Typing tool
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Typing tool
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Complete norovirus genomes
| MT158851 | GII.2 | |
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| GII.P16 |
ORF1: 1..5100
ORF2: 5081..6709
ORF3: 6709..7488
LOCUS MT158851 7488 bp RNA linear VRL 08-APR-2021
DEFINITION Norovirus GII isolate 8-GII.P16-GII.2 nonstructural polyprotein
(ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MT158851
VERSION MT158851.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7488)
AUTHORS Li,Q., Yao,P., Jiang,J., Mao,X., Wang,F. and Zhang,W.
TITLE Molecular identification of emergent GII.Pe-GII.4 and
GII.P17-GII.17 norovirus genotypes, China, 2019
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7488)
AUTHORS Li,Q., Yao,P., Jiang,J., Mao,X., Wang,F. and Zhang,W.
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2020) Performance management office, Shanghai
Public Health Clinical Center, No. 2901 Caolang Road, Shanghai
201508, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7488
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="8-GII.P16-GII.2"
/isolation_source="Anal swab"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="15-Mar-2019"
/note="genotype: GII.P16-GII.2"
gene 1..5100
/gene="ORF1"
CDS 1..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QII22996.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSFTLKKALGARP
KQPAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ
PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA
ISMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI
GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL
STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVLMISGKPGIGKTHLAR
EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD
TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPDV
EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA
RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK
TMEELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKSTSVQTNNELAGALHH
LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE
APKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVAGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKSGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFW
NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL
STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPNETMIPHSQRPIQLMALLGEASLHGPFFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide 1..996
/gene="ORF1"
/product="p48"
mat_peptide 997..2094
/gene="ORF1"
/product="NTPase"
mat_peptide 2095..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6709
/gene="ORF2"
CDS 5081..6709
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QII22997.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6709..7488
/gene="ORF3"
CDS 6709..7488
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QII22998.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLIAGGFSPTDAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 atgaagatgg cgtctaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaaa
61 gaaaaatctt caggtgaagg cttattcaca aatatgtctt tcaccttaaa gaaagccctc
121 ggggctaggc ccaaacagcc tgccccgaga gacaaaccac aaaagccccc aagaccacca
181 actcccgagt tggtcaagag gataccccct cctccaccta atggcgaaga agaagaagaa
241 ccggtcatta gatatgaggt taagagtggg atctctggcc tacctgagct cacaacagtc
301 ccccaaccgg acgtggccaa cacagcattc agtgttccac cactgagctt gagagaaaac
361 agggaggcca aggagccgct aacaggggca atactagaga tgtgggatgg agagatatac
421 cactatggcc tgtacgtgga gaaaggctta gtgttgggtg tgcacaaacc acctgcagcc
481 ataagcatgg caagagtgga gcttacgccg ttgtcattgt attggcgtgt ggtgtacact
541 ccccaatacc tcatctcccc tgaaaccctc aggaggctca acggagaggc attcccttac
601 accgcttttg acaacaactg ctatgccttt tgctgctggg tattagacct caatgactca
661 tggcttagca ggagaatggt gcaaagaaca acgggcttct tcagacctta tcaagagtgg
721 aacagaaaac ccctgcctac catggacgac tccaaaatta agaaggtagc aaatatattc
781 ctatgttcat tgtccacatt gttcaccaga cccataaaag atctcatagg aaaaattaaa
841 ccattgaaca tattgaatat cctggcaacg tgtgactgga cttttgccgg aatagtggag
901 tctctgatat tacttgctga actcttcgga gttttctgga cacccccaga tgtgtctgct
961 atgatcgctc ccttactcgg ggactacgag ttgcaagggc cagaagacct cgccgttgaa
1021 ctcgtacctg tggtaatggg ggggattggt ttggtgttgg gattcactaa agagaaaatt
1081 ggcaaaatgt tgtcctcagc agcatcaaca ctcagggctt gcaaagatct tggtgcctat
1141 ggcttagaga tactcaaatt ggtcatgaag tggttcttcc caaagaaaga ggaggccaat
1201 gagctagcta tggtgagggc catagaggac gctgtactag atcttgaggc aatagaaaat
1261 aaccacatga caaccctgtt gaaagacaaa gatagcttag caacatacat gaaaacacta
1321 gacatggagg aggagaaagc caggaggttg tccacaaaat ctgcatcccc tgacatagtt
1381 gggacaatca acgccctgct ggctcgaata gcagcggcca ggtcattagt ccacagggcc
1441 aaggaagagt tatctagcag gatgaggcca gtagttctta tgatatctgg caaaccagga
1501 ataggcaaaa ctcatctggc cagggaggtg gcaagaaagg tggcatccac tctcacaggg
1561 gatcaaagag tcggactcat accacgaaac ggtgtggacc attgggatgc gtacaaaggt
1621 gagagagtcg tgctgtggga cgactatggc atgagtaacc ctattcatga tgctcttcgc
1681 atacaagaat tggctgatac gtgtcccctt accttaaatt gtgacagaat tgaaaataag
1741 ggaaaagttt ttgacagtga agtcataata attacaacaa accttgccaa tccagcccca
1801 cttgattatg tcaactttga ggcctgttct aggagaatcg atttcctggt gtatgctgag
1861 gcaccagatg tagaaaaggc aaaacgggac tttcctggtc agccagatat gtggaaagac
1921 gccttcaagc cggacttttc acatatcaag ttacagcttg caccccaggg cggctttgac
1981 aagaatggca acaccccaca tgggaaagga gtgatgaaga ccctcactac cggttctctg
2041 attgcccgtg catcaggcct actgcatgag aggatggatg aatttgaact ccaaggtccc
2101 acaatcacca ccttcaattt cgaccggaac agaatcacgg cattcagaca attggccgca
2161 gaaaacaagt atggactggt ggataccatg aaagttggca atcaattaaa aggagtgaaa
2221 accatggaag aactcaaaca agcaatcagg aatgtgacca tcaagaggtg tcagatcatc
2281 tacggtggtt ccacgtatga ccttgaatct gatggcaagg gcaaagtttt ggtggaaaag
2341 gtcaagagca cctctgtaca gaccaataac gagttggctg gggccctgca ccatctcaaa
2401 catgcccgaa tcaggtatta tgtcaaatgt gtgcaagaag cagtctattc catcatacaa
2461 attgccggcg ctgcgtttgt caccacgcgc attgcacgcc gcatgaatat acaagaactc
