Typing tool
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Typing tool
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Complete norovirus genomes
| MT233268 | GII.17 | |
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| GII.P17 |
ORF1: 1..5109
ORF2: 5090..6706
ORF3: 6706..7485
LOCUS MT233268 7485 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 245_GII.P17_GII.17_Araguaina nonstructural
polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MT233268
VERSION MT233268.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7485)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7485)
AUTHORS Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (23-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr
Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao
Paulo 01246902, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7485
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="245_GII.P17_GII.17_Araguaina"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="30-Sep-2014"
/note="genotype: GII.P17_GII.17"
gene 1..5109
/gene="ORF1"
CDS 1..5109
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QIP88935.1"
/translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGAR
PKQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPKIVYKVGEGVSGLPNLTTVA
QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA
AISLAKIELTPLSLYWRVVYTPQYLIAPETLKNLSGETFPYTAFDNNCYAFCCWVLEL
NDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI
IGKLRPLNILNVLATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK
LSTKSASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV
KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELVGALH
HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDK
GGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT
PGDCGCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 1..999
/gene="ORF1"
/product="p48"
mat_peptide 1000..2097
/gene="ORF1"
/product="NTPase"
mat_peptide 2098..2634
/gene="ORF1"
/product="p22"
mat_peptide 2635..3033
/gene="ORF1"
/product="VPg"
mat_peptide 3034..3576
/gene="ORF1"
/product="Pro"
mat_peptide 3577..5106
/gene="ORF1"
/product="RdRp"
gene 5090..6706
/gene="ORF2"
CDS 5090..6706
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QIP88936.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV
ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDDDFQLQPTKFTPVGIND
DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL
IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6706..7485
/gene="ORF3"
CDS 6706..7485
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QIP88937.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDREMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPVKPRSLAPSSSSSSVYSMSTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgttgctg gcaaaaacaa caacaacgac
61 aaggagaaat cttcaagtga cagcttgttt tctaacatga ctgttacttt taagaaagcc
121 ctcggggcgc ggcctaaaca accgcccccg ggagaaacaa aacaaataca aaaaccacca
181 aggccaccga caccggaatt ggtgaagaga atacccccac ccccacccaa tggcgaggat
241 gaaccaaaga tagtgtataa ggtgggagag ggtgtgtctg ggctgcccaa cctaacaact
301 gtggcacagc ctgacgcaca aaacacagct tatagtgttc ccccacttag ccagagagaa
361 gtcggcgaag ctaaagaacc gctgcctggc tccattctgg aaatgtggga tggtgagatc
421 taccactatg ggctgtatgt tgagcggggg catgtactcg gagtacacaa accacctgct
481 gcaataagcc ttgccaaaat tgaattaaca ccgctgtctc tctactggag agtggtctac
541 actccccagt atttgatagc tccagaaact cttaagaact tgagtggaga gactttccca
601 tacacggcct ttgacaacaa ctgttatgcc ttctgttgtt gggtcttaga actcaacgac
661 tcctggctta gcaggagaat gattcaaaga acaactgggt tcttcagacc gtatcaggat
721 tggaacagaa aacccttacc aaccatggat gaaccgaaaa tcaagaaggc cgcgaatgct
781 gttctgtgcg ctctctcctc actcttcact agacccatta aggacatcat tggaaagctt
841 agaccactga acattcttaa tgtactggca acttgtgact ggacttttgc aggcatagtg
901 gaatccatga tccttcttgc tgaactcttt ggggtgttct ggaccccccc agatgtgtct
