Typing tool
|
Complete norovirus genomes
MT233269 | GII.17 | ||
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GII.P17 |
ORF1: 1..4905 ORF2: 4886..6502 ORF3: 6502..7281LOCUS MT233269 7281 bp RNA linear VRL 29-JUN-2021 DEFINITION Norovirus GII isolate 247_GII.P17_GII.17_Araguaina nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MT233269 VERSION MT233269.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7281) AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R., Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M., Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A. TITLE Norovirus strains in patients with acute gastroenteritis in rural and low-income urban areas in northern Brazil JOURNAL Arch Virol 166 (3), 905-913 (2021) PUBMED 33462673 REFERENCE 2 (bases 1 to 7281) AUTHORS Luchs,A. TITLE Direct Submission JOURNAL Submitted (23-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao Paulo 01246902, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 9 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7281 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="247_GII.P17_GII.17_Araguaina" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Brazil" /collection_date="06-Oct-2014" /note="genotype: GII.P17_GII.17" gene <1..4905 /gene="ORF1" CDS <1..4905 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QIP88938.1" /translation="KRIPPPPPNGEDEPKIVYKVGEGVSGLPNLTTVAQPDAQNTAYS VPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIELT PLSLYWRVVYTPQYLIAPETLKNLSGETFPYTAFDNNCYAFCCWVLELNDSWLSRRMI QRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNIL NVLATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVP VVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANE LAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDI VGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVAST LSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCD RIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPG QPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHER MDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAI KNISIKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELVGALHHLRSARIRYY VKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDKGGCPKPRDED DLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEY LQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRK RNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITST HVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILI KRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIY KRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKL STKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNP NVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTG KLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCA RAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAV LEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIA HWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPT RPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSE TMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMR FSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..795 /gene="ORF1" /product="p48" mat_peptide 796..1893 /gene="ORF1" /product="NTPase" mat_peptide 1894..2430 /gene="ORF1" /product="p22" mat_peptide 2431..2829 /gene="ORF1" /product="VPg" mat_peptide 2830..3372 /gene="ORF1" /product="Pro" mat_peptide 3373..4902 /gene="ORF1" /product="RdRp" gene 4886..6502 /gene="ORF2" CDS 4886..6502 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QIP88939.