2521 tggtcgaagc cacaactaga tcaaaatgaa tcagagacta aggaagaggc ccccaagtca
2581 gaagatgacg agttcatcat atcttctaag gacatcaagg aggaaggaaa gaagggcaaa
2641 aacaaaactg gccgtggcaa gaaacacact gcattctcca gcaagggctt gagcgatgag
2701 gagtatgacg agtacaagag gataagagaa gagagaaatg ggaagtactc tatagaggag
2761 tatcttcaag acagagacag gtactatgag gagcttgcca ttgccaaggc cacggaagaa
2821 gacttctgtg aagaggagga gatcaaaatc cgtcagagaa ttttccgtcc caccaggaaa
2881 caaagaaagg aagagagggc tacattaggg ctagtaacag gctcagaaat tagaaaaaga
2941 aaccctgatg acttcaaacc caaagggaag ctgtgggccg atgacaacag gagtgttgac
3001 tacaatgaga aactggactt tgaggccccc ccaagcatat ggtctaggat tgtgagcttt
3061 ggttctggct ggggcttctg ggtgtcacca agccttttca taacatcaac tcatgtaatc
3121 cccgcaggca taacagaagc atttggagtc tccatcaaac aaattcagat ccacaaatca
3181 ggcgagtttt gccgatttag attcccaaaa ccaattagac cagatgtggc aggaatgata
3241 ttggaagaag gtgcgcctga gggcaccgtg gcaactgtgc tcatcaaacg ccccaccgga
3301 gagcttatgc ctcttgcagc cagaatggga acacacgcaa ccatgaaaat tcaaggccgc
3361 atggttggcg gacagatggg tatgttgctc actggatcaa atgctaaagg aatggacttg
3421 ggaacaactc ctggtgactg tggctgccct tacatctata aaaggggtaa tgactatata
3481 gtcattgggg tgcacactgc agcagcccgt ggtggaaaca ctgtcatctg tgccacacag
3541 ggaagtgagg gtgaggcaac tcttgagggt ggagatgaca aaggaacata ctgtggggca
3601 cccattctag gccctggggg tgcaccaaaa ttgagcacca aaaccaaatt ttggaggtca
3661 tcgaacacgc cccttccacc agggacatat gagcctgcct acctcggtgg ccgtgatccg
3721 cgtgttaaga gtgggccctc cctgcagcag gtaatgagag accagttgaa gccgttcact
3781 gaacccaggg gcaaaccccc aagaccaagt gtattggaag cagccaaaca aaccatcatc
3841 aatgtcctcg aacaaaccct ggaccctcca caaaaatgga catacgcaca ggcgtgtgcc
3901 tcacttgaca aaaccacctc cagcgggcac ccccatcacg tccgaaagaa tgaattctgg
3961 aatggtgaga ccttcactgg taaactggca gatcaagcat caaaagcaaa cctaatgttt
4021 gaggaaggga aacacatgac accagtatac acagcagcac tcaaggacga gctagtcaag
4081 actgagaaaa tctatggaaa gatcaagaag agactgctct ggggctctga cttgtccacc
4141 atgatccggt gcgctaggtc atttggtggg cttatggacg agatgaaggc acactgcata
4201 tcactcccag ttcgagttgg catgaatatg aatgaagatg gcccaataat atttgagaaa
4261 cattccagat acaaatatca ctatgatgca gactactctc gttgggattc aacacaacag
4321 agggcagtac tagcggcagc cttggaaatc atggtcagat tctctgcaga accacaattg
4381 gcacaaatag tcgctgagga tctgctggcc cctagtgtag tagatgtagg agactttaaa
4441 attacaataa atgaagggct cccttctggt gtgccatgca cttctcaatg gaactccatc
4501 gcacactggt tgctaactct ctgtgccttg tctgaagtca ccaaactgtc ccctgacatt
4561 atacaggcaa attccatgtt ctcattttac ggtgatgacg agattgtcag caccgacata
4621 aaattggacc ctgaacagtt aaccgccaaa ttgaaggagt acggcctgaa accaacccgc
4681 ccagacaaaa ccgagggacc cttgattatc agtgaagatt tgaacggtct cactttcctc
4741 cgaaggacgg tgactcgtga cccagctggc tggtttggaa aactggacca aagctcaatt
4801 ttgaggcaga tgtactggac tagaggacca aatcatgaag atcccaatga aactatgata
4861 ccccattctc aaagacccat acagctcatg gcactgcttg gtgaagcctc tcttcacgga
4921 ccctttttct acagtaaaat cagtaaactg gtcataactg aactcaaaga aggtgggatg
