Typing tool
|
Complete norovirus genomes
MT227824 | GII.6 | ||
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GII.P7 |
ORF1: 1..5094 ORF2: 5075..6727 ORF3: 6727..7464LOCUS MT227824 7464 bp RNA linear VRL 29-JUN-2021 DEFINITION Norovirus GII isolate 011_GII.P7_GII.6_Araguaina nonstructural polyprotein (ORF1) and VP1 (ORF2) genes, complete cds; and VP2 (ORF3) gene, partial cds. ACCESSION MT227824 VERSION MT227824.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7464) AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R., Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M., Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A. TITLE Norovirus strains in patients with acute gastroenteritis in rural and low-income urban areas in northern Brazil JOURNAL Arch Virol 166 (3), 905-913 (2021) PUBMED 33462673 REFERENCE 2 (bases 1 to 7464) AUTHORS Luchs,A. TITLE Direct Submission JOURNAL Submitted (20-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao Paulo 01246902, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 9 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7464 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="011_GII.P7_GII.6_Araguaina" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Brazil" /collection_date="20-Sep-2014" /note="genotype: GII.P7_GII.6" gene 1..5094 /gene="ORF1" CDS 1..5094 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QIO04115.1" /translation="MKMASNDATTAFGSQNSVNDSINTTPSNKEEAGAFSNIKVGFKK MLGAVPKGTKAPSSDQHCPTVKIGPKTLTVPPEPPNGEDTVQFDAKSETVIGLPDLTT VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFRTTRDNSTAKSSLIGDFELQ GPEDLAVELVPVVMGGIGMVLGFTAENLARMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM ARHLAKNIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESP EIEKVKRDFPGQPDMWKDYFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL TARVAGLVHERKDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN VKTLEDLKVALRDVKFNECDIIYKNSKYRVSSNGKGSVSVDKVEDHPSQTANEVGSAL LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTEAQEASEPEK EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY SIEEYLQDRDRYYEEVAVPVLTEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL LITTTHVLPKGVKELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVDKGPSLQQVMRDQLKPFTEPRG KPPSPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT MIRCARAFGGLMDSMKASCISLPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM FRWMRFSDLSTWEGDRNLAPEGVNEDGVE" mat_peptide 1..1002 /gene="ORF1" /product="p48" mat_peptide 1003..2100 /gene="ORF1" /product="NTPase" mat_peptide 2101..2619 /gene="ORF1" /product="p22" mat_peptide 2620..3018 /gene="ORF1" /product="VPg" mat_peptide 3019..3561 /gene="ORF1" /product="Pro" mat_peptide 3562..5091 /gene="ORF1" /product="RdRp" gene 5075..6727 /gene="ORF2" CDS 5075..6727 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QIO04116.1" /translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ LVPTQICAFRGTLISQTARAADSTDSPQRARDHPLHVQVKNLDGTQYDPTDDIPAVLG AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESTDF TTNQPIRFTPVGMGDDNWRQWELPDYSGRLTLNMNLAPAVSPSFPGERILFFRSIVPS AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLS MAGALRPCIPDPHGGNYRFEAWVNQFYTLAPMGSGQGRRRAQ" gene 6727..