Typing tool
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Typing tool
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Complete norovirus genomes
| MT227816 | GII.6 | |
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| GII.P7 |
ORF1: 1..5094
ORF2: 5075..6727
ORF3: 6727..7505
LOCUS MT227816 7505 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 072_GII.P7_GII.6_Araguaina nonstructural
polyprotein (ORF1) and VP1 (ORF2) genes, complete cds; and VP2
(ORF3) gene, partial cds.
ACCESSION MT227816
VERSION MT227816.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7505)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7505)
AUTHORS Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (20-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr
Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao
Paulo 01246902, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7505
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="072_GII.P7_GII.6_Araguaina"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="26-Aug-2013"
/note="genotype: GII.P7_GII.6"
gene 1..5094
/gene="ORF1"
CDS 1..5094
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QIO03889.1"
/translation="MKMASNDATTAFGSQNSVNDSINTTPSNKEEAGAFSNIKVGFKK
MLGAVPKGTKAPSSDQHCPTVKVGPKTLTVPPEPPNGEDTVQFDAKSETVIGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKNIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESP
EIEKVKRDFPGQPDMWKDCFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERKDEFQLQGDDLQTYNFDTNRVSAFRKLAADNRYGIMETMRVGAALKN
VKTLEDLKVALRDVKFKECEIIYKNSKYRVSSNGKGSVSVDKVEDHTSQTANEVGSAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEASEPEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVPVLTEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGLKELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCVALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKRVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 1..1002
/gene="ORF1"
/product="p48"
mat_peptide 1003..2100
/gene="ORF1"
/product="NTPase"
mat_peptide 2101..2619
/gene="ORF1"
/product="p22"
mat_peptide 2620..3018
/gene="ORF1"
/product="VPg"
mat_peptide 3019..3561
/gene="ORF1"
/product="Pro"
mat_peptide 3562..5091
/gene="ORF1"
/product="RdRp"
gene 5075..6727
/gene="ORF2"
CDS 5075..6727
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QIO03890.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAADSTDSPQRARDHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTVLIKSESTDF
TTNQPIRFTPVGMGDNNWRQWELPDYSGRLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGFGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
MSGAGNNSIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 6727..>7505
/gene="ORF3"
CDS 6727..>7505
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QIO03891.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGPSCSTPVHRSPAPLQHTAPPKGKLQSDSASVYSSPSTVSSQS
THSTVLSAGTGSSRSTPTSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 atgaagatgg cgtctaacga cgctaccact gcctttggca gtcaaaactc tgtcaatgac
