Typing tool
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Typing tool
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Complete norovirus genomes
| MT221255 | GII.6 | |
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| GII.P7 |
ORF1: 1..5092
ORF2: 5073..6716
ORF3: 6716..7492
LOCUS MT221255 7492 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 085_GII.P7_GII.6_Araguaina nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION MT221255
VERSION MT221255.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7492)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7492)
AUTHORS Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr
Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao
Paulo 01246902, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7492
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="085_GII.P7_GII.6_Araguaina"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="05-Jun-2015"
/note="genotype: GII.P7_GII.6"
gene <1..5092
/gene="ORF1"
CDS <1..5092
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="QIM61823.1"
/translation="KMASNDATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKKM
LGAVPKGTKAPSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTTV
QNEHENTPYTVPPLSEREHKPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPA
AISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLEL
NDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDL
LGKLKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQG
PEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKW
FFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARK
LSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMA
RHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELA
DTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPE
IEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLT
ARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKSV
KTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALL
RLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRYCWERWVKPTETQEMIASEKE
VALLTFWFEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYS
IEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGS
DIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLL
ITTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVC
SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGC
PYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGK
APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGK
PPRPVVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGE
SFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM
IRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQ
QRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQW
NSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYG
LVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHE
NPYESMVPHSQRATQLMALLSEASLHGPQFYKKVSKMVINEIKGGGLEFYVPRQEAMF
RWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..1000
/gene="ORF1"
/product="p48"
mat_peptide 1001..2098
/gene="ORF1"
/product="NTPase"
mat_peptide 2099..2617
/gene="ORF1"
/product="p22"
mat_peptide 2618..3016
/gene="ORF1"
/product="VPg"
mat_peptide 3017..3559
/gene="ORF1"
/product="Pro"
mat_peptide 3560..5089