>7464 /gene="ORF3" CDS 6727..>7464 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QIO04117.1" /translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG TRYWAPNSMKTTSYSGPSCSTPVHRSPAPLQHTAPPKSKLQSDSASVYSSPSTVSSQS TYSTVLSAGTGSSRSTATSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSK ASSNGTVSTVARAVLDSWNAKFNTHRQP" ORIGIN 1 atgaagatgg cgtctaacga cgctaccact gcctttggca gtcaaaactc tgtcaatgac 61 agtatcaaca ccaccccttc aaacaaagaa gaggctggtg cattctccaa catcaaagtt 121 ggatttaaga aaatgctggg tgccgtacct aagggcacta aagcacccag cagtgaccag 181 cactgtccaa cagttaagat cgggcccaaa acactaacag tcccccctga acccccaaac 241 ggtgaagaca ctgtacaatt tgatgcaaaa tcggaaactg taattgggct accggacttg 301 acaacagtgc aaaatgaaca tgaaaatacc ccatacactg tccctccact gagtgagagg 361 gaacacagac cagccactga gccacttcct ggcacaatac tagagatgtg ggatggtgaa 421 ttctaccact actccgtgta cgtcagcggc ggcaaagctc tgggggttca caaacctccg 481 gcagctataa gtctcgcgac gatagagctc acccccatat ctctatactg gaggcctgtt 541 tacaccccca actacctggt ctgcccagac acactgaaag gtctcgctgg tgaaaagttc 601 ccttacacgg ccttcagcaa caattgctac aacttctgct gctgggtgct cgaactcaat 661 gacacgtggc ttagcagaag aagcatttcc agaaccaccg gcttcttcaa accgtaccaa 721 tcttggaaca ggaaacctct cccaaccgtt gacgatggaa agatcaaaaa ggtggccaac 781 gcgatccttt gtgcactcgg ttcgctgttc tcaaaaccaa tcaaggacct gctaggcaag 841 ctcaaaccat tgaacttact acatctgctc gcgtcgtgtg attggacgtt tgcaggtata 901 gtggagacag tcatcttaat ggcagaacta ttcaatgtct ttcggaccac acgagacaac 961 tctaccgcca agtcctccct gataggtgat tttgaattgc aggggcctga ggacttggcg 1021 gtagagcttg ttcctgtggt catgggtggt ataggaatgg ttctcggctt cacagctgag 1081 aaccttgctc gcatgctgtc atccgctgca tcaacactgc gggcgtgtaa ggacttaggg 1141 aactatgccc ttgacatact taaattggtc atgaaatggt ttttcccaaa gaaagaggag 1201 aaggccgaga tggaaacctt gagggcgatt gaggacgccg tcctagatat ggaggccata 1261 ggtaacaacc acctcacgac cctcctcaag gataaagaca gtctcacggc cttcatgaag 1321 accttggatt tggaagaaga gaaagcaagg aaactatcca ccaaatcatc ctcgccggac 1381 atcgtcggca ctatcaatgc catactggct aggatagctg ccgctagatc cctcctgcac 1441 aaagctaaag aagagatgtt cagcaggatc agaccagtgg ttgttatgat ctcaggcaga 1501 cctggcattg gcaaaaccca tatggcgaga catttggcta agaacatcgc caacaccatg 1561 agtggtgacc aaagagtcgg gctcgttccg cgcaacgggg ttgaccactg ggacgcatac 1621 aggggagaga gggtggtctt gtgggatgat tacggaatgg ggaaccctgt caaagatgct 1681 ttaacactgc aagagctagc tgatacatgc ccagtcactc taaactgtga caggattgag 1741 aacaagggaa aaatgttcga cagtgatgtc atcataatta cgaccaacct agtcaaccct 1801 gcacctctcg attatgtgaa cttcgaggcg tgctctagaa gaattgattt cttggtttat 1861 gcagagtcac cagaaattga gaaggttaag agagatttcc ctggccaacc tgacatgtgg 1921 aaagactatt tcaaacaaga cttttcccat ataaagctaa ccctagcccc ccaaggcgga 1981 tttgacaaga atggtaacac cccgcatggt aagggcacca tgcgatccct cacccagggg 2041 tccctgaccg caagggttgc aggccttgtt catgagagga aggatgagtt ccagctacaa 2101 gggaatgacc tccagacata caactttgac accaacaggg tctctgcgtt caggaaactg 2161 gctgcagaca acaagtatgg gatcatggaa acaatgagag tgggtgcagc gctcaaaaat 2221 gtcaaaactt tggaagatct gaaagtcgcc