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDDDFQLQPTKFTPVGIND DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6502..7281 /gene="ORF3" CDS 6502..7281 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QIP88940.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDREMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPVKPRSLAPSSSSSSVYSMSTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 aagagaatac ccccaccccc acccaatggc gaggatgaac caaagatagt gtataaggtg 61 ggagagggtg tgtctgggct gcccaaccta acaactgtgg cacagcctga cgcacaaaac 121 acagcttata gtgttccccc acttagccag agagaagtcg gcgaagctaa agaaccgctg 181 cctggctcca ttctggaaat gtgggatggt gagatctacc actatgggct gtatgttgag 241 cgggggcatg tactcggagt acacaaacca cctgctgcaa taagccttgc caaaattgaa 301 ttaacaccgc tgtctctcta ctggagagtg gtctacactc cccagtattt gatagctcca 361 gaaactctta agaacttgag tggagagact ttcccataca cggcctttga caacaactgt 421 tatgccttct gttgttgggt cttagaactc aacgactcct ggcttagcag gagaatgatt 481 caaagaacaa ctgggttctt cagaccgtat caggattgga acagaaaacc cttaccaacc 541 atggatgaac cgaaaatcaa gaaggccgcg aatgctgttc tgtgcgctct ctcctcactc 601 ttcactagac ccattaagga catcattgga aagcttagac cactgaacat tcttaatgta 661 ctggcaactt gtgactggac ttttgcaggc atagtggaat ccatgatcct tcttgctgaa 721 ctctttgggg tgttctggac ccccccagat gtgtctgcga tgattgctcc cttactcggt 781 gactacgaga tgcaaggccc cgaagacctg gccgtggaac ttgtgcccgt ggtaatggga 841 ggaataggtt tggtgttagg attcaccaag gaaaagatcg gcaagatgct ttcatcagct 901 gcgaccacac ttagggcctg caaggatcta ggatcttatg gattggagat actcaagttg 961 gtcatgaagt ggttcttccc caagaaggag gaggctaacg aactagccat ggtgagggcc 1021 attgaggatg cagtcctgga tttggaggca atagaaaata accacatgac cacccttctc 1081 aaggataaag acagcctggc cacatacatg aggactcttg acttggaaga agagaaagca 1141 aggaaactgt caaccaaatc ggcgtcacct gacatcgtgg gtacaataaa ctcattattg 1201 gcaaggatag cagccgccag gtcactggtc cacaaggcta aggaggagct ctcgagcaga 1261 cagagacctg ttgttgtaat gatatcaggt agaccaggta taggaaagac ccatctagcc 1321 agagagctag ccaagaaagt tgcgtcaaca ctgtcaggcg accaaaggat tggactgata 1381 cctagaaatg gcgtcgacca ttgggacgcc tacaagggag aaagggtggt tctgtgggat 1441 gattatggta tgagcaaccc tatacaggac gcactgaggc tccaagaatt ggctgacacc 1501 tgtcctctga ccctgaattg tgacaggatt gaaaacaaag gaaaagtgtt cgacagtgat 1561 gccataatta taacaaccaa ccttgcaaac ccagcaccac tagactatgt caactttgag 1621 gcctgctcta gacgcataga cttcttggtg tatgcagacg cacctgacat cgagaaggct 1681 aagcgtgatt tccctggcca accagatatg tggaaagacc attacagacc agacttcaca 1741 cacattaaac ttcagctggc accacaggga ggttttgaca aaaatggcaa caccccacat 1801 ggtaaaggtg tggtgaagtc tctgacgatt ggttctctga tcgccagggc ttctggcttg 1861 ctccacgaga gaatggatga attcgagctc cagggctctg acctgccaac cttcaatttt 1921 gaccgcaaca aagtcgccgc cttcagacaa ttagcagctg aaaacaaata tggtcttatg 1981 gacacactga gggtcggcaa