/gene="ORF1"
/product="RdRp"
gene 5073..6716
/gene="ORF2"
CDS 5073..6716
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QIM61824.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYSQGNTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVHVQHGRCTLDGTLQGTTQ
LVPIQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG
QPTRFTPIGMGADDWNEWELPEHYGHFTLNMNLAPAVAPAFPGERILSFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAASSEAAVTLIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 6716..7492
/gene="ORF3"
CDS 6716..7492
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QIM61825.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHMRRRGESQI"
ORIGIN
1 gaagatggcg tctaacgacg ctaccactgc ctttggcagc caaaactctg tcaatgacag
61 tatcaacacc gccccttcta acaaagaaga ggttggtgca ttctccaaca tcaaagttgg
121 ttttaagaag atgctgggtg ccgtccccaa ggggaccaaa gcacccagta gtgatcagca
181 ctgcccctca gttaagatcg ggaccaagac attaacagtt ccccctgagc ccccaaatgg
241 tgaagacacc gtgcagtttg atgcgaagtc ggaaactgtg cgcgggttac cagacttgac
301 aacggtgcag aatgaacacg aaaacacacc atacactgtc cccccattga gtgaaaggga
361 gcacaaacca gctactgaac cgcttcctgg cacaatactg gagatgtggg atggtgaatt
421 ctaccattac tctgtgtacg tcagcggtgg caaagcccta ggggttcaca agccccctgc
481 agcgataagc ctcgcgacga tagagctcac acccatatct ctttattgga ggcccgttta
541 cacccccaac tatctggtct gcccagacac gttgaagggc cttgctggtg agaagttccc
601 ctacacggcc ttcagcaaca actgttacaa cttctgttgc tgggtgcttg agctcaatga
661 cacatggctt agtaggagaa gcatctctag aaccaccggc ttcttcaaac cataccaatc
721 ttggaatagg aaaccccttc caaccgttga tgatggaaag atcaaaaagg tggccaacgc
781 aattctctgt gcacttgggt cactgttctc aaaaccaatc aaggacctat tgggcaagct
841 taaaccattg aacttgctgc acttgctcgc atcatgtgac tggacgtttg cgggtatagt
901 agagacagtc atcctaatgg cggaactttt cggcattttt tggacaccgc cagatgtttc
961 cagtttcata gcctccctga taggtgattt tgaattgcaa gggcctgagg acctggctgt
1021 ggagcttgta cccgtggtca tgggtggcat aggaatggtt ctcggcttta ctgctgagaa
1081 gataggccgc atgctatcgt ccgctgcatc aacactacgg gcgtgcaaag acttggggaa
1141 ttatgctctt gacatattaa aactagttat gaagtggttc ttcccaaaga aagaagagaa
1201 agccgagatg gagacactaa gggcgattga ggatgccgtc ctggacatgg aagctatagg
1261 aaataaccat ctcacaaccc tcctcaagga caaggatagc ctcacggctt tcatgaagac
1321 tctagaccta gaagaagaga aggcaaggaa gctgtccacc aaatcatcct cgccagacat
1381 tgtcggcacc attaatgcca tactagctag aatagctgct gccaggtccc tcttgcacaa
1441 ggctaaagaa gaaatgttta gcaggatcag acccgtggtt gtcatgatct cgggtagacc
1501 tggcattggc aaaacccaca tggcaagaca cttggctaag agtatcgcca acaccatgag
1561 cggcgaccag agagtggggc tcgtcccacg caacggggtt gatcattggg acgcctacag
1621 gggagagagg gtggttttat gggatgatta tggcatggga aaccctgtca aagacgccct
1681 aacactgcaa gagctggccg acacctgccc agtaactcta aattgtgata ggattgagaa
1741 caaggggaag atgtttgaca gtgatgtcat cataatcacg accaatttag tcaacccagc
1801 gcccctcgat tatgtaaact tcgaggcatg ctccagaagg gtcgactttt tggtctatgc
1861 agagtcacca gaaattgaga aggttaagag agactttccc ggccaacctg acatgtggaa
1921 ggaccatttt aagccagatt tttcccacat aaaactgact ctagccccac agggtggatt
1981 tgacaagaat ggcaacaccc cgcatggtaa gggcaccatg cgatccctaa cccagggatc
2041 cctgactgca agggttgcag gtcttgttca cgagagaaga gacgagtttc agctccaagg
2101 gaacgacctt caaacatata actttgatac caacagagtc tctgcattta ggaagctggc