ttgagagatg tgaagttcaa cgagtgtgac 2281 ataatttaca agaactctaa gtaccgggtc tcttccaacg gcaagggctc tgtttctgtt 2341 gataaagttg aggaccaccc gtctcagacc gcaaatgaag tgggctcagc actcctcaga 2401 cttaggcaag caagggctag atattatgtc agctgcttcc aagacctcgt ctacactctc 2461 atacaagttg ctggggcgtc attcgttgtc aacaggatct ccaaaaggtt ctgttgggaa 2521 aggtgggtta aaccgaccga agcccaagaa gcgagtgagc ccgaaaagga agtagctcaa 2581 ggtagatggg agatagagcc caaggacaca gaaccagaag gcaagaaggg taagaacaag 2641 aaagggagag gcaagaaaca cacagccttc tctagcaaag gcctaagtga tgaagagtat 2701 gatgagttca agaggatcag agaagagagg aacggaaaat actccattga ggaatacctg 2761 caagaccggg accgctacta tgaagaagtg gcagtccccg tcttgacaga agaggacttt 2821 tgtgaagaag aagaagccaa gataagacaa agaatcttcc gcccaacaag gaagcaaaga 2881 aaggaggaaa ggggggtgct tggcttagtc actggctcag atatcaggaa gaggaggcca 2941 gacgattttc agccaaaagg caacctgtgg gcagatgaca ctaggagtgt ggactacaat 3001 gagagacttg actttgaggc tccaccaagc gtctggtcaa gaatagttcc attgggcact 3061 ggttggggct tctgggtctc atcaaacctc ctgatcacaa caacacacgt cctgcccaag 3121 ggggtcaagg aactctttgg ggtcgaagtc aaacaaattc agatccacaa gtctggagag 3181 ttttgcaggt ttaggttccc aagaccaatc aggccagatg tcacagggct cgtgttggag 3241 gaaggtgctc ctgagggcac tgtctgctct atactcgtta agaggcctac aggtgagatg 3301 atccccctag cagtgaggat gggcacgcac gcatccatga aaatacaggg taggaccgtc 3361 ggtggtcaga tgggaatgct tctcacaggg gcaaatgcaa agaacatgga ccttggcacc 3421 ggtcctggtg actgcggttg tccttacatc tacaagcgtg gcaacgacat agttgtcgcg 3481 ggtgtccaca ccgcagcagc ccgggggggc aacactgtca tttgtgccac tcaaggacaa 3541 gacggagagg cagtccttga gggaaatgaa aaccttggca cctactgtgg tgctccaatt 3601 ctgggccctg gcaaagcgcc taaactcagt acgaaaacca aattttggcg ctcatcacca 3661 gatgccctac ctcctggcac gtatgaacct gcttatctgg ggggtaagga tcccagagtg 3721 gacaaggggc cctccctaca gcaagttatg agagaccagc tgaaaccatt cacagagccc 3781 aggggcaaac cacctagccc agcagtttta gaagaggcta aaaagacagt gatgaatgtc 3841 ctagaacaga ccattgaccc tgctaaacca tggacttact cacaagcgtg tgcttcactg 3901 gacaagacca cctctagtgg aagcccccac catgtcagga aaaatgacca ctggaatggg 3961 gagtctttta ctggtcccct cgcagaccaa gcatccaaag ccaacctcat gtatgaacag 4021 gcaaaacatg tgcagcccgt gtacacggcc gcgctcaaag atgagcttgt taagactgat 4081 aagatctaca agaaaataaa gaagagactt ctgtgggggt cagaccttgg tacgatgatc 4141 aggtgtgcca gggcttttgg cggccttatg gacagtatga aagcaagctg tatatccctc 4201 ccatgcaggg tggggatgaa catgaatgag gatggcccta tcatatttga caaacactcc 4261 aagtataggt accactatga tgctgactac tctaggtggg actcaaccca gcaaaggagc 4321 attctttccg ccgccatgga ggtgatggtg aggttctctg ctgaaccaga attggcacaa 4381 gtggtcgcag aggacctttt ggcgcctagc cagctggatg ttggtgattt tgtcatctca 4441 gtccaggagg gcctgccttc aggagtccca tgcacgtcac aatggaattc aatagcgcac 4501 tggattctaa ctctgagcgc aatggcagaa gtgtcaggtc tttcaccaga cgttgtccaa 4561 gctcactcct gtttttcatt ttatggcgac gatgagatcg tcagcactga catcaacctt 4621 gaccccatga aattgacaca gaaactcaga gagtatggtc tggtccccac ccggcctgat 4681 aagactgaag gccccctcgt tataactgaa gacctaaccg gcctgacatt cctgcgtaga 4741 tcgattgcac gggatccagc tggatggttt gggaaattgg atcaagactc aatcctcagg 4801 caattatact ggacaagggg gcccaaccat gaaaacccat acgagagcat ggttccccac 