ccaactgaaa agtgtcaaga ccctggatga actgaaacag 2041 gccataaaga acatcagtat caagaagtgc cagatagtgt ataatggatg cacctatacc 2101 atggaatctg atgggaggag caaggttgtg gttgaaaagg tacaaaacgc aacagttcaa 2161 accaacaatg aacttgtagg ggcactccac cacctgagat ctgcaaggat aagatactat 2221 gttaaatgtt tccaagaagc catttactct ctactccaaa ttgctggtgc agccttcgtc 2281 acctcacgca tcgtgaggcg catgaatatc tcaaacctct ggtcgaaacc acccatcgag 2341 gagggtgatg agcctgaaga caaaggagga tgccccaagc ccagggatga agatgacctc 2401 actattgact ctagagacat taaagtggaa gggaagaagg gcaagaacaa gtctggtcgg 2461 ggcaagaaac acacagcctt ctcatccaag ggcctcagtg atgaagagta cgatgagtac 2521 aagagaatca gagaggagag gaatggcaaa tactcaatag aggaatacct ccaagatagg 2581 gacagatact atgaagagct tgccattgct aaggccactg aggaggactt ctgtgaagag 2641 gaggagatca aaatccgcca gagaatcttc cgacccacca ggaagcagcg gaaagaggaa 2701 agggccacgc ttgggcttgt cacaggatcg gaaatcagaa agaggaatcc agatgacttt 2761 aaaccaaaag gaaaattgtg ggctgatgac aacaggagcg tggattacaa tgagaggata 2821 gattttgagg ctcccccgag tgtttggtct aggatagtca actttggcac aggctgggga 2881 ttctgggttt ctccaagtct ctttataact tcaacacacg tcataccaaa aggaatcact 2941 gaggcctttg gagtgcccat aaaccaaatc caaattcaca aatctggaga attttgccgc 3001 ttgcggtttc caaagccaat caggccagac gtgagtggga tgatcttgga agagggtgcc 3061 cctgaaggca ctgttgtgtc tattctcatc aaaaggacaa caggggagct gatgcctctt 3121 gcagtcagaa tggggaccca tgccacaatg aaaatccaag gtagaacggt gggtggtcag 3181 atgggtatgc ttctcactgg ctcaaatgct aaaagcatgg atctaggcac aacgccaggt 3241 gactgcgggt gtccatacat atacaaaagg ggcaatgact tcgtggccat tggggtgcac 3301 actgcagcag cgcgtggagg caacacggtc atatgtgcca cacagggaag tgaaggtgaa 3361 gccactcttg aaggaggtga taacaagggt acctattgtg gagcccccat tttgggacct 3421 ggcaatgcac caaaattgag cacaaaaaca aaattctgga gatcctctaa cgcaccgctt 3481 cccccaggta cttatgaacc agcatacctt ggtgggagag acccgcgcgt gaagggaggc 3541 ccatctctgc aacaagttat gagagaccaa cttaaacctt ttacagagcc cagagggaag 3601 ccaccaaacc caaatgtcct agagtcagca aagaagacta tcatcaatgt tctggaacaa 3661 accattgacc cccctcaaaa gtggtcatat gcccaagctt gtgcatccct cgacaagaca 3721 acctccagtg gatacccgca ccacgtccgg aagaatgact attggagtgg tgaatccttc 3781 acagggaaac ttgcagacca ggcttcaaaa gcaaatctca tgtatgagga aggcaagcac 3841 atgcaaccag tttacaccgc agcactcaaa gacgagctcg tgaaaactga caaaatttat 3901 ggcaagatca agaaaagact cctgtggggt tctgacctct ccaccatgat ccgatgcgcc 3961 agagcatttg gtggtctcat ggatgagctc aaagcaaatt gtattacact ccctatcaga 4021 gttggtatga atatgaatga agacggtccc ataatatttg agaaacactc caggtacagg 4081 taccactatg atgctgatta ctcccgctgg gactccacac aacagcgggc agtgctggaa 4141 gcggcacttg aaatcatggt gagattttct gctgagccac agctggcaca aatagtggca 4201 gaggacctgc tgtcaccaag tgtggttgat gtgggcgatt tcaaaatcgc tatcaatgaa 4261 ggcctaccat ctggcgtgcc ttgcacctca caatggaatt ctattgccca ctggttactc 4321 accctgtgtg ccctttctga agtgacagga ctaggtcctg acatcataca agccaactcc 4381 atgtactcct tctatggtga tgatgagatt gtgagcacag acataaaatt ggacccagag 4441 aaattgaccg cgaaactcaa agaatatggc cttaaaccca ctcggcccga caagactgag 4501 gggccgctgg tgattagtga agacctgaat gggttgactt tcctccgccg aacagtcacc 4561 cgtgatccag caggttggtt tggaaagttg gaccaaaact ccatcctcag gcagttgtac 4621 tggacaagag gacccaacca