Typing tool
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Typing tool
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Complete norovirus genomes
| MT221254 | GII.6 | |
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| GII.P7 |
ORF1: 1..5094
ORF2: 5075..6718
ORF3: 6718..7404
LOCUS MT221254 7404 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 084_GII.P7_GII.6_Araguaina nonstructural
polyprotein (ORF1) and VP1 (ORF2) genes, complete cds; and VP2
(ORF3) gene, partial cds.
ACCESSION MT221254
VERSION MT221254.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7404)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7404)
AUTHORS Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr
Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao
Paulo 01246902, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7404
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="084_GII.P7_GII.6_Araguaina"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="09-Mar-2015"
/note="genotype: GII.P7_GII.6"
gene 1..5094
/gene="ORF1"
CDS 1..5094
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QIM61820.1"
/translation="MKMASNDATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKK
MLGAVPKGTKAPSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKS
VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLSEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 1..1002
/gene="ORF1"
/product="p48"
mat_peptide 1003..2100
/gene="ORF1"
/product="NTPase"
mat_peptide 2101..2619
/gene="ORF1"
/product="p22"
mat_peptide 2620..3018
/gene="ORF1"
/product="VPg"
mat_peptide 3019..3561
/gene="ORF1"
/product="Pro"
mat_peptide 3562..5091
/gene="ORF1"
/product="RdRp"
gene 5075..6718
/gene="ORF2"
CDS 5075..6718
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QIM61821.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYSQGNTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMHSESTDFDDG
QPTRFTPIGMGADDWSEWELPEHYGHFTLNMNLAPAVAPAFPGERILSFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAASSEAAVTLIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 6718..>7404
/gene="ORF3"
CDS 6718..>7404
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QIM61822.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSDPPKVKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPK"
ORIGIN
1 atgaagatgg cgtctaacga cgctaccact gcctttggca gccaaaactc tgtcaatgac
61 agtatcaaca ccgccccttc taataaagaa gaggttggtg cattctccaa catcaaagtt
121 ggttttaaga agatgctggg tgccgtcccc aaggggacca aagcacccag tagtgatcag
181 cactgcccct cagttaagat cgggaccaag acattaacag ttccccctga gcccccaaat
241 ggtgaagaca ccgtgcagtt tgatgcgaag tcggaaactg tgcgcgggtt accagacttg
301 acaacggtgc agaatgaaca cgaaaacaca ccatacactg tccccccatt gagtgaaagg
361 gagcacagac cagctactga accgcttcct ggcacaatac tggagatgtg ggatggtgaa
