Typing tool
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Typing tool
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Complete norovirus genomes
| MT221253 | GII.6 | |
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| GII.P7 |
ORF1: 1..5076
ORF2: 5057..6700
ORF3: 6700..7476
LOCUS MT221253 7476 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 012_GII.P7_GII.6_Araguaina nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION MT221253
VERSION MT221253.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7476)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7476)
AUTHORS Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2020) Virology, Adolfo Lutz Institute, Av Dr
Arnaldo 355, Centro de Virologia, Cerqueira Cesar, Sao Paulo, Sao
Paulo 01246902, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7476
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="012_GII.P7_GII.6_Araguaina"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="10-Oct-2014"
/note="genotype: GII.P7_GII.6"
gene <1..5076
/gene="ORF1"
CDS <1..5076
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QIM61817.1"
/translation="DATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKKMLGAVP
KGTKAPSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTTVQNEHE
NTPYTVPPLSEREHKPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAAISLA
TIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWL
SRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLK
PLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQGPEDLA
VELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKK
EEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKS
SSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAK
SIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADTCPV
TLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVK
RDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAG
LVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKSVKTLED
LKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALLRLRQA
RARYYVSCFQDLVYTLIQVAGASFVVNRISKRYCWERWVKPTETQEMIASEKEVALLT
FWFEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYL
QDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDIRKR
RPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTH
VLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILVK
RPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYK
RGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAPKLS
TKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPPRPV
VLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESFTGP
LADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCAR
AFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSIL
SAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAH
WILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTR
PDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYES
MVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKGGGLEFYVPRQEAMFRWMRF
SDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..984
/gene="ORF1"
/product="p48"
mat_peptide 985..2082
/gene="ORF1"
/product="NTPase"
mat_peptide 2083..2601
/gene="ORF1"
/product="p22"
mat_peptide 2602..3000