2161 cgcagacaac aagtatggga tcatggagac tatgagagtg ggcacagcgc ttaagagtgt
2221 caagaccttg gaagatctga aagttgcact gagggatgtg aagttcaatg agtgtgagat
2281 aatttacaga aactccaaat accgagtctc ttccaatggt aaaggttctg tctctgttga
2341 caaagttgag gaccaaacat cccagactgc aaacgaagtg ggtgcagcac tccttagact
2401 cagacaggca agagccagat actatgtcag ctgcttccaa gacctcgttt acactctaat
2461 acaagtcgcc ggagcatcat tcgttgtcaa caggatctcg aaaaggtact gctgggagag
2521 atgggtcaaa ccaaccgaaa cccaggaaat gattgcatcc gaaaaggaag ttgcccttct
2581 taccttctgg tttgagccca aggacacaga accagaaggt aagaagggta agaacaagaa
2641 aggaagaggc aagaaacaca cagctttctc cagtaaaggc ctgagtgatg aggagtatga
2701 cgagttcaag agaatcagag aagaaaggaa cggaaaatac tccattgagg aatacctgca
2761 agaccgggat cgctactatg aggaagtggc ggttgcccgg gcgacagagg aggacttctg
2821 tgaagaggag gaggccaaga taagacaaag aatctttcgc cccacaaaga aacagaggaa
2881 ggaagaaagg ggggtgcttg gtttggttac tggctcagac atcaggaaga gaagaccaga
2941 cgattttcaa ccgaagggca acctgtgggc agacgacacc aggagtgtgg actacaacga
3001 gagacttgat ttcgaggctc ccccgagtgt ctggtcaaga atagtcccat tgggcactgg
3061 ctggggcttc tgggtctcat caaacctcct gatcacaaca acgcacgtcc tacctaaggg
3121 gattaatgaa ctcttcggag ttgagatcaa acagattcag attcataagt ctggagagtt
3181 ctgcaggttc aggttcccaa gaccaattag accagatgtc acagggctcg tgttggagga
3241 aggcgctcca gaaggcactg tctgctctat actcgtaaag agacctacag gtgagatgat
3301 ccccctggca gtgaggatgg gcacgcatgc atccatgaaa atacagggta ggaccgtcgg
3361 tggtcagatg ggaatgctcc tcacaggggc aaatgcgaag aacatggatc ttggcaccgg
3421 tcctggtgac tgcggttgcc cttacatcta caaacgtggc aatgatatag ttgtcgcggg
3481 tgtccacacc gcagcagccc ggggaggcaa cactgtcata tgtgccactc aagggcaaga
3541 tggggaagca gtccttgagg gaaatgagaa ccttggcact tactgcggtg ctccaatctt
3601 gggtccaggc aaggcgccca aacttagcac gaagaccaag ttctggcgtt catcaccaga
3661 cgctttgccg ccaggcactt atgagcctgc ctacttggga ggtaaggacc ctagagtgga
3721 aaaaggacca tccctgcagc aagtcatgag ggaccagcta aaacctttca cagaacccag
3781 gggtaagcca cctagacctg tagtcttaga agaagccaaa aagacagtga tgaatgttct
3841 agagcaaacc attgaccctg ctaaaccgtg gacctattcc caagcatgcg cctcactgga
3901 caagaccact tccagtggta gcccccatca tgtcaggaaa aatgaccatt ggaatgggga
3961 atccttcact ggccccctcg cagaccaagc atccaaagcc aacctcatgt acgagcaggc
4021 caaacatgtg cagcccgtgt acacggccgc acttaaagat gaactagtca aaactgacaa
4081 gatctacaag aagataaaga aaaggctctt atgggggtcg gatcttggta caatgatcag
4141 gtgtgccagg gcctttggcg gtctcatgga tagcatgaag gcaagctgca tagccctccc
4201 atgtagggta ggaatgaaca tgaatgaaga tggccccatc atatttgaca agcattctaa
4261 gtacaggtac cattatgatg ctgactattc caggtgggac tcaacccagc aaaggagcat
4321 tctctcggcc gccatggaag tgatggtgcg gttctctgct gaaccagagc tggcacaagt
4381 ggttgcagag gacctcctgg cacccagcca actagatgtt ggcgatttcg tcatctcagt
4441 ccaggagggt ctgccatcag gggtcccatg cacatcacaa tggaattcaa tagcacactg
4501 gatcctaacc ttgagtgcaa tggcagaagt atcgggtctc tcaccagatg ttgttcaagc
4561 ccactcctgt ttctcattct acggtgatga tgagatcgtc agcactgaca tcaaccttga
4621 tcccatgaag ttgacacaga agctcagaga gtatggcctg gtccccaccc gacctgacaa
4681 aactgagggt cccctcgtga taactgaaga tctcaccggc ctaacgttcc tgcgtaggtc
4741 aattgcacgg gacccagctg ggtggtttgg aaaattggac caagactcaa tcctcagaca
