Typing tool
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Typing tool
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Complete norovirus genomes
| MT227832 | GII.6 | |
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| GII.P7 |
ORF1: 1..5094
ORF2: 5075..6727
ORF3: 6727..7464
LOCUS MT227832 7464 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 086_GII.P7_GII.6_Araguaina nonstructural
polyprotein (ORF1) and VP1 (ORF2) genes, complete cds; and VP2
(ORF3) gene, partial cds.
ACCESSION MT227832
VERSION MT227832.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7464)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7464)
AUTHORS Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (20-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr
Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao
Paulo 01246902, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7464
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="086_GII.P7_GII.6_Araguaina"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="09-Apr-2013"
/note="genotype: GII.P7_GII.6"
gene 1..5094
/gene="ORF1"
CDS 1..5094
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QIO04282.1"
/translation="MKMASNDATTAFGSQNSVNDSINTTPSNKEEAGAFSNIKVGFKK
MLGAVPKGTKAPSSDQHCPTVKIGPKTLTVPPEPPNGEDTVQFDAKSETVIGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFRTTRDNSTAKSSLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKNIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESP
EIEKVKRDFPGQPDMWKDYFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERKDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKVALRDVKFNECDIIYKNSKYRVSSNGKGSVSVDKVEDHPSQTANEVGSAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTEAQEASEPEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVPVLTEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVDKGPSLQQVMRDQLKPFTEPRG
KPPSPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCISLPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 1..1002
/gene="ORF1"
/product="p48"
mat_peptide 1003..2100
/gene="ORF1"
/product="NTPase"
mat_peptide 2101..2619
/gene="ORF1"
/product="p22"
mat_peptide 2620..3018
/gene="ORF1"
/product="VPg"
mat_peptide 3019..3561
/gene="ORF1"
/product="Pro"
mat_peptide 3562..5091
/gene="ORF1"
/product="RdRp"
gene 5075..6727
/gene="ORF2"
CDS 5075..6727
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QIO04283.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAADSTDSPQRARNHPFHVQLKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESTDF
TTNQPIRFTPVGMGDDNWRQWELPDYSGRLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLS
MAGALRPCIPDPHGGNYRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 6727..>7464
/gene="ORF3"
CDS 6727..>7464
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QIO04284.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSVPSCAIPVHRSPAPLQHTAPPKSKLQSDSASVYSSPSTVSSQS
TYSTVLTAGTGSSRSTPTSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSK
