Typing tool
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Typing tool
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Complete norovirus genomes
| MT228630 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..5094
ORF2: 5075..6697
ORF3: 6697..7503
LOCUS MT228630 7503 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 175_GII.P4_GII.4_Palmas nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION MT228630
VERSION MT228630.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7503)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7503)
AUTHORS Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (20-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr
Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao
Paulo 01246902, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7503
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="175_GII.P4_GII.4_Palmas"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="10-Sep-2010"
/note="genotype: GII.P4_GII.4"
gene <1..5094
/gene="ORF1"
CDS <1..5094
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QIO15991.1"
/translation="MASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQ
PPPREKPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPEES
NTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLA
RVELAPLSLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGKIR
PLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAK
RIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTMPE
LKQALKNVSIKKCQIVYSGCTYILESDGKGNVKVDRIQSAAVQTNNELAGALHHLRCA
RIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVENTEETTSKDGCPK
PKDDEEFVISSDDIKAEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
VTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPG
SAPTLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRG
KPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
ESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDST
QQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREY
GLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH
GDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..984
/gene="ORF1"
/product="p48"
mat_peptide 985..2082
/gene="ORF1"
/product="NTPase"
mat_peptide 2083..2619
/gene="ORF1"
/product="p22"
mat_peptide 2620..3018
/gene="ORF1"
/product="VPg"
mat_peptide 3019..3561
/gene="ORF1"
/product="Pro"
mat_peptide 3562..5091
/gene="ORF1"
/product="RdRp"
gene 5075..6697
/gene="ORF2"
CDS 5075..6697
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QIO15992.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6697..7503
/gene="ORF3"
CDS 6697..7503
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QIO15993.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSSLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPARGSSSTSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga caccgcaaaa
61 tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc cctcggggcg
121 cggcctaaac agcctccccc gagggaaaaa ccacaaagac ccccacgacc acctactcca
181 gaactggtta aaaatattcc ccctccccca cccaacggag aggatgaaat agtggtttct
241 tatagtgtca aggatggtgt ttccggcttg cctgaccttt ccaccgtcag gcaaccggaa
301 gaatctaaca cggccttcag tgtcccccca ctcaatcaga gggagaatag agatgctaag
361 gaaccactta ctggaacaat tctggaaatg tgggacgggg aaatctacca ttatggcctg
421 tatgtggagc gaggtcttgt actgggtgtg cacaaaccac cagctgccat cagcctcgct
481 agggttgagc tagcaccact ctccttgtac tggagacctg tgtacactcc tcagtacctc
541 atctctccag acactctcaa gaaattatcc ggagaaacgt tcccctacac agcctttgac
601 aacaactgtt atgccttttg ttgctgggtc ctggacctaa atgactcgtg gctgagcagg
661 agaatgatcc agagaacaac tggtttcttc aggccctacc aagactggaa taggaaaccc
721 cttcccacta tggatgactc caaaataaag aaggtagcta acatattcct gtgtgctctg
781 tcctcgctgt tcaccagacc cataaaagat ataataggga agataaggcc tcttaacatc
841 ctcaacatct tagcctcatg tgattggact tttgcaggta tagtggagtc cctgatactc
901 ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat gattgccccc