4801 gttgtattgg acaaggggcc ccaaccatga gaacccatat gagagcatgg tccctcattc
4861 ccagcgggcc acacaactca tggcccttct cagtgaggcc tcactgcatg gtccccagtt
4921 ctacaagaaa gttagcaaga tggttattaa tgagatcaaa ggtggtggtc tggaattcta
4981 cgtgcccaga caagaggcca tgttcagatg gatgagattc tctgacctca gcacatggga
5041 gggcgatcgc aatcttgctc ccgagggtgt gaatgaagat ggcgtcgaat gacgctgctc
5101 catcgaatga tggtgctgcc aacctcgtac cagaggccac caatgaggtt atggcacttg
5161 agccggtggt gggagcctca attgctgctc ccgtcgtcgg tcaacaaaat ataattgacc
5221 cctggattag agaaaatttt gttcaggcac cacagggtga gtttactgtt tcaccaagga
5281 actcacctgg tgagatgctt ctaaatcttg aattaggccc tgagctcaac ccttatctga
5341 gtcacttgtc ccgcatgtat aacggctatg ctggtggtat gcaggttcag gtggtcctag
5401 ctgggaatgc gttcacagct ggtaaaatca tctttgccgc cgtcccacca catttccctg
5461 ttgagaacat tagtgcggcc caaatcacaa tgtgccccca tgtaattgtt gatgtaagac
5521 agcttgagcc agtgcttttg cccctccctg acataaggaa tagattcttt cattatagtc
5581 agggaaatac cccccggatg agacttgtgg ctatgttgta tacacccctt agagcaaatt
5641 ctggtgagga tgtgtttacg gtgtcttgca gagtcctgac ccgccctgcc cccgactttg
5701 agttcacgtt tttggtgcca ccaactgtgg agtcaaagac taagcccttt acactcccta
5761 ttctgactct tggagagctg tccaactcca gattccccgc tccgatagac atgttgtaca
5821 ctgaccccaa tgaggcaatt gtggtgcatg tacaacatgg caggtgcact ctagatggaa
5881 cacttcaagg gaccacccaa ctggtaccca tccaaatttg ctccttcagg ggcacgctaa
5941 ttagccagac gtcgaggtct gcagattcaa cagattcagc cccacgggtg aggaaccacc
6001 ctctccacgt tcagctgaag aacctcgatg ggacaccata tgacccaaca gatgaggtgc
6061 cagcagtttt gggtgccata gatttcaaag gaactgtgtt tggggtcgct agccaaagga
6121 acaccacagg gaactctata ggagcaaccc gcgcccatga agtgcacata gataccacaa
6181 accctagata caccccaaag cttggctctg tgttgatgta ttctgaatct actgattttg
6241 atgatggaca acccacccgc ttcaccccca ttggcatggg agccgatgat tggaacgagt
6301 gggaattgcc tgaacattat ggtcacttca ctcttaacat gaatttggcc cccgcagtcg
6361 ccccagcttt ccctggtgag cgtattctct ccttcaggtc agtggtgcca tctgctggtg
6421 gctatggatc aggtcacata gattgcctca taccacaaga atgggttcag catttctacc
6481 aggaggccgc ttcatcagag gccgcggtca ctcttatcag atatgtcaac cctgacactg
6541 gaagaaacat ctttgaggca aaattgcata gagaagggtt catcactgtg gcaaattctg
6601 gaaacaaccc catagttgtg cccccaaatg gttacttcag gtttgaggcc tgggtcaatc
6661 aattctacac actcaccccc atgggaactg gacaggggcg cagaagagtt caataatggc
6721 aggagctttc ttagctggat tggcaggtga cgccataaca agtggtgtcg ggtccctaat
6781 caatgctggg gccaatgcaa ttaaccaaaa ggtagaatat gactttaata aacagctcca
6841 attggcatcc ttcaaacatg acaaagagat gctgcaatca caagtactgg ccactaaaca
6901 gctccagcag gagatgatga acataaggca aggggtcttg tccgctggcg gcttttcccc
6961 tacagatgcc gcgagaggtg ctgtgaacgc gccgatgaca aaaattttgg attggaatgg
7021 aacaaggtac tttgccccaa atagtatgaa gacaaccagt tattcgggcc agttttccag
7081 caaccctgtg cataggcaac ccactttacc ccgttctgaa cccccaaaaa ttaaggttaa
7141 tagtgattct gctagtgtgt atagttctgc atctactgct ccttcacaat caactcactc
7201 aacggctttg actgcggggt ctagctcatc taggacaaca tcctcttctg cagcagcttc
7261 caccctatct aggactagtg actgggtgag aggacaaaat gaaaggctta gcccgtttat
7321 ggatggtgct ctccaaacaa cttttgtcac accaccctcg agcaaggctt catcatatgg
7381 gtcggtctca accgttccca aagctgtttt ggactcctgg actcctatgt tcaataccca
7441 taggcagcct ctcttcgctc atatgcgcag gcgaggggag tcacagattt ag
//