Typing tool
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Typing tool
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Complete norovirus genomes
| MT158854 | GII.3 | |
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| GII.P12 |
ORF1: 1..5100
ORF2: 5081..6727
ORF3: 6727..7491
LOCUS MT158854 7491 bp RNA linear VRL 08-APR-2021
DEFINITION Norovirus GII isolate 25-GII.P12-GII.3 nonstructural polyprotein
(ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MT158854
VERSION MT158854.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7491)
AUTHORS Li,Q., Yao,P., Jiang,J., Mao,X., Wang,F. and Zhang,W.
TITLE Molecular identification of emergent GII.Pe-GII.4 and
GII.P17-GII.17 norovirus genotypes, China, 2019
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7491)
AUTHORS Li,Q., Yao,P., Jiang,J., Mao,X., Wang,F. and Zhang,W.
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2020) Performance management office, Shanghai
Public Health Clinical Center, No. 2901 Caolang Road, Shanghai
201508, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7491
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="25-GII.P12-GII.3"
/isolation_source="Anal swab"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="25-Nov-2018"
/note="genotype: GII.P16-GII.2"
gene 1..5100
/gene="ORF1"
CDS 1..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QII23005.1"
/translation="MKMASNDASAAAAANGNNDNAKSSSDGMLSSMAVTFKRALGARQ
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
ARKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKGVKTM
SELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASKDGC
PKPQDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTIICATQGSEGEATLEGGDSKGTYCGAPILG
PGNAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGRPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
SGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 1..990
/gene="ORF1"
/product="p48"
mat_peptide 991..2088
/gene="ORF1"
/product="NTPase"
mat_peptide 2089..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6727
/gene="ORF2"
CDS 5081..6727
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QII23006.1"
/translation="MKMASSDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6727..7491
/gene="ORF3"
CDS 6727..7491
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QII23007.1"
/translation="MAGAFIAGLAGDILTNTAGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTSSSGSSVRSLSTQVTSLSS
HSSGSSRSSGPTVASSLPSSNRTRDWVNQQNFNLEPHLPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgctg ctaatggcaa caacgacaac
61 gcaaaatctt caagtgacgg aatgctttct agcatggctg tcacttttaa acgagccctc
121 ggggcgcggc aaaaacagcc tcccccgagg gaaataccac agaggcctcc acggccaccc
181 accccagaac tggtcaaaaa gatccctcct cccccaccca atggggagga tgagctagtg
241 gtctcttata gcgccaaaga tggcgtctct ggtttgcctg aacttaccac tgtctggcaa