961 ttacttggtg actacgagct acaaggacct gaggaccttg cagttgagct cgtccccgtg
1021 gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg gaaaatgttg
1081 tcatctgctg cgtccacctt gagagcttgt aaagaccttg gtgcatatgg gctagagatc
1141 ctaaagttgg tcatgaagtg gttcttcccg aagaaggaag aggcaaatga gctggctata
1201 gtgaggtcta tcgaggatgc agtcctggat ctcgaggcaa ttgaaaacaa ccatatgacc
1261 accttgctca aagacaaaga cagtctggca acctatatga gaacacttga ccttgaggag
1321 gagaaagcca ggaaactctc aaccaagtct gcctcacccg acatcgtggg cacaatcaac
1381 gccctcctgg cgagaatcgc tgccgcacgt tctctggtgc accgagcgaa ggaggagctt
1441 tccagcagac caagacctgt ggtgttgatg atatcaggca ggccaggaat agggaagacc
1501 cacctcgcta gggaagtggc taagagaatc gcagcctccc ttacaggaga ccagcgtgtg
1561 ggcctcatcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga gagggtcgtc
1621 ctatgggacg attatggaat gagcaaccct attcacgatg ccctcaggct gcaagaactc
1681 gctgacactt gccccctcac tctaaactgt gacaggatcg aaaacaaagg aaaggtcttt
1741 gacagcgatg tcatcattat caccactaat ctggccaacc cagcgccact ggactatgtc
1801 aactttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc ccctgaagtc
1861 gaaaaggcga agcgtgactt cccaggccag cctgacatgt ggaagaacgc tttcagttct
1921 gatttctcac acataaaact agcactggcc ccacagggtg gtttcgacaa gaacgggaac
1981 accccacacg gaaagggcgt tatgaagact ctcaccactg gctcccttat tgcccgggca
2041 tcagggctac tccatgagag gttagatgaa tttgaactgc agggcccagc tctcaccacc
2101 ttcaatttcg atcgcaataa ggtgcttgcc tttagacagc ttgctgctga aaataaatat
2161 ggattgatgg acacaatgag agttgggaaa cagctcaagg atgtcagaac catgccagaa
2221 ctcaaacaag cactcaagaa tgtctcaatc aagaagtgcc aaatagtgta tagtggttgc
2281 acctacatac ttgagtctga tggcaagggc aatgtgaaag ttgacagaat ccaaagcgcc
2341 gccgtgcaga ccaacaatga gctggctggt gccctgcacc atttgaggtg cgccagaatc
2401 agatactatg tcaagtgtgt ccaggaggcc ctgtattcca tcattcaaat cgctggggct
2461 gcatttgtca ctacgcgcat tgccaagcgc atgaacatac aagacctatg gtccaagcca
2521 caagtggaaa acacagagga gactaccagc aaggacgggt gcccaaaacc taaggacgat
2581 gaggagtttg tcatttcatc cgacgacatc aaagctgagg gtaagaaagg gaagaacaag
2641 actggccgcg gcaagaagca cacagcattt tcaagcaaag gcctcagtga tgaagagtac
2701 gatgagtaca agaggattag agaagaaagg aatggcaagt actccataga agagtacctt
2761 caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgactga ggaagacttc
2821 tgtgaagagg aggaggccaa gatccggcaa aggatcttta ggccaacaag gaaacaacgc
2881 aaggaggaaa gagcctctct tggtctggtc acaggctctg aaattaggaa aagaaaccca
2941 gatgacttca aacccaaagg gaaattgtgg gctgacgatg acaggagtgt agactacaat
3001 gagaaactca gttttgaggc cccaccaagc atctggtcga gaatagtcaa ctttggttca
3061 ggctggggat tttgggtctc ccccagtctg ttcataacat caacccatgt cataccccag
3121 ggcgcaaagg agttctttgg agtccccatc aaacaaatac aggtacacaa gtcgggcgag
3181 ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggcat gatcttagaa
3241 gaaggcgcac ctgagggcac cgtggtcaca ctactcatca aaaggtccac tggggaactc
3301 atgcccctag cagctaggat ggggacccat gcgaccatga agatccaagg gcgcactgtt
3361 ggaggccaga tgggcatgct tctgacagga tccaacgcca agagcatgga cctgggtact
3421 acaccaggtg attgtggctg cccctatatc tacaagagag gtaatgacta tgtggtcatt
3481 ggggtccaca cggctgccgc acgtgggggg aacactgtca tatgtgccac ccaggggagt
3541 gaaggagagg ctacacttga aggtggtgac aacaagggga catactgtgg tgcaccaatc
3601 ctaggcccag ggagtgcccc aacactcagc accaagacca aattctggag atcgtccaca
3661 gcgtcactcc cacctggcac ctatgaacca gcctatcttg gtggcaagga ccctagggtc
3721 aagggtggcc cttcactgca gcaagtcatg agggaacagt tgaagccatt cacagagccc
3781 aggggcaagc caccaaaacc aagtgtatta gaagctgcca agaagaccat catcaatgtc
3841 cttgagcaaa caattgatcc acctgagaaa tggtcgttcg cacaagcttg cgcgtccctt
3901 gacaagacca cttccagtgg tcatccgcac cacatgcgga aaaacgactg ctggaacggg
3961 gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat gtttgaagaa
4021 gggaagaaca tgaccccagt ctacacagct gcgctcaagg atgagttagt taaaactgac
4081 aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggacttggc gaccatgatc
4141 cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcacactg tgtcacactt
4201 cctattagag ttggcatgaa tatgaatgag gatggcccca tcatcttcga gaggcattcc