/gene="ORF1"
/product="VPg"
mat_peptide 3001..3543
/gene="ORF1"
/product="Pro"
mat_peptide 3544..5073
/gene="ORF1"
/product="RdRp"
gene 5057..6700
/gene="ORF2"
CDS 5057..6700
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QIM61818.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVHVQHGRCTLDGTLQGTTQ
LVPIQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 6700..7476
/gene="ORF3"
CDS 6700..7476
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QIM61819.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHMRRRGESQI"
ORIGIN
1 gacgctacca ctgcctttgg cagccaaaac tctgtcaatg acagtatcaa caccgcccct
61 tctaacaaag aagaggttgg tgcattctcc aacatcaaag ttggttttaa gaagatgctg
121 ggtgccgtcc ccaaggggac caaagcaccc agtagtgatc agcactgccc ctcagttaag
181 atcgggacca agacattaac agttccccct gagcccccaa atggtgaaga caccgtgcag
241 tttgatgcga agtcggaaac tgtgcgcggg ttaccagact tgacaacggt gcagaatgaa
301 cacgaaaaca caccatacac tgtcccccca ttgagtgaaa gggagcacaa accagctact
361 gaaccgcttc ctggcacaat actggagatg tgggatggtg aattctacca ttactctgtg
421 tacgtcagcg gtggcaaagc cctaggggtt cacaagcccc ctgcagcgat aagcctcgcg
481 acgatagagc tcacacccat atctctttat tggaggcccg tttacacccc caactatctg
541 gtctgcccag acacgttgaa gggccttgct ggtgagaagt tcccctacac ggccttcagc
601 aacaactgtt acaacttctg ttgctgggtg cttgagctca atgacacatg gcttagtagg
661 agaagcatct ctagaaccac cggcttcttc aaaccatacc aatcttggaa taggaaaccc
721 cttccaaccg ttgatgatgg aaagatcaaa aaggtggcca acgcaattct ctgtgcactt
781 gggtcactgt tctcaaaacc aatcaaggac ctattgggca agcttaaacc attgaacttg
841 ctgcacttgc tcgcatcatg tgactggacg tttgcgggta tagtagagac agtcatccta
901 atggcggaac ttttcggcat tttttggaca ccgccagatg tttccagttt catagcctcc
961 ctgataggtg attttgaatt gcaagggcct gaggacctgg ctgtggagct tgtacccgtg
1021 gtcatgggtg gcataggaat ggttctcggc tttactgctg agaagatagg ccgcatgcta
1081 tcgtccgctg catcaacact acgggcgtgc aaagacttgg ggaattatgc tcttgacata
1141 ttaaaactag ttatgaagtg gttcttccca aagaaagaag agaaagccga gatggagaca
1201 ctaagggcga ttgaggatgc cgtcctggac atggaagcta taggaaataa ccatctcaca
1261 accctcctca aggacaagga tagcctcacg gctttcatga agactctaga cctagaagaa
1321 gagaaggcaa ggaagctgtc caccaaatca tcctcgccag acattgtcgg caccattaat
1381 gccatactag ctagaatagc tgctgccagg tccctcttgc acaaggctaa agaagaaatg
1441 tttagcagga tcagacccgt ggttgtcatg atctcgggta gacctggcat tggcaaaacc
1501 cacatggcaa gacacttggc taagagtatc gccaacacca tgagcggcga ccagagagtg
1561 gggctcgtcc cacgcaacgg ggttgatcat tgggacgcct acaggggaga gagggtggtt
1621 ttatgggatg attatggcat gggaaaccct gtcaaagacg ccctaacact gcaagagctg
1681 gccgacacct gcccagtaac tctaaattgt gataggattg agaacaaggg gaagatgttt
1741 gacagtgatg tcatcataat cacgaccaat ttagtcaacc cagcgcccct cgattatgta
1801 aacttcgagg catgctccag aagggtcgac tttctggtct atgcagagtc accagaaatt
1861 gagaaggtta agagagactt tcccggccaa cctgacatgt ggaaggacca ttttaagcca
1921 gatttttccc acataaaact gactctagcc ccacagggtg gatttgacaa gaatggcaac
1981 accccgcatg gtaagggcac catgcgatcc ctaacccagg gatccctgac tgcaagggtt
2041 gcaggtcttg ttcacgagag aagagacgag tttcagctcc aagggaacga ccttcaaaca
2101 tataactttg ataccaacag agtctctgca tttaggaagc tggccgcaga caacaagtat
2161 gggatcatgg agactatgag agtgggcaca gcgcttaaga gtgtcaagac cttggaagat