ASSNGTVSTVARAVLDSWNAKFNTHRQP"
ORIGIN
1 atgaagatgg cgtctaacga cgctaccact gcctttggca gtcaaaactc tgtcaatgac
61 agtatcaaca ccaccccttc aaacaaagaa gaggctggtg cattctccaa catcaaagtt
121 ggatttaaga aaatgctggg tgccgtacct aagggcacta aagcacccag cagtgaccag
181 cactgtccaa cagttaagat cgggcccaaa acactaacag tcccccctga acccccaaac
241 ggtgaagaca ctgtacaatt tgatgcaaaa tcggaaactg taattgggct accggacttg
301 acaacagtgc aaaatgaaca tgaaaatacc ccatacactg tccctccact gagtgagagg
361 gaacacagac cagccactga gccacttcct ggcacaatac tagagatgtg ggatggtgaa
421 ttctaccact actccgtgta cgtcagcggc ggcaaagctc tgggggttca caaacctccg
481 gcagctataa gtctcgcgac gatagagctc acccccatat ctctatactg gaggcctgtt
541 tacaccccca actacctggt ctgcccagac acactgaaag gtctcgctgg tgaaaagttc
601 ccttacacgg ccttcagcaa caattgctac aacttctgct gctgggtgct cgaactcaat
661 gacacgtggc ttagcagaag aagcatttcc agaaccaccg gcttcttcaa accgtaccaa
721 tcttggaaca ggaaacctct cccaaccgtt gacgatggaa agatcaaaaa ggtggccaac
781 gcgatccttt gtgcactcgg ttcgctgttc tcaaaaccaa tcaaggacct gctaggcaag
841 ctcaaaccat tgaacttact acatctgctc gcgtcgtgtg attggacgtt tgcaggtata
901 gtggagacag tcatcttaat ggcagaacta ttcaatgtct ttcggaccac acgagacaac
961 tctaccgcca agtcctccct gataggtgat tttgaattgc aggggcctga ggacttggcg
1021 gtagagcttg ttcctgtggt catgggtggt ataggaatgg ttctcggctt cacagctgag
1081 aagataggtc gcatgctgtc atccgctgca tcaacactgc gggcgtgtaa ggacttaggg
1141 aactatgccc ttgacatact taaattggtc atgaaatggt ttttcccaaa gaaagaggag
1201 aaggccgaga tggaaacctt gagggcgatt gaggacgccg tcctagatat ggaggccata
1261 ggtaacaacc acctcacgac cctcctcaag gataaagaca gtctcacggc cttcatgaag
1321 accttggatt tggaagaaga gaaagcaagg aaactatcca ccaaatcatc ctcgccggac
1381 atcgtcggca ctatcaatgc catactggct aggatagctg ccgctagatc cctcctgcac
1441 aaagctaaag aagagatgtt cagcaggatc agaccagtgg ttgttatgat ctcaggcaga
1501 cctggcattg gcaaaaccca tatggcgaga catttggcta agaacatcgc caacaccatg
1561 agtggtgacc aaagagtcgg gctcgttccg cgcaacgggg ttgaccactg ggacgcatac
1621 aggggagaga gggtggtctt gtgggatgat tacggaatgg ggaaccctgt caaagatgct
1681 ttaacactgc aagagctagc tgatacatgc ccagtcactc taaactgtga caggattgag
1741 aacaagggaa aaatgttcga cagtgatgtc atcataatta cgaccaacct agtcaaccct
1801 gcacctctcg attatgtgaa cttcgaggcg tgctctagaa gaattgattt cttggtttat
1861 gcagagtcac cagaaattga gaaggttaag agagatttcc ctggccaacc tgacatgtgg
1921 aaagactatt tcaaacaaga cttttcccat ataaagctaa ccctagcccc ccaaggcgga
1981 tttgacaaga atggtaacac cccgcatggt aagggcacca tgcgatccct cacccagggg
2041 tccctgaccg caagggttgc aggccttgtt catgagagga aggatgagtt ccagctacaa
2101 gggaatgacc tccagacata caactttgac accaacaggg tctctgcgtt caggaaactg
2161 gctgcagaca acaagtatgg gatcatggaa acaatgagag tgggtgcagc gctcaaaaat
2221 gtcaaaactt tggaagatct gaaagtcgcc ttgagagatg tgaagttcaa cgagtgtgac
2281 ataatttaca agaactctaa gtaccgggtc tcttccaacg gcaagggctc tgtttctgtt
2341 gataaagttg aggaccaccc gtctcagacc gcaaatgaag tgggctcagc actcctcaga
2401 cttaggcaag caagggctag atattatgtc agctgcttcc aagacctcgt ctacactctc