421 ttctaccatt actctgtgta cgtcagcggt ggcaaagccc taggggttca caaaccccct
481 gcagcgataa gcctcgcgac gatagagctc acccccatat ctctttattg gaggcccgtt
541 tacaccccca actatctggt ctgcccagac acgttgaaag gcctcgctgg tgagaagttc
601 ccctacacgg ccttcagcaa caactgttac aacttctgtt gctgggtgct tgagctcaat
661 gacacatggc ttagtaggag aagcatctct agaaccaccg gcttcttcaa accataccaa
721 tcttggaata ggaaacccct tccaaccgtt gatgatggaa agatcaaaaa ggtggccaac
781 gcaattctct gtgcacttgg gtcactgttt tcaaaaccaa tcaaggacct attgggcaag
841 cttaaaccat tgaacttgct gcacttgctc gcatcatgtg actggacgtt tgcgggtata
901 gtagagacag tcatcctaat ggcggaactt ttcggcatct tttggacacc gccagatgtt
961 tccagtttca tagcctccct gataggtgat tttgaattgc aagggcctga ggacctggct
1021 gtggagcttg tacccgtggt catgggtggc ataggaatgg ttctcggctt tactgctgag
1081 aagataggcc gcatgctatc gtccgctgca tcaacactac gggcgtgcaa agacttgggg
1141 aattatgctc ttgacatatt aaaactagtt atgaagtggt tcttcccaaa gaaagaagag
1201 aaagccgaga tggagaccct aagggcgatt gaggatgccg tcctggacat ggaagctata
1261 ggaaataacc atctcacaac cctcctcaag gacaaggata gcctcacggc tttcatgaag
1321 actctagacc tagaagaaga gaaggcaagg aagctgtcca ccaaatcatc ctcgccagac
1381 attgtcggca ccattaatgc catactagct agaatagctg ctgccaggtc cctcttgcac
1441 aaggctaaag aagaaatgtt tagcaggatc agacccgtgg ttgtcatgat ctcgggtaga
1501 cctggcattg gcaaaaccca catggcaaga cacttggcta agagtatcgc caacaccatg
1561 agcggcgacc agagagtggg gctcgtccca cgcaacgggg ttgatcattg ggacgcctac
1621 aggggagaga gggtggtttt atgggatgat tatggcatgg gaaaccctgt caaagacgcc
1681 ctaacactgc aagagctggc cgacacctgc ccagtaactc taaattgtga taggattgag
1741 aacaagggga agatgtttga cagtgatgtc atcataatca cgaccaattt agtcaaccca
1801 gcgcccctcg attatgtaaa cttcgaggcg tgctccagaa gggtcgactt tttggtctat
1861 gcagagtcac cagaaattga gaaggttaag agagacttcc ccggccaacc tgacatgtgg
1921 aaggaccatt ttaagccaga tttttcccac ataaaactga ctctagcccc acagggtgga
1981 tttgacaaga atggcaacac cccgcatggt aagggcacca tgcgatccct aacccaggga
2041 tccctgactg caagggttgc aggtcttgtt catgagagga gagacgagtt tcagctccag
2101 gggaacgacc ttcaaacata taactttgat accaacagag tctctgcatt taggaagctg
2161 gccgcagaca acaagtatgg gatcatggag actatgagag tgggcacagc gcttaagagt
2221 gtcaagacct tggaagatct gaaagttgca ctgagggatg tgaagttcaa tgagtgtgag
2281 ataatttaca gaaactccaa ataccgagtc tcttccaatg gtaaaggttc tgtctctgtt
2341 gacaaagttg aagaccaaac atcccagacc gcaaacgaag tgggtgcagc actccttaga
2401 ctcagacagg caagagccag atactatgtc agctgcttcc aagacctcgt ttacactcta
2461 atacaggtcg ccggagcatc attcgttgtc aacaggatct ctaaaaggtt ctgctgggag
2521 agatgggtca aaccaaccga gacccaggaa acgagtgaat ccgaaaagga agtggcccaa
2581 ggcagatggg agattgagcc caaggacaca gaaccagaag gtaagaaggg taagaacaag
2641 aaaggaagag gcaagaaaca cacagctttc tccagtaaag gcctgagtga tgaggagtat
2701 gacgagttca agagaatcag agaagaaagg aacggaaaat actccattga ggaatacctg