2221 ctgaaagttg cactgaggga tgtgaagttc aatgagtgtg agataattta cagaaactcc
2281 aaataccgag tctcttccaa tggtaaaggt tctgtctctg ttgacaaagt tgaagaccaa
2341 acatcccaga ccgcaaacga agtgggtgca gcactcctta gactcagaca ggcaagagcc
2401 agatactatg tcagctgctt ccaagacctc gtttacactc taatacaagt cgccggagct
2461 tcattcgttg tcaacaggat ctcgaaaagg tactgctggg agagatgggt caaaccaacc
2521 gaaacccagg aaatgattgc atccgaaaag gaagttgccc ttcttacctt ctggtttgag
2581 cccaaggaca cagaaccaga aggtaagaag ggtaagaaca agaaaggaag aggcaagaaa
2641 cacacagctt tctccagtaa aggcctgagt gatgaggagt atgacgagtt caagagaatc
2701 agagaagaaa ggaacggaaa atactccatt gaggaatacc tgcaagaccg ggatcgctac
2761 tatgaggaag tggcggttgc ccgggcgaca gaggaggact tctgtgaaga ggaggaggcc
2821 aagataagac aaagaatctt tcgccccaca aagaaacaga ggaaggaaga aaggggggtg
2881 cttggtttgg ttactggctc agacatcagg aagagaagac cagacgattt tcaaccgaag
2941 ggcaacctgt gggcagacga caccaggagt gtggactaca acgagagact tgatttcgag
3001 gctcccccga gtgtctggtc aagaatagtc ccattgggca ctggctgggg cttctgggtc
3061 tcatcaaacc tcctgatcac aacaacgcac gtcctaccta aggggattaa tgaactcttc
3121 ggagttgaga tcaaacagat tcagattcat aagtctggag agttctgcag gttcagattc
3181 ccaagaccaa ttagaccaga tgtcacaggg ctcgtgttgg aggaaggcgc tccagaaggc
3241 actgtctgct ctatactcgt aaagagacct acaggtgaga tgatccccct ggcagtgagg
3301 atgggcacgc atgcatccat gaaaatacag ggtaggaccg tcggtggtca gatgggaatg
3361 ctcctcacag gggcaaatgc gaagaacatg gatcttggca ccggtcctgg tgactgcggt
3421 tgcccttaca tctacaaacg tggcaatgat atagttgtcg cgggtgtcca caccgcagca
3481 gcccggggag gcaacactgt catatgtgcc actcaagggc aagatgggga agcagtcctt
3541 gagggaaatg agaaccttgg cacttactgc ggtgctccaa tcttgggtcc aggcaaggcg
3601 cccaaactta gcacgaagac caagttctgg cgttcatcac cagacgcttt gccgccaggc
3661 acttatgagc ctgcctactt gggaggtaag gaccctagag tggaaaaagg accatccctg
3721 cagcaagtca tgagggacca gctaaaacct ttcacagaac ccaggggtaa gccacctaga
3781 cctgtagtct tagaagaagc caaaaagaca gtgatgaatg ttctagagca aaccattgac
3841 cctgctaaac cgtggaccta ttcccaagca tgcgcctcac tggacaagac cacttccagt
3901 ggtagccccc atcatgtcag gaaaaatgac cattggaatg gggaatcctt cactggcccc
3961 ctcgcagacc aagcatccaa agccaacctc atgtacgagc aggccaaaca tgtgcagccc
4021 gtgtacacgg ccgcacttaa agatgaacta gtcaaaactg acaagatcta caagaagata
4081 aagaaaaggc tcttatgggg gtcggatctt ggtacaatga tcaggtgtgc cagggccttt
4141 ggcggtctca tggatagcat gaaggcaagc tgcatagccc tcccatgtag ggtaggaatg
4201 aacatgaatg aagatggccc catcatattt gacaagcatt ctaagtacag gtaccattat
4261 gatgctgact attccaggtg ggactcaacc cagcaaagga gcattctctc ggccgccatg
4321 gaagtgatgg tgcggttctc tgctgaacca gagctggcac aagtggttgc agaggacctc
4381 ctggcaccca gccaactaga tgttggcgat ttcgtcatct cagtccagga gggtctgcca
4441 tcaggggtcc catgcacatc acaatggaat tcaatagcac actggatcct aaccttgagt
4501 gcaatggcag aagtatcggg tctctcacca gatgttgttc aagcccactc ctgtttctca
4561 ttctacggtg atgatgagat cgtcagcact gacatcaacc ttgatcccat gaagttgaca
4621 cagaagctca gagagtatgg cctggtcccc acccgacctg acaaaactga gggtcccctc
4681 gtgataactg aagatctcac cggcctaacg ttcctgcgta ggtcaattgc acgggaccca
4741 gctgggtggt ttggaaaatt ggaccaagac tcaatcctca gacagttgta ttggacaagg
4801 ggccccaacc atgagaaccc atatgagagc atggtccctc attcccagcg ggccacacaa