961 gcgatgattg ctcccttact cggtgactac gagatgcaag gccccgaaga cctggccgtg
1021 gaacttgtgc ccgtggtaat gggaggaata ggtttggtgt taggattcac caaggaaaag
1081 atcggcaaga tgctttcatc agctgcgacc acacttaggg cctgcaagga tctaggatct
1141 tatggattgg agatactcaa gttggtcatg aagtggttct tccccaagaa ggaggaggct
1201 aacgaactag ccatggtgag ggccattgag gatgcagtcc tggatttgga ggcaatagaa
1261 aataaccaca tgaccaccct tctcaaggat aaagacagcc tggccacata catgaggact
1321 cttgacttgg aagaagagaa agcaaggaaa ctgtcaacca aatcggcgtc acctgacatc
1381 gtgggtacaa taaactcatt attggcaagg atagcagccg ccaggtcact ggtccacaag
1441 gctaaggagg agctctcgag cagacagaga cctgttgttg taatgatatc aggtagacca
1501 ggtataggaa agacccatct agccagagag ctagccaaga aagttgcgtc aacactgtca
1561 ggcgaccaaa ggattggact gatacctaga aatggcgtcg accattggga cgcctacaag
1621 ggagaaaggg tggttctgtg ggatgattat ggtatgagca accctataca ggacgcactg
1681 aggctccaag aattggctga cacctgtcct ctgaccctga attgtgacag gattgaaaac
1741 aaaggaaaag tgttcgacag tgatgccata attataacaa ccaaccttgc aaacccagca
1801 ccactagact atgtcaactt tgaggcctgc tctagacgca tagacttctt ggtgtatgca
1861 gacgcacctg acatcgagaa ggctaagcgt gatttccctg gccaaccaga tatgtggaaa
1921 gaccattaca gaccagactt cacacacatt aaacttcagc tggcaccaca gggaggtttt
1981 gacaaaaatg gcaacacccc acatggtaaa ggtgtggtga agtctctgac gattggttct
2041 ctgatcgcca gggcttctgg cttgctccac gagagaatgg atgaattcga gctccagggc
2101 tctgacctgc caaccttcaa ttttgaccgc aacaaagtcg ccgccttcag acaattagca
2161 gctgaaaaca aatatggtct tatggacaca ctgagggtcg gcaaccaact gaaaagtgtc
2221 aagaccctgg atgaactgaa acaggccata aagaacatca gtatcaagaa gtgccagata
2281 gtgtataatg gatgcaccta taccatggaa tctgatggga ggagcaaggt tgtggttgaa
2341 aaggtacaaa acgcaacagt tcaaaccaac aatgaacttg taggggcact ccaccacctg
2401 agatctgcaa ggataagata ctatgttaaa tgtttccaag aagccattta ctctctactc
2461 caaattgctg gtgcagcctt cgtcacctca cgcatcgtga ggcgcatgaa tatctcaaac
2521 ctctggtcga aaccacccat cgaggagggt gatgagcctg aagacaaagg aggatgcccc
2581 aagcccaggg atgaagatga cctcactatt gactctagag acattaaagt ggaagggaag
2641 aagggcaaga acaagtctgg tcggggcaag aaacacacag ccttctcatc caagggcctc
2701 agtgatgaag agtacgatga gtacaagaga atcagagagg agaggaatgg caaatactca
2761 atagaggaat acctccaaga tagggacaga tactatgaag agcttgccat tgctaaggcc
2821 actgaggagg acttctgtga agaggaggag atcaaaatcc gccagagaat cttccgaccc
2881 accaggaagc agcggaaaga ggaaagggcc acgcttgggc ttgtcacagg atcggaaatc
2941 agaaagagga atccagatga ctttaaacca aaaggaaaat tgtgggctga tgacaacagg
3001 agcgtggatt acaatgagag gatagatttt gaggctcccc cgagtgtttg gtctaggata
3061 gtcaactttg gcacaggctg gggattctgg gtttctccaa gtctctttat aacttcaaca
3121 cacgtcatac caaaaggaat cactgaggcc tttggagtgc ccataaacca aatccaaatt
3181 cacaaatctg gagaattttg ccgcttgcgg tttccaaagc caatcaggcc agacgtgagt
3241 gggatgatct tggaagaggg tgcccctgaa ggcactgttg tgtctattct catcaaaagg
3301 acaacagggg agctgatgcc tcttgcagtc agaatgggga cccatgccac aatgaaaatc
3361 caaggtagaa cggtgggtgg tcagatgggt atgcttctca ctggctcaaa tgctaaaagc
3421 atggatctag gcacaacgcc aggtgactgc gggtgtccat acatatacaa aaggggcaat
3481 gacttcgtgg ccattggggt gcacactgca gcagcgcgtg gaggcaacac ggtcatatgt
3541 gccacacagg gaagtgaagg tgaagccact cttgaaggag gtgataacaa gggtacctat
3601 tgtggagccc ccattttggg acctggcaat gcaccaaaat tgagcacaaa aacaaaattc
3661 tggagatcct ctaacgcacc gcttccccca ggtacttatg aaccagcata ccttggtggg
3721 agagacccgc gcgtgaaggg aggcccatct ctgcaacaag ttatgagaga ccaacttaaa
3781 ccttttacag agcccagagg gaagccacca aacccaaatg tcctagagtc agcaaagaag
3841 actatcatca atgttctgga acaaaccatt gacccccctc aaaagtggtc atatgcccaa
3901 gcttgtgcat ccctcgacaa gacaacctcc agtggatacc cgcaccacgt ccggaagaat
3961 gactattgga gtggtgaatc cttcacaggg aaacttgcag accaggcttc aaaagcaaat
4021 ctcatgtatg aggaaggcaa gcacatgcaa ccagtttaca ccgcagcact caaagacgag
4081 ctcgtgaaaa ctgacaaaat ttatggcaag atcaagaaaa gactcctgtg gggttctgac
4141 ctctccacca tgatccgatg cgccagagca tttggtggtc tcatggatga gctcaaagca
4201 aattgtatta cactccctat cagagttggt atgaatatga atgaagacgg tcccataata
