgagccac agctggcaca aatagtggca
4201 gaggacctgc tgtcaccaag tgtggttgat gtgggcgatt tcaaaatcgc tatcaatgaa
4261 ggcctaccat ctggcgtgcc ttgcacctca caatggaatt ctattgccca ctggttactc
4321 accctgtgtg ccctttctga agtgacagga ctaggtcctg acatcataca agccaactcc
4381 atgtactcct tctatggtga tgatgagatt gtgagcacag acataaaatt ggacccagag
4441 aaattgaccg cgaaactcaa agaatatggc cttaaaccca ctcggcccga caagactgag
4501 gggccgctgg tgattagtga agacctgaat gggttgactt tcctccgccg aacagtcacc
4561 cgtgatccag caggttggtt tggaaagttg gaccaaaact ccatcctcag gcagttgtac
4621 tggacaagag gacccaacca tgaagacccc agtgagacca tgataccaca cgcacagaga
4681 cctgtgcagc tcatggcact actaggagaa tcctccctac atggaccctc attttacagc
4741 aaggttagca aactggtcat atctgaactt aaagagggag gaatggattt ttatgtgccc
4801 agacaagagt caatgttcag atggatgagg ttctcagatc taagcacatg ggagggcgat
4861 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa
4921 tgatggtgct gctggcctcg taccagaggg caacaacgag acccttcccc tagaaccagt
4981 tgcgggcgca gctatagccg cacccgtcac tggccaaaac aacataattg acccctggat
5041 tagaacaaat tttgtacaag caccaaatgg agagttcaca gtgtcaccca gaaactctcc
5101 tggagaaatt ttattaaacc tagagttggg ccctgatttg aacccttatt tggctcatct
5161 gtcaaggatg tacaatgggt atgctggtgg agtggaagtt caggttctcc tggcagggaa
5221 cgcgttcact gccggaaaga tcctcttcgc cgccgtcccg ccaaatttcc cagtggaatt
5281 cttaagccca gcccagatta caatgctccc acatttaata gtagatgtca ggactcttga
5341 accaattatg atcccactcc ctgatgttag gaatacattc ttccattata acaaccagcc
5401 caacagccgc atgagattag tggctatgct ctataccccc cttagatcta atggctcagg
5461 tgatgatgtc tttactgtct cttgcagggt tttgactagg cctactcctg attttgagtt
5521 cacttattta gtgccacctt ctgttgaatc taagactaag cctttttcct tacctatttt
5581 aaccctttct gagctcacaa actcgaggtt cccagtcccc atcgattcgc ttttcaccgc
5641 ccagaataat gtgttgcagg tgcagtgtca aaatggcagg tgcacacttg atggtgagtt
5701 acaaggcaca acccagttgc tcccatctgg catctgtgca ttcagaggac gggtgacagc
5761 agaaactgac catcgtgaca agtggcacat gcaactgcaa aacctcaatg gcacaacata
5821 tgacccaacc gatgatgtgc cagccccgct gggtacacct gacttcaagg gcgtcgtgtt
5881 tggggtagca agccaaagaa atgtgggtaa tgatgcgcct ggctcaacca gggcccatga
5941 ggcggtgatt tcaacctata gcccccaatt tgtccccaaa ttaggttctg tcaattttag
6001 aagtaatgat gatgatttcc aattgcagcc gacaaaattc acaccagtgg gcatcaatga
6061 cgatggtgac cacccgttca gacagtggga actaccagac tattcagggc tgcttacctt
6121 gaatatgaac cttgcccccc cggttgctcc aaatttccct ggtgaacaat tattattctt
6181 cagatctttt gtgccatgct caggaggcta taaccaaggc attgtagatt gtcttattcc
6241 ccaagaatgg atccaacact tctatcagga atcagcgccc tcccagtcag acgtagccct
6301 aatcaggtat gttaatcccg acacgggacg tacactgttt gaagcaaaat tgcacagatc
6361 tggttacatt actgtggctc actctggaga ctatcctctt gttgttccgg ctaatggata
6421 ctttagattt gattcttggg taaatcagtt ttactcactc gccccaatgg gaactgggaa
6481 tgggcgaagg agggctcagt aatggctgga gctttcattg caggattggc aggcgacatg
6541 ctcacgtcat ctgtgggctc cctggtgaac gcaggggcaa acgccatcaa ccaaaagata
6601 gactttgaaa acaacaaaca actccagtct gcttcctttc agcatgatag agagatgctc
6661 caagcgcagg tgaaggcaac caagcagctg caatctgaaa tgatagccct aaaacagggg
6721 gttttggccg caggcggctt ttcccccact gatgcagcaa ggggagccat tggtgcaccc
6781 atgacaaagg tgcttgactg gtctggcact cgatactggg cacccaattc cacaaagaca
6841 actggttatt cgggacaatt cacctcttca cctgtgcaca tgcctagccc aaatgctcca
6901 caatcaaaac ctgtaaagcc taggtctcta gctccttctt cttcttctag tagtgtctat
6961 agtatgtcta ctcaatcaac tcatttaaca tctggctctt ctagtaatgc ttcttctgcc
7021 tctacaaaat tgacaaactt aagctctggc tcctctcaaa acagaacagc agagtgggtg
7081 aaccaacaga gaagtcttag ccctttcatg agtggcgcac tcaatatctc acatgtcacg
7141 ccaccctcaa gtagggcttc cagttctggg acggtctcga ccgtgcccaa ggaagttttg
7201 gactcctgga cgtctgcgtt taatacacac agacagccgc tcttcgcaca cctcagagtg
7261 aggggggagt cacgtgttta g
//