4861 cttatggccc ttctcggtga ggcctcactg catggtcccc agttctacaa gaaagttagc
4921 aagatggtta ttaatgagat caaaggtggt ggtctggaat tctacgtgcc cagacaagag
4981 gccatgttca gatggatgag attctctgac ctcagcacat gggagggcga tcgcaatctt
5041 gctcccgagg gtgtgaatga agatggcgtc gaatgacgct gctccatcga atgatggtgc
5101 tgccaacctc gtaccagagg ccaccaatga ggttatggca cttgagccgg tggtgggagc
5161 ctcaattgct gctcccgtcg tcggtcaaca aaatataatt gacccctgga ttagagaaaa
5221 ttttgttcag gcaccacagg gtgagtttac tgtttcacca aggaactcac ctggtgagat
5281 gcttctaaat cttgaattag gccctgagct caacccttat ctgagtcact tgtcccgcat
5341 gtataacggc tatgctggtg gtatgcaggt tcaggtggtc ctagctggga atgcgttcac
5401 agctggtaaa atcatctttg ccgccgtccc accacatttc cctgttgaga acattagtgc
5461 ggcccaaatc acaatgtgcc cccatgtaat tgttgatgta agacagcttg agccagtgct
5521 tttgcccctc cctgacataa ggaatagatt ctttcattat aatcaggaaa atacccccag
5581 gatgagactt gtggctatgt tgtatacacc ccttagagca aattctggtg aggatgtgtt
5641 tacggtgtct tgcagagtcc tgacccgccc tgcccccgac tttgagttca cgtttttggt
5701 gccaccaact gtggagtcaa agactaagcc ctttacactc cctattctga ctcttggaga
5761 gctgtccaac tccagattcc ccgctccgat agacatgttg tacactgacc ccaatgaggc
5821 aattgtggtg catgtacaac atggcaggtg cactctagat ggaacacttc aagggaccac
5881 ccaactggta cccatccaaa tttgctcctt caggggcacg ctaattagcc agacgtcgag
5941 gtctgcagat tcaacagatt cagccccacg ggtgaggaac caccctctcc acgttcagct
6001 gaagaacctc gatgggacac catatgaccc aacagatgag gtgccagcag ttttgggtgc
6061 catagatttc aaaggaactg tgtttggggt cgctagccaa aggaacacca cagggaactc
6121 tataggagca acccgcgccc atgaagtgca catagatacc acaaacccta gatacacccc
6181 aaagcttggc tctgtgttga tgtattctga atctactgat tttgatgatg gacaacccac
6241 ccgcttcacc cccattggca tgggagccga tgattggcac caatgggaat tgcctgaata
6301 ttctggtcac ctcactctta acatgaattt ggcccccgca gttgcccctg ctttccctgg
6361 tgagcgcatt ctcttcttca gatcagtggt gccgtctgct ggtggctatg gatcaggtca
6421 catagattgc ctcatcccac aggagtgggt tcagcatttc taccaggagg ccgctccatc
6481 acagtccgcg gtggctctta tcagatatgt caaccctgac actggaagaa acatctttga
6541 ggcaaaactg catagagaag ggttcatcac tgtggcaaat tctggaaaca accccatagt
6601 tgtgccccca aatggttact tcaggtttga ggcctgggtc aatcaattct acacactcac
6661 ccccatggga actggacagg ggcgcagaag agttcaataa tggcaggagc tttcttagct
6721 ggattggcag gtgacgccat aacaagtggt gtcgggtccc taatcaatgc tggggccaat
6781 gcaattaacc aaaaggtaga atatgacttt aataaacagc tccaattggc atccttcaaa
6841 catgacaaag agatgctgca atcacaagta ctggccacta aacagctcca gcaggagatg
6901 atgaacataa ggcaaggggt cttgtccgct ggcggctttt cccctacaga tgccgcgaga
6961 ggtgctgtga acgcgccgat gacaaaaatt ttggattgga atggaacaag gtactttgcc
7021 ccaaatagta tgaagacaac cagttattcg ggccagtttt ccagcaaccc tgtgcatagg
7081 caacccactt taccccgttc tgaaccccca aaaattaagg ttaatagtga ttctgctagt
7141 gtgtatagtt ctgcatctac tgctccttca caatcaactc actcaacggc tttgactgcg
7201 gggtctagct catctaggac aacatcctct tctgcagcag cttccaccct atctaggact
7261 agtgactggg tgagaggaca aaatgaaagg cttagcccgt ttatggatgg tgctctccaa
7321 acaacttttg tcacaccacc ctcgagcaag gcttcatcat atgggtcggt ctcaaccgtt
7381 cccaaagctg ttttggactc ctggactcct atgttcaata cccataggca gcctctcttc
7441 gctcatatgc gcaggcgagg ggagtcacag atttag
//