2461 atacaagttg ctggggcgtc attcgttgtc aacaggatct ccaaaaggtt ctgttgggaa
2521 aggtgggtta aaccgaccga agcccaagaa gcgagtgagc ccgaaaagga agtagctcaa
2581 ggtagatggg agatagagcc caaggacaca gaaccagaag gcaagaaggg taagaacaag
2641 aaagggagag gcaagaaaca cacagccttc tctagcaaag gcctaagtga tgaagagtat
2701 gatgagttca agaggatcag agaagagagg aacggaaaat actccattga ggaatacctg
2761 caagaccggg accgctacta tgaagaagtg gcagtcccgg tcttgacaga agaggacttt
2821 tgtgaagaag aagaagccaa gataagacaa agaatcttcc gcccaacaag gaagcaaaga
2881 aaggaggaaa ggggggtgct tggcttagtc actggctcag atatcaggaa gaggaggcca
2941 gacgattttc agccaaaagg caacctgtgg gcagatgaca ctaggagtgt ggactacaat
3001 gagagacttg actttgaggc tccaccaagc gtctggtcaa gaatagttcc attgggcact
3061 ggttggggct tctgggtctc atcaaacctc ctgatcacaa caacacacgt cctgcccaag
3121 ggggtcaagg aactctttgg ggtcgaagtc aaacaaattc agatccacaa gtctggagag
3181 ttttgcaggt ttaggttccc aagaccaatc aggccagatg tcacagggct cgtgttggag
3241 gaaggtgctc ctgagggcac tgtctgctct atactcgtta agaggcctac aggtgagatg
3301 atccccctag cagtgaggat gggcacgcac gcatccatga aaatacaggg taggaccgtc
3361 ggtggtcaga tgggaatgct tctcacaggg gcaaatgcaa agaacatgga ccttggcacc
3421 ggtcctggtg actgcggttg tccttacatc tacaagcgtg gcaacgacat agttgtcgcg
3481 ggtgtccaca ccgcagcagc ccgggggggc aacactgtca tttgtgccac tcaaggacaa
3541 gacggagagg cagtccttga gggaaatgaa aaccttggca cctactgtgg tgctccaatt
3601 ctgggccctg gcaaagcgcc taaactcagt acgaaaacca aattttggcg ctcatcacca
3661 gatgccctac ctcctggcac gtatgaacct gcttatctgg ggggtaagga tcccagagtg
3721 gacaaggggc cctccctaca gcaagttatg agagaccagc tgaaaccatt cacagagccc
3781 aggggcaaac cacctagccc agcagtttta gaagaggcta aaaagacagt gatgaatgtc
3841 ctagaacaga ccattgaccc tgctaaacca tggacttact cacaagcgtg tgcttcactg
3901 gacaagacca cctctagtgg aagcccccac catgtcagga aaaatgacca ctggaatggg
3961 gagtctttta ctggtcccct cgcagaccaa gcatccaaag ccaacctcat gtatgaacag
4021 gcaaaacatg tgcagcccgt gtacacggcc gcgctcaaag atgagcttgt taagactgat
4081 aagatctaca agaaaataaa gaagagactt ctgtgggggt cagaccttgg tacgatgatc
4141 aggtgtgcca gggcttttgg cggccttatg gacagtatga aagcaagctg tatatccctc
4201 ccatgcaggg tggggatgaa catgaatgag gatggcccta tcatatttga caaacactcc
4261 aagtataggt accactatga tgctgactac tctaggtggg actcaaccca gcaaaggagc
4321 attctttccg ccgccatgga ggtgatggtg aggttctctg ctgaaccaga attggcacaa
4381 gtggtcgcag aggacctttt ggcgcctagc cagctggatg ttggtgattt tgtcatctca
4441 gtccaggagg gcctgccttc aggagtccca tgcacgtcac aatggaattc aatagcgcac
4501 tggattctaa ctctgagcgc aatggcagaa gtgtcaggtc tttcaccaga cgttgtccaa
4561 gctcactcct gtttttcatt ttatggcgac gatgagatcg tcagcactga catcaacctt
4621 gaccccatga aattgacaca gaaactcaga gagtatggtc tggtccccac ccggcctgat
4681 aagactgaag gccccctcgt tataactgaa gacctaaccg gcctgacatt cctgcgtaga
4741 tcgattgcac gggatccagc tggatggttt gggaaattgg atcaagactc aatcctcagg
4801 caattatact ggacaagggg gcccaaccat gaaaacccat acgagagcat ggttccccac
4861 tcccagcgag ctactcagct catggccctt cttggtgagg cttcgttgca tggtccccag
4921 ttttacaaga aagtcagcaa gatggtcatc aatgagatta agagtggtgg tctggagttt