2761 caagaccggg atcgctacta tgaggaagtg gcggttgccc gggcgacaga ggaggacttc
2821 tgtgaagagg aggaggccaa gataagacaa agaatctttc gccccacaaa gaaacagagg
2881 aaggaagaaa ggggggtgct tggtttggtt actggctcag acatcaggaa gagaagacca
2941 gacgattttc aaccgaaggg caacctgtgg gcagacgaca ccaggagtgt ggactacaac
3001 gagagacttg atttcgaggc tcccccgagt gtctggtcaa gaatagtccc attgggcact
3061 ggctggggct tctgggtctc atcaaacctc ctgatcacaa caacgcacgt cctacctaag
3121 gggattaatg aactctttgg agttgaaatc aaacagattc agatccataa gtctggagag
3181 ttctgcaggt tcagattccc aagaccaatt agaccagatg tcacagggct cgtgttggag
3241 gaaggcgctc cagaaggcac tgtctgctct atactcgtaa agagacctac aggtgagatg
3301 atccccctgg cagtgaggat gggcacgcat gcatccatga aaatacaggg taggaccgtc
3361 ggtggtcaga tgggaatgct cctcacaggg gcaaatgcga agaacatgga tcttggcacc
3421 ggtcctggtg actgcggttg cccttacatc tacaaacgtg gcaatgatat agttgtcgcg
3481 ggtgtccaca ccgcagcagc ccggggaggc aacactgtca tatgtgccac tcaagggcaa
3541 gatggggaag cagtccttga gggaaatgag aaccttggca cttactgcgg tgctccaatc
3601 ctgggtccag gcaaggcgcc caaacttagc acgaagacca agttctggcg ctcatcacca
3661 gacgctttgc cgccaggcac ttatgagcct gcctacttgg gaggtaagga ccctagagtg
3721 gaaaaaggac catccctgca gcaagtcatg agggaccagc taaaaccttt cacagaaccc
3781 aggggtaagc cacctagacc tgcagtctta gaagaagcca aaaagacagt gatgaatgtt
3841 ctagagcaaa ccattgaccc tgctaaaccg tggacctatt cccaagcatg cgcctcactg
3901 gacaagacca cttccagtgg tagcccccat catgtcagga aaaatgacca ttggaatggg
3961 gaatccttca ctggccccct cgcagaccaa gcatccaaag ccaatctcat gtacgagcag
4021 gccaaacatg tgcagcccgt gtacacggcc gcacttaaag atgaactagt caaaactgac
4081 aagatctaca agaagataaa gaaaaggctc ttatgggggt cggatcttgg tacaatgatc
4141 aggtgtgcca gggcctttgg cggtctcatg gatagcatga aggcaagctg catagccctc
4201 ccatgtaggg taggaatgaa catgaatgaa gatggcccca tcatatttga caagcattct
4261 aagtacaggt accattatga tgctgactat tccaggtggg actcaaccca gcaaaggagc
4321 attctctcgg ccgctatgga agtgatggtg cggttctctg ctgaaccaga gctggcacaa
4381 gtggtcgcag aggacctcct ggcacccagc caactagatg ttggcgattt cgtcatctca
4441 gtccaggagg gtctgccatc aggggtccca tgcacatcac aatggaattc aatagcacac
4501 tggatcctaa ccttgagtgc aatggcagaa gtatcgggtc tctcaccaga tgttgttcaa
4561 gcccactcct gtttctcatt ctacggtgat gatgagatcg tcagcactga catcaacctt
4621 gatcccatga agttgacaca gaagctcaga gagtatggcc tggtccccac ccgacctgac
4681 aaaactgagg gtcccctcgt aataactgaa gatctcaccg gcctaacgtt cctgcgtagg
4741 tcaattgcac gggacccagc tgggtggttt ggaaaattgg accaagactc aatcctcaga
4801 cagttgtact ggacaagggg ccccaaccat gagaacccat atgagagcat ggtccctcat
4861 tcccagcggg ccacacaact tatggccctt ctcagtgagg cctcactgca tggtccccag
4921 ttttacaaga aagttagcaa gatggttatt aatgagatca aaagtggtgg tctggaattc
4981 tatgtgccca gacaagaggc catgttcaga tggatgagat tctctgacct cagcacatgg
5041 gagggcgatc gcaatcttgc tcccgagggt gtgaatgaag atggcgtcga atgacgctgc