4261 tttgagaaac actccaggta caggtaccac tatgatgctg attactcccg ctgggactcc
4321 acacaacagc gggcagtgct ggaagcggca cttgaaatca tggtgagatt ttctgctgag
4381 ccacagctgg cacaaatagt ggcagaggac ctgctgtcac caagtgtggt tgatgtgggc
4441 gatttcaaaa tcgctatcaa tgaaggccta ccatctggcg tgccttgcac ctcacaatgg
4501 aattctattg cccactggtt actcaccctg tgtgcccttt ctgaagtgac aggactaggt
4561 cctgacatca tacaagccaa ctccatgtac tccttctatg gtgatgatga gattgtgagc
4621 acagacataa aattggaccc agagaaattg accgcgaaac tcaaagaata tggccttaaa
4681 cccactcggc ccgacaagac tgaggggccg ctggtgatta gtgaagacct gaatgggttg
4741 actttcctcc gccgaacagt cacccgtgat ccagcaggtt ggtttggaaa gttggaccaa
4801 aactccatcc tcaggcagtt gtactggaca agaggaccca accatgaaga ccccagtgag
4861 accatgatac cacacgcaca gagacctgtg cagctcatgg cactactagg agaatcctcc
4921 ctacatggac cctcatttta cagcaaggtt agcaaactgg tcatatctga acttaaagag
4981 ggaggaatgg atttttatgt gcccagacaa gagtcaatgt tcagatggat gaggttctca
5041 gatctaagca catgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc
5101 gtcgaatgac gccgctccat ctaatgatgg tgctgctggc ctcgtaccag agggcaacaa
5161 cgagaccctt cccctagaac cagttgcggg cgcagctata gccgcacccg tcactggcca
5221 aaacaacata attgacccct ggattagaac aaattttgta caagcaccaa atggagagtt
5281 cacagtgtca cccagaaact cccctggaga aattttatta aacctagagt tgggccctga
5341 tttgaaccct tatttggctc atctgtcaag gatgtacaat gggtatgctg gtggagtgga
5401 agttcaggtt ctcctggcag ggaacgcgtt cactgccgga aagatcctct tcgccgccgt
5461 cccgccaaat ttcccagtgg aattcttaag cccagcccag attacaatgc tcccacattt
5521 aatagtagat gtcaggactc ttgaaccaat tatgatccca ctccctgatg ttaggaatac
5581 attcttccat tataacaacc agcccaacag ccgcatgaga ttagtggcta tgctctatac
5641 cccccttaga tctaatggct caggtgatga tgtctttact gtctcttgca gggttttgac
5701 taggcctact cctgattttg agttcactta tttagtgcca ccttctgttg aatctaagac
5761 taagcctttt tccttaccta ttttaaccct ttctgagctc acaaactcga ggttcccagt
5821 ccccatcgat tcgcttttca ccgcccagaa taatgtgttg caggtgcagt gtcaaaatgg
5881 caggtgcaca cttgatggtg agttacaagg cacaacccag ttgctcccat ctggcatctg
5941 tgcattcaga ggacgggtga cagcagaaac tgaccatcgt gacaagtggc acatgcaact
6001 gcaaaacctc aatggcacaa catatgaccc aaccgatgat gtgccagccc cgctgggtac
6061 acctgacttc aagggcgtcg tgtttggggt agcaagccaa agaaatgtgg gtaatgatgc
6121 gcctggctca accagggccc atgaggcggt gatttcaacc tatagccccc aatttgtccc
6181 caaattaggt tctgtcaatt ttagaagtaa tgatgatgat ttccaattgc agccgacaaa
6241 attcacacca gtgggcatca atgacgatgg tgaccacccg ttcagacagt gggaactacc
6301 agactattca gggctgctta ccttgaatat gaaccttgcc cccccggttg ctccaaattt
6361 ccctggtgaa caattattat tcttcagatc ttttgtgcca tgctcaggag gctataacca
6421 aggcattgta gattgtctta ttccccaaga atggatccaa cacttctatc aggaatcagc
6481 gccctcccag tcagacgtag ccctaatcag gtatgttaat cccgacacgg gacgtacact
6541 gtttgaagca aaattgcaca gatctggtta cattactgtg gctcactctg gagactatcc
6601 tcttgttgtt ccggctaatg gatactttag atttgattct tgggtaaatc agttttactc
6661 actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc tggagctttc
6721 attgcaggat tggcaggcga catgctcacg tcatctgtgg gctccctggt gaacgcaggg
6781 gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca gtctgcttcc
6841 tttcagcatg atagagagat gctccaagcg caggtgaagg caaccaagca gctgcaatct
6901 gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc cactgatgca
6961 gcaaggggag ccattggtgc acccatgaca aaggtgcttg actggtctgg cactcgatac
7021 tgggcaccca attccacaaa gacaactggt tattcgggac aattcacctc ttcacctgtg
7081 cacatgccta gcccaaatgc tccacaatca aaacctgtaa agcctaggtc tctagctcct
7141 tcttcttctt ctagtagtgt ctatagtatg tctactcaat caactcattt aacatctggc
7201 tcttctagta atgcttcttc tgcctctaca aaattgacaa acttaagctc tggctcctct
7261 caaaacagaa cagcagagtg ggtgaaccaa cagagaagtc ttagcccttt catgagtggc
7321 gcactcaata tctcacatgt cacgccaccc tcaagtaggg cttccagttc tgggacggtc
7381 tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaatac acacagacag
7441 ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttag
//