4981 gacttttacg tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc
5041 acgtgggagg gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgaatga
5101 cgccgctcca tctactgatg gtgcagccgg cctcgtgcca gaaagtaaca atgaggtcat
5161 ggctcttgaa cccgtggctg gtgccgcctt ggcagccccg gtcaccggtc aaacaaatat
5221 tatagaccct tggattagag caaatttcgt ccaggccccc aatggtgagt tcacagtctc
5281 tccccgaaat gcccctggtg aagtgctact gagtctagag ttgggtccag aattaaatcc
5341 ttatctggca catttagcaa gaatgtacaa tgggtatgcc ggtgggatgg aggtgcaggt
5401 catgttggct gggaacgcgt tcacagccgg caagttggtc ttcgccgccg tgccacccca
5461 cttcccggtt gaaaacctta gcccacagca aatcaccatg ttccctcatg tgatcataga
5521 tgtgagaacc ttggaacctg ttttattacc actccctgat gttaggaaca acttcttcca
5581 ttataaccag aaagatgatc ccaagatgag aattgtggct atgctttata cccccctcag
5641 gtctaatggt tcaggtgatg atgtgtttac agtctcctgt agagtgttga ctagaccttc
5701 ccctgacttt gacttcacat acctggtgcc accaacagtg gagtctaaaa caaagccatt
5761 caccctccca atcctcacac ttggggagct ttccaattct aggttcccag tgtccataga
5821 ccagatgtac accagcccta atgagattat atcagtgcag tgtcaaaacg gtaggtgcac
5881 actggacggg gagctccaag ggacaacaca actccaagtc agtggcattt gtgctttcaa
5941 aggtgaagtg accgcccact tgcatgacaa tgatcaccta tataatgtca ccatcacaaa
6001 cctgaatggg tccccttttg atccctctga ggatatccct gcccctctag gtgtgcctga
6061 cttccaggga agggtttttg gtatcatctc ccaaagagat aaacacaata gtcctgggca
6121 taatgaacca gcaaacaggg gacacgacgc tgtggttcct acttacacag cacagtacac
6181 tccaaaactt ggacaaattc aaattggcac atggcaaact gacgacctta cagtcaacca
6241 accagtcaaa ttcaccccag ttggactcaa tgacactgaa cactttaacc aatgggtggt
6301 ccctaggtat gctggtgccc taaacctcaa tacaaacctt gccccttctg ttgccccagt
6361 gtttccagga gagcgcctgc tcttctttag atcatacatc cccctcaagg gcggttatgg
6421 aaacccagcc attgattgcc tactaccaca agagtgggtg caacacttct atcaggaagc
6481 agccccttca atgagtgagg tggccctcgt cagatacatc aacccggaca ctggtcgggc
6541 actgtttgag gccaagctcc acagagctgg tttcatgaca gtctcgagca acaccagtgc
6601 cccggtggtt gtgcctgcca acgggtactt cagatttgat tcttgggtga accaatttta
6661 ttctctcgcc cccatgggaa ctgggaatgg gcgtagaagg gttcagtaat ggctggagct
6721 tttgtagctg gtcttgcagg ggacgtgctc agcaatgggc ttagttcatt aatcaatgca
6781 ggtgctaatg caataaatca gagggcagaa tttgatttta atcagaaatt gcagcaaaat
6841 tcttttaatc atgataagga gatgttgcag gctcagattc aggcaactaa gcagctgcag
6901 gcagacatga tggctataaa acaaggggtc ttgatcgctg gcggcttttc ccctactgat
6961 gcagccagag gtgctgtgaa cgcgcccatg acacaggcgc tggattggaa tggcacaagg
7021 tactgggcac caaactccat gaggaccaca tcttattctg ggaaattcac atcaaccgcc
7081 ccagtgaggc aggctgactt ccagcacacc caaagccggc cttcgagtgg atcctctgtg
7141 tcttcctttg ccacccagtc ttcaaggcca actctgacca caaccactgg ttcctcacat
7201 ggcacagcct catcaaattc aactcgcagc acaagtctct cccaatcaac ggtctccaga
7261 gctacatcta ggactggtga gtgggttaga gatcaaaata gaaatttgga accctacatg
7321 catggtgcct tacagacggc ctttgtcacc ccaccttcca gcagggcatc tgacgggaca
7381 gtctcaaccg tccctaaagg tgttttggac tcctggacac ctgcgtttaa cacccgcagg
7441 cagccgcttt ttgcacacct ccgtaagagg ggggagtcac aagcttag
//