5101 tccatcgaat gatggtgctg ccaacctcgt accagaggcc accaatgagg ttatggcact
5161 tgagccggtg gtgggagcct caattgctgc tcctgtcgtc ggtcaacaaa atataattga
5221 cccctggatt agagaaaatt ttgttcaggc accacagggt gagtttactg tttcaccaag
5281 gaactcacct ggtgagatgc ttctaaatct tgaattaggc cctgagctca acccttatct
5341 gagtcacttg tcccgcatgt ataacggcta tgctggtggt atgcaggttc aggtggtcct
5401 agctgggaat gcgttcacag ctggtaaaat catctttgcc gccgtcccac cacatttccc
5461 tgttgagaac attagtgcag cccaaatcac aatgtgcccc catgtaattg ttgatgtaag
5521 acagcttgag ccagtgcttt tgcccctccc tgacataagg aatagattct ttcattatag
5581 tcagggaaat acccccagga tgagacttgt ggctatgttg tatacacccc ttagagcaaa
5641 ttctggtgag gatgtgttta cggtgtcttg cagagtcctg acccgccctg cccccgactt
5701 tgagttcacg tttttggtgc caccaactgt ggagtcaaag actaagccct ttacactccc
5761 tattctgact cttggagagc tgtccaactc cagattcccc gctccgatag acatgttgta
5821 cactgacccc aatgaggcaa ttgtggtgca accacaaaat ggcaggtgca ctctagatgg
5881 aacacttcaa gggaccaccc aactggtacc cacccaaatt tgctccttca ggggcacgct
5941 aattagccag acgtcgaggt ctgcagattc aacagattca gccccacggg tgaggaacca
6001 ccctctccac gttcagctga agaacctcga tgggacacca tatgacccaa cagatgaggt
6061 gccagcagtt ttgggtgcca tagatttcaa aggaactgtg tttggggtcg ctagccaaag
6121 gaacaccaca gggaactcta taggagcaac ccgcgcccat gaagtgcaca tagacaccac
6181 aaaccctagg tataccccaa agcttggctc tgtgttgatg cattctgaat ctactgattt
6241 tgatgatgga cagcctaccc gcttcacccc cattggcatg ggagccgatg attggagcga
6301 gtgggaattg cctgaacatt atggtcactt cactcttaat atgaatttgg cccctgcagt
6361 cgccccagct ttccctggtg agcgcattct ctccttcagg tcagtggtgc catctgctgg
6421 tggctatgga tcaggtcaca tagattgtct cataccacag gaatgggttc agcatttcta
6481 ccaggaggcc gcttcatcag aggccgcggt cactcttatc agatatgtca accctgacac
6541 tggaagaaac atctttgagg caaaactgca tagagaaggg ttcatcactg tggcaaattc
6601 tggaaacaac cccatagttg tgcccccaaa tggttacttc aggtttgagg cctgggtcaa
6661 tcaattctac acactcaccc ccatgggaac tggacagggg cgcagaagag ttcaataatg
6721 gcaggagctt tcttagctgg attggcaggt gacgccataa caagtggtgt cgggtcccta
6781 atcaatgctg gggccaatgc aattaaccaa aaggtagaat atgactttaa taaacagctc
6841 caattggcat ccttcaaaca tgacaaagag atgctgcaat cacaagtact ggccactaaa
6901 cagctccagc aggagatgat gaacataagg caaggggtct tgtccgctgg cggcttttcc
6961 cctacagacg ccgcgagagg tgctgtgaac gcgccgatga caaaaatttt ggattggaat
7021 ggaacaaggt actttgcccc aaatagtatg aagacaacca gttattcggg ccagttttcc
7081 agcaaccctg tgcataggca acccacttta ccccgttctg accccccaaa agttaaggtt
7141 aatagtgatt ctgctagtgt gtatagttct gcatctactg ctccttcaca atcaactcac
7201 tcaacggctt tgactgcggg gtctagctca tctaggacaa catcctcttc tgcagtagct
7261 tccaccctat ctaggactag tgactgggtg agaggacaaa atgaaaggct tagcccgttt
7321 atggatggtg ctctccaaac aacttttgtc acaccaccat cgagcaaagc ttcatcatat
7381 gggtcggtct caaccgtccc caaa
//