4861 tcccagcgag ctactcagct catggccctt cttggtgagg cttcgttgca tggtccccag 4921 ttttacaaga aagtcagcaa gatggtcatc aatgagatta agagtggtgg tctggagttt 4981 tatgtgccca gacaagaggc catgtttagg tggatgagat tctctgacct cagcacatgg 5041 gagggcgatc gcaatcttgc tcccgagggt gtgaatgaag atggcgtcga atgacgccgc 5101 tccatcaaat gatggtgctg ccaacctcgt accagaggcc aacaatgagg ttatggcact 5161 tgaaccggtg gtgggagctt caatcgcagc tcctgttgtc ggtcagcaga atataattga 5221 cccctggatt agagaaaatt ttgttcaagc accacagggc gagtttactg tttcaccaag 5281 gaactcgccc ggtgagatgc ttctaaatct tgaattgggc ccagaactta acccctattt 5341 gagtcatttg tcccgcatgt acaatgggta tgctggtggc atgcaggttc aggtggtcct 5401 agctgggaat gcgttcacag ctgggaagat catctttgcc gctgtgccac cacacttccc 5461 tgtggataat atcagtgcag cccagataac tatgtgtccc catgtgattg ttgatgtgag 5521 acagctagaa ccagtgcttc tacccctccc cgatataagg aataggttct tccattacaa 5581 ccaggaaaac acccctcgga tgagactcgt ggccatgctc tacacgccgc taagggctaa 5641 ttccggagag gatgtgttca ctgtgtcctg tagggttctg actcgtcccg ctccagattt 5701 tgaattcaca tttttagttc caccaactgt tgaatcaaaa acaaaaccct ttactctacc 5761 tattctaacc cttggtgagt tgtctaattc ccgttttcct gctgctatag atatgcttta 5821 cactgatccc aatgaatcaa tagttgttca gccccaaaat ggtagatgta cccttgacgg 5881 cacgttgcaa ggcacaacac aattggtccc aacacagatt tgtgccttta gaggcaccct 5941 gatcagccag actgcaagag cggccgattc aacagattcc ccccagagag cccgtgatca 6001 cccgttgcac gtccaggtca agaacctgga tggcacacag tatgacccaa cagatgacat 6061 ccctgcagtc ctgggggcta ttgacttcaa gggtacagta ttcggagtgg caagccagag 6121 ggacgtctct ggaacacaag aacagggcca ctatgccacc cgggctcatg aagcacacat 6181 tgacacaact gacccaaagt acgcacctaa attaggcaca attctcatca aatctgaatc 6241 taccgatttc accacaaatc agcccattag gttcactcca gtgggtatgg gtgacgacaa 6301 ttggagacag tgggaattgc ctgactactc tggtagattg actctaaata tgaaccttgc 6361 ccctgctgtt tccccatcct tccctggtga acgaatcctt ttctttagat ctatagtacc 6421 atcagctgga ggctacgggt ctggctatat agactgcctc ataccccagg aatgggtgca 6481 acatttctac caggaggcag caccttcaca atctgctgtt gcactggtta ggtatgttaa 6541 ccccgacact gggcgtaaca tctttgaggc caagttgcac agagaagggt tcctcagcat 6601 ggctggagct ctacgcccct gtataccaga tccccatggg ggcaattata gatttgaggc 6661 ttgggttaat caattctata cacttgcccc catgggatct ggacaggggc gtagaagagc 6721 tcagtaatgg ctggagcctt cttcgcaggg ttagcaggtg atgtcgtgtc gaacggcatc 6781 ggttccctca tcaatgcagg tgctaatgca gtcaatcaaa aggttgagta tgattttaat 6841 aagcaacttc agatggcatc atttaaacat gataaggaga tgttacaatc acaggtgttg 6901 gcaaccaaac aactgcagca ggaaatgatg aacataaagc aggggatgtt gaccgctggc 6961 ggcttttccc ctgcggacgc tgctagaggg gctgttaacg ctccaatgac aaaaatactg 7021 gactggaatg gcacaagata ttgggcacct aatagcatga aaaccacaag ctattcaggg 7081 ccatcttgta gcacccctgt ccacaggtct cctgctcccc ttcaacacac cgccccacca 7141 aaaagtaagt tgcaaagtga ttctgctagt gtgtatagct ccccttccac cgtttcttca 7201 caatcaactt attcaacagt gttgtctgca ggaactgggt cgtccagatc caccgccacg 7261 tccacagcaa cctccaccct gtccaggacc agtgactggg ttagaggaca gaatgaaagg 7321 cttagcccgt ttatggatgg tgctctccaa actacttttg tcacaccacc atcgagcaaa 7381 gcttcatcaa atgggacagt ctcgaccgtg gcgagggctg ttttggactc ctggaacgct 7441 aagttcaata cgcataggca gcct //