61 agtatcaaca ccaccccttc aaacaaagaa gaggctggtg cattctccaa catcaaagtt
121 ggatttaaga aaatgctggg tgccgtacct aagggcacta aagcacccag cagtgaccag
181 cactgcccaa cagttaaggt cgggcccaaa acactaacag tcccccctga acccccaaat
241 ggtgaagaca ctgtgcagtt tgatgcaaaa tcggaaactg taattgggct accggacttg
301 acaacagtgc aaaatgaaca tgaaaatacc ccatacactg tccctccact gagtgagagg
361 gaacacagac cagccactga gccacttcct ggcacaatac tggagatgtg ggatggtgaa
421 ttctaccact actccgtgta cgttagcggc ggcaaagctc tgggggttca caaacctccg
481 gcagctataa gccttgcaac aatagagctc acccccatat ctctatactg gaggcctgtt
541 tacaccccca actacctggt ctgcccagac acactgaaag gtctcgctgg tgaaaagttc
601 ccctacacgg ccttcagcaa caattgctac aacttctgct gctgggtgct tgaactcaat
661 gacacgtggc ttagcagaag aagcatttcc agaaccaccg gcttcttcaa accgtaccag
721 tcttggaaca ggaaacctct cccaaccgtt gatgatggga agatcaaaaa ggtggccaac
781 gcgatccttt gtgcactcgg ttcgctgttc tcaaaaccaa tcaaggacct gctaggcaag
841 ctcaaaccat tgaacttact acatctgctc gcgtcgtgtg attggacgtt tgcaggtata
901 gtggagacag tcatcttaat ggcagaacta ttcaatgtct tttggactcc gccagacgtc
961 tctaatttta tagcctccct gataggtgat tttgaattgc aggggcctga ggacttggcg
1021 gtagagcttg ttcctgtggt catgggtggt ataggaatgg ttctcggctt cacagctgag
1081 aagataggtc gcatgctgtc gtccgctgca tcaacactgc gggcgtgtaa agacttaggg
1141 aactatgccc ttgacatact taaattggtc atgaaatggt tcttcccaaa gaaagaggag
1201 aaagccgaga tggaaacctt gagggcgatt gaggatgccg tcctagatat ggaggccata
1261 ggtaacaacc acctcacgac cctcctcaag gataaagaca gtctcacggc cttcatgaag
1321 accttggatc tggaagaaga gaaagcaagg aagctgtcca ccaaatcatc ctcgccggac
1381 atcgtcggca ctatcaatgc catactggct aggatagctg ccgctagatc cctcctgcac
1441 aaagccaagg aagagatgtt cagcaggatc agaccagtgg ttgttatgat ctcaggcaga
1501 cctggcattg gcaaaaccca tatggcgaga catttggcta agaacatcgc caacaccatg
1561 agtggtgacc aaagagtcgg gctcgttccg cgcaatgggg ttgaccactg ggacgcttac
1621 aggggagaga gggtggtctt gtgggacgat tatggaatgg ggaaccctgt caaggatgct
1681 ttaacactgc aagagctagc tgacacatgc ccagtcactc taaactgtga caggatcgag
1741 aacaagggaa aaatgttcga cagtgatgtc atcataatca cgaccaacct agtcaaccct
1801 gcacctctcg attatgtgaa cttcgaggcg tgctctagaa gaattgattt cttggtctat
1861 gcagagtcac cagaaattga gaaggttaaa agagacttcc ctggccaacc tgacatgtgg
1921 aaagattgtt tcaaacaaga cttttcccat ataaagctaa ccctagcccc ccaaggtgga
1981 tttgacaaga atggtaacac cccgcatggt aagggcacca tgcgatccct cacccagggg
2041 tccctgaccg caagggttgc aggccttgtt catgagagga aggatgagtt ccagctacaa
2101 ggggatgacc tccagacata caactttgac accaacaggg tctctgcgtt caggaaactg
2161 gccgcagaca acaggtatgg gatcatggaa acaatgagag tgggtgcagc gctcaaaaat
2221 gtcaaaactt tggaagatct gaaagtcgcc ttgagagatg taaagttcaa agagtgtgaa
2281 ataatttaca agaactctaa gtaccgggtc tcttccaacg gcaagggctc tgtttctgtt
2341 gacaaagttg aggaccacac gtctcagacc gcaaatgaag tgggctcagc actcctcaga
2401 cttaggcaag caagggctag atattatgtc agctgcttcc aagacctcgt ctacactctc
2461 atacaggttg ctggggcgtc attcgttgtc aacaggatct ccaaaaggtt ctgttgggaa