tgaagacccc agtgagacca tgataccaca cgcacagaga 4681 cctgtgcagc tcatggcact actaggagaa tcctccctac atggaccctc attttacagc 4741 aaggttagca aactggtcat atctgaactt aaagagggag gaatggattt ttatgtgccc 4801 agacaagagt caatgttcag atggatgagg ttctcagatc taagcacatg ggagggcgat 4861 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa 4921 tgatggtgct gctggcctcg taccagaggg caacaacgag acccttcccc tagaaccagt 4981 tgcgggcgca gctatagccg cacccgtcac tggccaaaac aacataattg acccctggat 5041 tagaacaaat tttgtacaag caccaaatgg agagttcaca gtgtcaccca gaaactctcc 5101 tggagaaatt ttattaaacc tagagttggg ccctgatttg aacccttatt tggctcatct 5161 gtcaaggatg tacaatgggt atgctggtgg agtggaagtt caggttctcc tggcagggaa 5221 cgcgttcact gccggaaaga tcctcttcgc cgccgtcccg ccaaatttcc cagtggaatt 5281 cttaagccca gcccagatta caatgctccc acatttaata gtagatgtca ggactcttga 5341 accaattatg atcccactcc ctgatgttag gaatacattc ttccattata acaaccagcc 5401 caacagccgc atgagattag tggctatgct ctataccccc cttagatcta atggctcagg 5461 tgatgatgtc tttactgtct cttgcagggt tttgactagg cctactcctg attttgagtt 5521 cacttattta gtgccacctt ctgttgaatc taagactaag cctttttcct tacctatttt 5581 aaccctttct gagctcacaa actcgaggtt cccagtcccc atcgattcgc ttttcaccgc 5641 ccagaataat gtgttgcagg tgcagtgtca aaatggcagg tgcacacttg atggtgagtt 5701 acaaggcaca acccagttgc tcccatctgg catctgtgca ttcagaggac gggtgacagc 5761 agaaactgac catcgtgaca agtggcacat gcaactgcaa aacctcaatg gcacaacata 5821 tgacccaacc gatgatgtgc cagccccgct gggtacacct gacttcaagg gcgtcgtgtt 5881 tggggtagca agccaaagaa atgtgggtaa tgatgcgcct ggctcaacca gggcccatga 5941 ggcggtgatt tcaacctata gcccccaatt tgtccccaaa ttaggttctg tcaattttag 6001 aagtaatgat gatgatttcc aattgcagcc gacaaaattc acaccagtgg gcatcaatga 6061 cgatggtgac cacccgttca gacagtggga actaccagac tattcagggc tgcttacctt 6121 gaatatgaac cttgcccccc cggttgctcc aaatttccct ggtgaacaat tattattctt 6181 cagatctttt gtgccatgct caggaggcta taaccaaggc attgtagatt gtcttattcc 6241 ccaagaatgg atccaacact tctatcagga atcagcgccc tcccagtcag acgtagccct 6301 aatcaggtat gttaatcccg acacgggacg tacactgttt gaagcaaaat tgcacagatc 6361 tggttacatt actgtggctc actctggaga ctatcctctt gttgttccgg ctaatggata 6421 ctttagattt gattcttggg taaatcagtt ttactcactc gccccaatgg gaactgggaa 6481 tgggcgaagg agggctcagt aatggctgga gctttcattg caggattggc aggcgacatg 6541 ctcacgtcat ctgtgggctc cctggtgaac gcaggggcaa acgccatcaa ccaaaagata 6601 gactttgaaa acaacaaaca actccagtct gcttcctttc agcatgatag agagatgctc 6661 caagcgcagg tgaaggcaac caagcagctg caatctgaaa tgatagccct aaaacagggg 6721 gttttggccg caggcggctt ttcccccact gatgcagcaa ggggagccat tggtgcaccc 6781 atgacaaagg tgcttgactg gtctggcact cgatactggg cacccaattc cacaaagaca 6841 actggttatt cgggacaatt cacctcttca cctgtgcaca tgcctagccc aaatgctcca 6901 caatcaaaac ctgtaaagcc taggtctcta gctccttctt cttcttctag tagtgtctat 6961 agtatgtcta ctcaatcaac tcatttaaca tctggctctt ctagtaatgc ttcttctgcc 7021 tctacaaaat tgacaaactt aagctctggc tcctctcaaa acagaacagc agagtgggtg 7081 aaccaacaga gaagtcttag ccctttcatg agtggcgcac tcaatatctc acatgtcacg 7141 ccaccctcaa gtagggcttc cagttctggg acggtctcga ccgtgcccaa ggaagttttg 7201 gactcctgga cgtctgcgtt taatacacac agacagccgc tcttcgcaca cctcagagtg 7261 aggggggagt cacgtgttta g //