4261 aggtacacat atcactatga tgctgattac tctcgatggg attcaacaca acagagagcc
4321 gtgttggcag cagctctaga aatcatggtt aaattctccc cagaaccaca cttggctcag
4381 gtagttgcgg aggaccttct ttctcctagc gtggtggacg tgggcgactt cacaatatca
4441 atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc catcgcccac
4501 tggcttctca ctctctgtgc gctctctgaa gtcacaaacc tgtcccctga taccatacag
4561 gctaactccc tcttctcttt ttatggtgat gatgaaattg ttagcacaga cataaaattg
4621 gacccagaaa aattgacagc aaagctcaga gaatatgggt taaaaccaac ccgccctgac
4681 aaaactgaag gaccccttgt catctctgaa gacctgaatg gcctaacttt cctgcggaga
4741 actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagttc aatactcagg
4801 caaatgtact ggactagggg tcccaaccat ggagacccat ctgaaacaat gattccacac
4861 tcccaaagac ccatacaatt gatgtcccta ctgggggagg ccgctctcca cggcccagca
4921 ttttacagca aaatcagcaa attggtcatt gcagagctaa aagaaggtgg catggatttt
4981 tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg
5041 gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa
5101 cccatctgat gggtccacag ccaaccttgt cccagaggtc aacaatgagg ttatggcttt
5161 ggagcccgta gttggtgccg ccattgcggc acctgtagcg ggccaacaaa atgtaattga
5221 cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagtttacag tatcccctag
5281 aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatttga atccctacct
5341 ttcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaatcct
5401 cgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac caaatttccc
5461 aactgaaggt ttgagcccca gccaggtcac tatgttcccc cacataatag tagatgttag
5521 gcaattggaa cctgtgttaa ttcccttacc cgatgttagg aataatttct accattataa
5581 tcaatcaaat gaccccacca tcaaattgat agcaatgttg tacacaccac ttagggctaa
5641 taatgccggg gacgatgtct tcacagtttc ctgtcgagtt ctcacgagac catcccccga
5701 ttttgatttc atatttttgg tgccacccac agttgaatca agaactaaac cattctctgt
5761 cccagtttta actgttgagg agatgaccaa ttcaaggttc cccattcctt tggaaaaatt
5821 gttcacgggc cccagtagtg cctttgttgt tcaaccacaa aacggcaggt gcacgactga
5881 tggcgtgctc ctaggtacta cccaactgtc tcccgtcaac atctgcacct tcagagggga
5941 tgtcacccat attccaggca gtcgtaacta cacaatgaat ttggcctccc aaaattggaa
6001 cagttacgat ccaacagaag aaatcccagc ccctctagga actccagatt tcgtggggaa
6061 gattcaaggt gtgctcaccc aaaccacaag gacagatggc tcgacccgcg gccacaaagc
6121 cacagtgtac actgggagcg ccgacttttc tccaaaactg ggtagagttc aatttgccac
6181 tgacacagac aatgattttg aaactaacca aaacacaaag ttcaccccag tcggtgttat
6241 ccaggatggt ggtaccaccc accgaaatga accccaacaa tgggtgctcc caagttactc
6301 aggcagaaac attcataatg tacacctggc ccccgctgtg gcccccactt tcccgggcga
6361 gcagctcctc ttcttcagat ctactatgcc cggatgcagc gggtacccca acatggactt
6421 ggactgtctg ctcccccagg aatgggtgca gtatttctac caggaggcag ccccagcaca
6481 atctgatgtg gctctgctaa gatttgtgaa tccggacaca ggtagggttt tgtttgagtg
6541 taagcttcat aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat
6601 cccccccaat ggttatttta gatttgattc ctgggtcaac cagttctaca cacttgcccc
6661 catgggaaat gggacggggc gtagacgtgc attataatgg ctggagcttt ctttgctgga
6721 ttggcatctg acgtccttgg ctctggactt ggttccctaa tcaatgctgg ggctggggcc
6781 atcaaccaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc cttccaattt
6841 agtagcagtc tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt
6901 gaggccacca aaaagttgca acaggaaatg atgagagtta aacaagcaat gctcctagag
6961 ggtggattct ctgagacaga tgcagcccgt ggggcaatca acgcccccat gacaaaaact
7021 ttggactgga gcgggacaag gtactgggct cccgatgcta ggactacaac atataatgca
7081 ggccgctttt ccacccccca accctcgggg gcactaccag gaagagctaa tcttagggct
7141 actgtccccg cccggggttc ctccagcacg tcctctaact cttctattgc tacttctgtg
7201 tattcaaatc aaaccacctc aacgagactt ggttctacag ctggttctgg taccagtgtc
7261 tcgagcctcc cgtcaactgc aaggactagg agctgggttg aggatcaaaa taggaatttg
7321 tcacctttca tgaggggggc ccataacatc tcgtttgtca ccccaccatc tagcagatcc
7381 tctagccaag gcacagtctc gaccgtgccc aaagaagttt tggactcctg gactggcgct
7441 ttcaacacgc gcaggcagcc tctcttcgct cacattcgca agcgagggga gtcacgggcg
7501 taa
//