2521 aggtgggtta aacctaccga aacccaagaa gcgagtgagc ccgaaaagga agtggctcaa
2581 ggtagatggg agatagagcc caaagacaca gaaccggagg gcaagaaggg caaaaacaag
2641 aaagggagag gcaagaaaca cacagccttc tccagcaaag gcctaagtga tgaagagtat
2701 gatgagttca agagaatcag agaagagagg aacggaaaat actccattga ggaatacctg
2761 caagaccggg accgctacta tgaagaagtg gcagtcccgg tcttgacaga agaggacttt
2821 tgtgaagaag aagaagccaa gataagacaa agaatcttcc gcccaacaag gaagcaaaga
2881 aaggaggaaa ggggggtact tggcttagtc actggctcag acatcaggaa gaggagacca
2941 gatgattttc agccaaaagg caacctatgg gcagatgaca ctaggagtgt ggactacaat
3001 gagagacttg actttgaggc tccaccaagc gtctggtcaa gaatagtccc attgggcact
3061 ggttggggct tttgggtctc atcaaacctc ctgatcacaa caacacacgt cctgcccaag
3121 gggctcaagg aactctttgg ggtcgaaatc aaacaaattc aaatccacaa gtctggagag
3181 ttctgcaggt ttaggttccc aagaccaatc aggccagatg tcacaggact cgtgttggag
3241 gaaggtgctc ctgagggtac tgtctgttct atactcgtta agaggcctac aggtgagatg
3301 atccccttag cagtgaggat gggcacacat gcatccatga aaatacaggg taggaccgtc
3361 ggtggtcaga tgggaatgct tctcacaggg gcaaatgcaa agaacatgga tcttggcacc
3421 ggtcctggtg actgcggttg tccttacatc tacaagcgtg gcaacgacat agttgtcgcg
3481 ggtgtccaca ccgcagcagc ccgggggggc aacactgtta tttgtgccac tcaaggacaa
3541 gacggagagg cagtcctcga gggaaatgaa aaccttggca cctactgtgg tgctccaatt
3601 ctgggccctg gcaaagcgcc caaactcagc acaaaaacca aattttggcg atcatcacca
3661 gatgccctac ctcctggcac atatgaacct gcttatctgg ggggcaagga tcccagagtt
3721 gaaaaggggc cctccctaca gcaagttatg agagaccagc tgaaaccatt cactgagccc
3781 aggggcaaac cacctagacc agcagtttta gaagaggcta aaaagacagt gatgaatgtt
3841 ctagaacaga ccattgaccc tgctaaacca tggacttact cacaagcatg tgcttcactg
3901 gacaagacca cttctagtgg aagcccccac catgtcagga aaaatgacca ctggaatggg
3961 gagtctttta ctggtcccct agcagaccaa gcatccaaag ccaacctcat gtatgaacag
4021 gcaaaacatg tgcagcccgt gtacacggcc gcgctcaaag atgagcttgt taagactgat
4081 aagatctaca agaaaataaa gaagagactt ctgtgggggt cagaccttgg tacgatgatc
4141 aggtgtgcta gggcttttgg cggtcttatg gacagtatga aagcgagttg tgtagccctt
4201 ccatgcagag tagggatgaa catgaatgag gatggcccca tcatatttga caagcactcc
4261 aagtataggt accactatga tgctgactac tctaggtggg actcgaccca gcaaaggagc
4321 attctttccg ccgccatgga ggtgatggtg aggttctctg ctgaaccaga attggcacaa
4381 gtggtcgcag aggacctttt ggcgcctagc cagctagatg ttggcgattt tgtcatctca
4441 gtccaggagg gcctgccatc aggagtccca tgtacgtcac aatggaattc aatagcgcac
4501 tggattctaa ctctgagcgc aatggcagaa gtgtcaggtc tctcaccaga cgttgtccag
4561 gcccactcct gtttttcatt ttatggcgac gatgagatcg tcagcactga catcaacctt
4621 gaccccatga aattgacaca gaaactcagg gagtatggtc tggtccccac ccggcctgat
4681 aagactgaag gccccctcgt tataactgaa gacctaaccg gcctgacttt cctgcgtaga
4741 tcgattgcac gggatccagc tggatggttt ggaaaattgg atcaagactc aatcctcaga
4801 caattgtact ggacaagggg gcccaatcat gaaaacccat acgagagcat ggttccccac
4861 tcccagcgag ctactcagct catggccctt cttggtgagg cttcattgca tggtccccag
4921 ttttacaaga gagtcagcaa gatggttatc aatgagatta agagtggtgg tctggagttt
4981 tatgtgccca gacaagaggc catgtttagg tggatgagat tctctgacct cagcacatgg