301 ccggatgaga ccaacacggc gttcagtgtt ccccctctca accagaggga gaacagggac
361 gccaaggagc cgctgaccgg aacaatcctg gaaatgtggg acggggagat ctatcattat
421 ggtctgtatg tggagcgagg ccttgtactt ggtgtgcaca aaccaccagc tgccatcagc
481 ctcgccaagg ttgaactagc accactctct ctgttttgga ggccagtgta cacaccacag
541 tatctcatct ctccagacac tcttaggaga ctgcatggag agtcattccc ctacacagcc
601 tttgacaaca actgctatgc cttctgttgt tgggttctgg acctaaacga ctcgtggttg
661 tgcaggagaa tgatccagag aacaactggc ttcttcaggc cttaccaaga atggaacagg
721 aaacccctcc ccaccatgga tgactctaaa ttgaagaagg tagccaacat attcttgtgt
781 gcgctatctt cgctattcac taggcccatc aaagacataa taggaaaggt gagaccgctc
841 aacatcctta acatcctagc ctcatgtgat tggacttttg caggcatagt ggaatctttg
901 atcctcttgg cagagctctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc
961 gcccccttac taggtgacta cgaactgcag gggcctgagg accttgcagt ggaactcgta
1021 ccagtagtga tgggagggat tggtttggtg ttaggattca ccaaagagaa gatcggaaaa
1081 atgttgtcat ccgctgcttc caccttaaga gcttgtaaag accttggtgc atacgggctg
1141 gaaatcctaa aattggtcat gaaatggttc ttcccaaaga aagaggaagc aaatgagcta
1201 gctatggtga ggtccatcga ggatgcggtg ctggacctcg aagcaattga gaacaaccac
1261 atgactgccc tcctcaaaga caaagacagc ttggcaacct acatgaggac ccttgacctc
1321 gaggaggaga aagccaggaa gctttcaacc aagtctgctt cacctgacat cgtgggcaca
1381 atcaacgctc ttctggcgag aatcgccgct gcacgttccc tggtgcatcg ggcgaaagag
1441 gaactctcca gcagaccaag acctgtcgtt gttatgatat caggtaggcc agggataggg
1501 aaaactcacc ttgccaggga gctagccagg aagatcgcag cttcactcac aggggaccag
1561 cgcgtgggtc tcatccctcg caatggcgtt gaccactggg atgcatacaa gggagaaaga
1621 gtcgtcctat gggacgatta tggaatgagc aatcccatcc acgacgccct caggttacag
1681 gaacttgctg acacctgccc ccttacgcta aactgtgaca ggattgagaa caaaggaaag
1741 gtctttgaca gtgatgccat aatcatcacc accaatctag ccaacccagc accattggac
1801 tatgtcaact ttgaagcatg ctcgaggcgc attgacttcc tcgtgtacgc agaagcccct
1861 gaggtcgaga aagcaaagcg tgatttccca ggccaacctg acatgtggaa gaacgcattt
1921 agctctgatt tctcgcacat aaaactggcg ctggctcccc agggtggttt cgacaagaac
1981 ggaaacaccc cacacgggaa aggcgtcatg aaaaccctca ccactggttc cctcatcgcc
2041 cgagcttcag ggctactcca cgagaggttg gatgaatacg agctacaggg cccaactccc
2101 accaccttta actttgatcg caacaaggtg cttgcgttca gacaacttgc tgccgaaaac
2161 aagtatggac tgctggacac aatgagagtt ggaaaacagc tcaagggtgt taagaccatg
2221 tcagagctca aacaggcact caaaaatgtc gcaattaaga gttgtcagat agtgtatggt
2281 ggctgcacct acaggcttga gtctgatggc aagggtgatg taaaagttga cagagttcag
2341 aacgccacag tgcagaccaa caatgagctt gccggcgcac tacaccatct taggtgcgcc
2401 agaatcagat attatgttaa gtgtgttcag gaggccctgt attccatcat ccaaatcgct
2461 ggggctgcat ttgttaccac gcgcattgtc aagcgcatga acatacaaga tctctggtcc
2521 aagccacagg tggaggacac agaggaaacc gctagcaagg atgggtgccc aaaaccccag
2581 gatgatgaag agtttgttgt ctcatccgat gacatcaaaa ccgagggcaa gaaagggaag
2641 aacaagtctg gccgtggcaa gaagcacaca gcattttcaa gtaaaggtct cagtgatgaa