4981 tatgtgccca gacaagaggc catgtttagg tggatgagat tctctgacct cagcacatgg
5041 gagggcgatc gcaatcttgc tcccgagggt gtgaatgaag atggcgtcga atgacgccgc
5101 tccatcaaat gatggtgctg ccaacctcgt accagaggcc aacaatgagg ttatggcact
5161 tgaaccggtg gtgggagctt caatcgcagc tcctgttgtc ggtcagcaga atataattga
5221 cccctggatt agagaaaatt ttgttcaagc accacagggc gagtttactg tttcaccaag
5281 gaactcgccc ggtgagatgc ttctaaatct tgaattgggc ccagaactta acccctattt
5341 gagtcatttg tcccgcatgt acaatgggta tgctggtggc atgcaggttc aggtggtcct
5401 agctgggaat gcgttcacag ctgggaagat catctttgcc gctgtgccac cacacttccc
5461 tgtggataat atcagtgcag cccagataac tatgtgtccc catgtgattg ttgatgtgag
5521 acagctagaa ccagtgcttc tacccctccc cgatataagg aataggttct tccattacaa
5581 ccaggaaaac acccctcgga tgagactcgt ggccatgctc tacacgccgc taagggctaa
5641 ttccggagag gatgtgttca ctgtgtcctg tagggttctg acccgtcctg ccccagattt
5701 tgaattcaca tttttagttc caccaactgt tgaatcaaaa acaaaaccct ttactctacc
5761 tattctaacc cttggtgagt tgtctaattc ccgttttcct gctgctatag atatgcttta
5821 cactgatccc aatgaatcaa tagttgttca gccccaaaat ggtagatgta cccttgacgg
5881 cacgttgcaa ggcacaacac aattggtccc aacacagatt tgtgccttta gaggcaccct
5941 gatcagccag actgcaagag cggccgattc aacagattcc ccccagcgag cccgtaatca
6001 ccctttccac gttcagctca agaacctgga tggcacacag tatgacccaa cagatgacat
6061 ccctgcagtc ctgggggcta ttgacttcaa gggtacagta ttcggagtgg caagccagag
6121 ggacgtctct ggaacacaag aacagggcca ctatgccacc cgggctcatg aagcacacat
6181 tgacacaact gacccaaagt acgcacctaa attaggcaca attctcatca aatctgaatc
6241 taccgatttc accacaaatc agcccattag gttcactcca gtgggtatgg gtgacgacaa
6301 ttggagacag tgggaattgc ctgactactc tggtagattg actctaaata tgaaccttgc
6361 ccctgctgtt tccccatcct tccctggtga acgaatcctt ttctttagat ctatagtacc
6421 atcagctgga ggctacgggt ctggctatat agactgcctc ataccccagg aatgggtgca
6481 acatttctac caggaggcag caccttcaca atctgctgtt gcactggtta ggtatgttaa
6541 ccccgacact gggcgtaaca tctttgaggc caagttgcac agagaagggt tcctcagcat
6601 ggctggagct ctacgcccct gtataccaga tccccatggg ggcaattata gatttgaggc
6661 ttgggttaat caattctata cacttgcccc catgggatct ggacaggggc gtagaagagc
6721 tcagtaatgg ctggagcctt cttcgcaggg ttagcaggtg atgtcgtgtc gaacggcatc
6781 ggttccctca tcaatgcagg tgctaatgca gtcaatcaaa aggttgagta tgattttaat
6841 aagcaacttc agatggcatc atttaaacat gataaggaga tgttacaatc acaggtgttg
6901 gcaaccaaac aactgcagca ggaaatgatg aacataaagc aggggatgtt gaccgctggc
6961 ggcttttccc ctgcggacgc tgctagaggg gctgttaacg ctccaatgac aaaaatactg
7021 gactggaatg gcacaagata ttgggcacct aatagcatga aaaccacaag ctattcggtg
7081 ccatcttgtg ccattccagt ccacaggtct cctgctcccc ttcaacacac cgccccacca
7141 aaaagtaagt tgcaaagtga ttctgctagt gtgtatagct ccccttccac cgtttcttca
7201 caatcaactt attcaacagt gttgactgca ggaactgggt cgtccagatc cacccccacg
7261 tccacagcaa cctccaccct gtccaggacc agtgactggg ttagaggaca gaatgaaagg
7321 cttagcccgt ttatggatgg tgctctccaa actacttttg tcacaccacc atcgagcaaa
7381 gcttcatcaa atgggacagt ctcgaccgtg gcgagggctg ttttggactc ctggaacgct
7441 aagttcaata cgcataggca gcct
//