5041 gagggcgatc gcaatcttgc tcccgagggt gtgaatgaag atggcgtcga atgacgccgc
5101 tccatcaaat gatggtgctg ccaacctcgt accagaggcc aacaatgagg ttatggcact
5161 tgaaccggtg gtgggagctt caatcgcagc tcctgttgtc ggtcaacaga atataattga
5221 cccctggatt agagaaaatt ttgttcaagc gccacagggc gagtttactg tttcaccaag
5281 gaactcgccc ggtgaaatgc ttctaaatct tgaattgggc ccagaactta acccctattt
5341 gagtcatttg tcccgcatgt acaatgggta tgctggtggc atgcaggttc aggtggtcct
5401 agctgggaat gcgttcacag ctgggaagat catctttgcc gctgtgccac cgcacttccc
5461 tgtggataat attagtgcag cccagataac tatgtgcccc catgtgattg ttgatgtgag
5521 acagcttgaa ccagtgcttc tacccctccc cgatataagg aatagattct tccattacaa
5581 ccaagaaaac accccccgga tgagactcgt ggccatgctc tacacgcctc taagggctaa
5641 ttccggagag gatgtgttca ctgtgtcctg tagggttctg actcgccccg ctccagattt
5701 tgaatttaca tttttagttc caccaactgt tgaatcaaaa acaaaaccct ttactctacc
5761 tattctaacc cttggtgagt tgtctaattc ccgttttcct gctgctatag atatgcttta
5821 cactgatcct aatgaatcaa tagttgttca gccccaaaat ggtagatgca ctcttgatgg
5881 cacgttgcaa ggcacaacac aattggtccc aacacagatc tgtgccttta gaggtaccct
5941 gatcagccag actgcgagag cggccgactc aacagattcc ccccagagag cccgtgatca
6001 cccgttgcac gtccaggtca agaacctaga tggcacgcag tatgacccaa cagatgacat
6061 ccctgcagtc cttggggcca ttgacttcaa aggtacagtg ttcggagtgg caagtcagag
6121 ggacgtctct ggaacacaag aacagggcca ttatgccacc cgggctcacg aagcacacat
6181 tgatacaact gacccaaagt atgcacctaa attaggcaca gttctcatca aatctgaatc
6241 tactgatttc accacaaatc agcccattag gttcactcca gtgggtatgg gtgataacaa
6301 ttggagacag tgggaattgc ctgactactc tggtagattg actctgaata tgaatcttgc
6361 ccctgctgtt tccccatcct tccctggcga acgaatcctt ttctttaggt ctatagtacc
6421 atcagctggg ggcttcgggt ctggctatat agactgtctc ataccccagg aatgggtgca
6481 acacttctac caggaggcag caccttcaca gtctgctgtt gcactggtta ggtacgtcaa
6541 ccccgacact gggcgtaaca tctttgaggc caagttacac agagaagggt tcctcaccat
6601 gtctggagct ggaaacaact ctattgtggt tccccctaat ggttatttta gatttgaagc
6661 ttgggttaac caattctaca cacttgcccc catgggatct ggacaggggc gtaggagagc
6721 tcagtaatgg ctggagcctt cttcgcaggg ttagcaggcg atgtcgtgtc gaacggcatc
6781 ggttccctca tcaatgcagg tgctaatgca gtcaatcaaa aggttgagta tgattttaat
6841 aagcaacttc agatggcatc atttaaacat gataaggaga tgttgcaatc acaggtgttg
6901 gcaaccaaac aactgcagca ggaaatgatg aacataaagc aggggatgtt gaccgctggc
6961 ggcttttccc ctgcggacgc tgctagaggg gctgttaacg ctccaatgac aaaaatactg
7021 gattggaatg gcacaagata ttgggcacct aatagcatga aaaccacaag ctattcaggg
7081 ccatcttgta gcacccctgt acataggtct cctgctcccc tccagcacac tgccccacca
7141 aaaggtaagt tgcaaagtga ttctgctagt gtgtatagct ccccttccac tgtttcttca
7201 caatcaactc attcaacagt gttgtctgca ggaactgggt cgtccaggtc cacccccacg
7261 tccacagcaa cctccaccct gtctaggacc agcgactggg ttagaggaca gaatgaaagg
7321 cttagcccgt ttatggatgg tgctctccaa actacttttg tcacaccacc atcgagcaaa
7381 gcttcatcaa atgggacagt ctcgaccgtg cccaaagctg ttttggactc ctggactcct
7441 atgttcaata cgcataggca gcctctcttc gcccatttgc gtaggcgagg ggagtcacaa
7501 attta
//