2701 gagtacgatg agtacaaaag aattagagaa gaaagaaatg gcaaatactc catagaggaa
2761 tacctccagg acagagacag atattatgag gaggtggcca ttgccagggc aaccgaagag
2821 gacttctgtg aagaagaaga ggccaagatc cgacagagga tcttcaggcc aacaaggaaa
2881 caacgcaaag aggagagagc ctctctcggt ttggtcacag gttctgaaat caggaagagg
2941 aacccagacg acttcaagcc taaaggaaag ctgtgggctg atgatgacag gagtgttgac
3001 tacaatgaga aactcaattt tgaagcccca ccaagcatct ggtcgaggat agtcaacttt
3061 ggctcaggtt ggggtttttg ggtttccccc agcctgttca taacatcaac tcatgtcata
3121 ccccagggcg cacaggagtt ctttggtgta cccatcaaac aaatccagat acacaagtca
3181 ggtgaattct gccgcttgag gtttccaaag ccgatcagaa ctgacgtgac aggcatgatc
3241 ttagaagaag gtgcacccga agggaccgtg gtcacattac tcatcaaaag accaactgga
3301 gagctcatgc ccctggcagc cagaatggga acccacgcaa ccatgaagat acaagggcgc
3361 actgttggag gtcaaatggg catgctccta actgggtcca acgccaagag tatggacctg
3421 ggcaccacac caggtgactg tggctgcccc tacatttaca agagggggaa tgactacgtg
3481 gtcattgggg tccatacagc tgctgcccgt ggaggaaaca ctatcatttg tgccacccaa
3541 gggagcgagg gagaagccac acttgaaggc ggtgatagca aggggaccta ctgcggtgca
3601 ccaatcttag gcccaggaaa tgccccaaaa ctcagcacca agactaagtt ctggaggtca
3661 tccacggcac cactcccacc tggtacctat gaaccagctt acctcggtgg caaggacccc
3721 agagttaagg gtggcccttc actgcaacaa gttatgaggg atcaactgaa accattcact
3781 gagcctaggg gtaggccacc aaaaccaagt gtgctggaag ctgccaagaa aaccatcgtc
3841 aatgtcctag aacagacaat tgacccacct caaaaatggt cgtttgcgca ggcatgcgca
3901 tccctagaca agaccacttc tagcggtcat ccgcaccaca tgcggaagaa tgactgctgg
3961 agcggggagt ccttcacagg aaaattggca gaccaggctt ccaaggccaa cctgatgttt
4021 gaggagggga agaacatgac cccagtttac acgggtgcgc ttaaggacga gctggtcaag
4081 actgacaaga tttatggtaa gattaaaaag aggcttctct ggggttcgga tctggcgacc
4141 atgattcgtt gcgctcgagc atttgggggt ctgatggagg aactcaaagc acattgtgtc
4201 acactacctg ttagggtggg tatgaatatg aatgaggatg gccctatcat ctttgagaga
4261 cactccagat ataaatatca ctatgatgct gactactccc ggtgggattc aacacaacaa
4321 agagctgtgt tggcagcagc cttagaaatc atggtcaagt tttccccaga gccacacctg
4381 gcccaaaagg ttgcagaaga ccttctttct cccagcgtga tggacgtggg tgatttcaaa
4441 atatcaatca atgagggtct cccctccgga gtgccctgca cctcccaatg gaattccatc
4501 gcccactggc tcctcactct ctgtgcactc tccgaggtta caaatctgtc ccctgatatt
4561 attcaggcta actctctctt ttctttctac ggtgatgatg aaattgtgag tacagacata
4621 aaattggacc cagaaaaact gacagcaaaa ctcaaggaat acgggttgaa accgacccgc
4681 cctgataaaa ctgaagggcc tcttgtcatt tccgaagacc tgaatggcct aaccttcctg
4741 cggaggaccg tgactcgcga cccagcaggc tggtttggaa agttggaaca gagctcaata
4801 ctcagacaaa tgtactggac tagaggcccc aaccacgaag atccatctga aacaatgata
4861 ccacactccc agaggcccat acaattgatg tctttgctgg gtgaggcagc gctccacggc
4921 ccagcattct acagcaaaat cagcaaactg gtcattgcag aattgaagga gggtggcatg
4981 gatttttacg tgccgagaca agaaccaatg ttcagatgga tgagattctc ggatctgagc
5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga
5101 cgccacccca tctaatgatg gtgccgccgg cctcgtccca gagatcaaca atgaggcaat
5161 ggcgctagat ccagtggcgg gtgcagcgat agcagcaccc ctcaccggcc agcaaaatat
5221 aattgatccc tggattatga ataattttgt gcaagcacct ggtggtgagt tcacagtgtc
5281 tcctaggaat tcccctggtg aagtgctcct caatttggag ttgggcccag agataaaccc
5341 ctatctggcc catcttgcta gaatgtataa tggttatgca ggtgggtttg aagtgcaggt
5401 agtcctggct ggaaatgcgt ttacagcagg aaagataatc tttgcagcta taccccctaa
5461 cttcccaatt gacaatctaa gtgcagcaca gatcacaatg tgcccacatg tgattgtgga
5521 tgtcaggcag ctggaaccgg tcaacctccc gatgcctgac gttcgcaaca atttcttcca
5581 ctacaaccaa gggtctgatt cgagattgcg cttggttgca atgctgtaca cacctcttag
5641 ggcaaataac tctggagatg atgttttcac tgtgtcttgt agagtgctga ctagacctag
5701 tcctgaattt tcatttaatt tccttgtgcc acccactgtg gagtcaaaga caaaaccttt
5761 taccctccca atcctgacta tctctgaaat gtctaattct aggtttccag tgccgattga
5821 ttctctgcac accagcccaa ctgagaatat tgttgtccaa tgtcaaaatg gacgcgtcac
5881 tcttgatggc gagttgatgg gcaccactca gctcttacct agtcaaatct gtgctttcag
5941 gggcgtgctc actagatcaa caagcagggc tagtgaccag gccgacacag caacccctag
6001 attgtttaat tattattggc acatacaatt ggataatcta aatgggactc cttatgatcc
6061 tgcagaagac ataccaggcc ccctagggac accagatttc cggggcaaag tctttggcgt
6121 ggccagccaa agaaaccccg acagtacaac tagagcacat gaagcaaagg tggacacaac
6181 agctggtcgc ttcaccccaa aactaggctc attagagata tccactgaat ctagtgactt
6241 tgaccaaaac caaccaacaa gattcacccc agttggcatt ggggttgacc acgaggcaga
6301 cttccaacaa tggtccttac ccgattactc tggccagttc actcacaaca tgaacttagc
6361 cccagctgtt gctcccaact tccctggtga gcagctcctt ttcttccgct cacagttacc
6421 atcttctggt gggcgatcca atgggatttt agattgcctg gtcccccaag aatgggtcca
6481 gcacttctac caagaatcag ctcccgccca aacccaggtg gctctggtta gatatgtcaa
6541 ccctgacact ggtagagtgt tgtttgaggc caagctgcac aagttaggtt ttatgactat
6601 agctaagaat ggtgactctc caataactgt ccccccaaat ggatacttta ggtttgaatc
6661 ttgggtgaac ccattttata cacttgcccc catgggaact gggaatgggc gtagaagagt
6721 tcaataatgg ctggtgcttt tatagcagga ttagctggtg atatactcac aaatactgca
6781 gggtctctag ttaatgcagg ggctaatgct attaatcaaa aagttgattt tgaaaataat
6841 aaatacttgc aaaatgcttc cttcaatcat gataaggaga tgttaaatgc acagattgag
6901 gcaacaaaga gattacaggc tgacatgatt gctatcaaac agggggtttt gaccgctggc
6961 ggcttttccc ccactgatgc agctcgcggg gcaatcaacg cccccatgac aaaagtccta
7021 gattggaatg gaacaaggta ctgggcacca aatgccacct ctacaacttc gatgtcgggt
7081 ggcttcacaa accaggctgt gcacagaacc acgccaaatt ttaaaatgaa ccaggcccct
7141 agatccacat ccagcagtgg gtcttcagtg aggtcactct caacccaagt cactagtctg
7201 agctcacact cgtctgggtc gtctcgatcc agcgggccta cagttgctag ctcattacca
7261 tcctctaaca ggactaggga ctgggtcaat cagcaaaatt tcaatttgga accacacttg
7321 cctgggtcac ttaggacggc ttttgtcact ccaccatcta gtacagcctc tagttcaggc
7381 actgtctcaa ccgtgcccaa aaatgttttg gactcctgga catctgcgtt taacacgcgc
7441 agacagccgc tattcgcaca ccttcgtaga aggggggagt caaatgttta g
//