Typing tool
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Typing tool
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Complete norovirus genomes
| MT158850 | GII.6 | |
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| GII.P7 |
ORF1: 1..5094
ORF2: 5075..6727
ORF3: 6727..7506
LOCUS MT158850 7506 bp RNA linear VRL 08-APR-2021
DEFINITION Norovirus GII isolate 3-GII.P7-GII.6 nonstructural polyprotein
(ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MT158850
VERSION MT158850.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7506)
AUTHORS Li,Q., Yao,P., Jiang,J., Mao,X., Wang,F. and Zhang,W.
TITLE Molecular identification of emergent GII.Pe-GII.4 and
GII.P17-GII.17 norovirus genotypes, China, 2019
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7506)
AUTHORS Li,Q., Yao,P., Jiang,J., Mao,X., Wang,F. and Zhang,W.
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2020) Performance management office, Shanghai
Public Health Clinical Center, No. 2901 Caolang Road, Shanghai
201508, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7506
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="3-GII.P7-GII.6"
/isolation_source="Anal swab"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="02-Mar-2019"
/note="genotype: GII.P7-GII.6"
gene 1..5094
/gene="ORF1"
CDS 1..5094
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QII22993.1"
/translation="MKMASNDATAALGSQNSVNDSINTTPSNKEEAGAFSNIKVGFRK
MLGAVPKGTKAPSSDQHCPTVKIGPKTLTVPPEPPNGEDTVQFDAKSETVIGIPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKNIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESP
EIEKVKRDFPGQPDMWKDYFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERKDEFQLQGDALQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDHTSHIANEVGSAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEASEPGK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGLKELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 1..1002
/gene="ORF1"
/product="p48"
mat_peptide 1003..2100
/gene="ORF1"
/product="NTPase"
mat_peptide 2101..2619
/gene="ORF1"
/product="p22"
mat_peptide 2620..3018
/gene="ORF1"
/product="VPg"
mat_peptide 3019..3561
/gene="ORF1"
/product="Pro"
mat_peptide 3562..5091
/gene="ORF1"
/product="RdRp"
gene 5075..6727
/gene="ORF2"
CDS 5075..6727
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QII22994.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQNARAADLTDSPQRARNHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESPDF
TTNQPIRFTPVGMGDNNWRQWELPDYSGSLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 6727..7506
/gene="ORF3"
CDS 6727..7506
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QII22995.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPLQHTAPPKSKLQSDSASVYSSPSTVSSQS
THSTVLSAGTGSSRSTPTSTATSTLSRTSDWVRGQNERLGPFMDGALQTTFVTPPSSK
ASSDGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 atgaagatgg cgtctaacga cgctaccgct gcccttggca gtcaaaactc tgtcaatgac
61 agtatcaaca ccaccccttc aaacaaagaa gaggctggtg cattctccaa catcaaagtt
121 ggatttagga aaatgctggg tgccgtaccc aagggcacta aagcacccag cagtgaccag
181 cactgtccaa cagttaagat cgggcccaaa acactaacag tcccccctga acccccaaat
241 ggtgaagaca ctgtacagtt tgacgcaaaa tcggaaactg taattgggat accggacttg
301 acaacagtgc aaaatgaaca tgaaaacacc ccatacactg tccctccact gagtgagagg
361 gaacacagac cagccactga gccacttcct ggcacaatat tggagatgtg ggatggtgaa
421 ttttaccact actctgtgta cgtcagcggc ggcaaagctc tgggggttca caaacctccg
481 gcagctataa gtctcgcgac gatagagctc acccccatat ctctatactg gaggcccgtt
541 tacaccccca actatctggt ctgtccagac acactgaaag gtctcgctgg tgaaaagttc
601 ccctacacgg ccttcagcaa caattgctac aacttctgtt gttgggtgct tgaactcaat
661 gacacgtggc ttagcagaag aagcatttct agaactaccg gcttcttcaa accgtaccag
721 tcttggaaca ggaaacctct cccaacagtt gatgatggaa agatcaaaaa ggttgccaac
781 gcgatccttt gtgcgctcgg ttcgctgttc tcaaaaccaa tcaaggatct gctaggcaag
841 ctcaaaccat tgaacttact acacctgctc gcgtcgtgtg attggacgtt tgcaggtata
901 gtggagacag tcatcttaat ggcggaactc ttcaacgtct tttggacccc gccagacgtc
961 tctaatttca tagcctccct gataggtgat tttgaattgc aggggcctga ggacttggcg
1021 gtagagcttg ttcctgtggt tatgggtggt ataggaatgg ttctcggctt cacagctgag
1081 aagataggtc gcatgctgtc gtccgctgca tcaacactgc gggcgtgtaa agacttaggg
1141 aactatgccc ttgacatact taaattggtc atgaaatggt tcttcccaaa gaaagaggag
1201 aaagccgaaa tggaaacctt aagggcgatt gaggatgccg tcctagatat ggaggccata
1261 ggtaacaacc acctcacgac cctcctcaag gataaagaca gtctcacggc ctttatgaag
1321 accttggatc tggaggaaga gaaagcaagg aagctatcca ccaaatcatc ctcaccggac
1381 atcgtcggca ctatcaatgc catactggct aggatagctg ccgctagatc cctcctgcac
1441 aaagccaaag aggaaatgtt tagcaggatt agaccggtgg ttgttatgat ctcaggcaga
1501 cctggtattg gcaagactca tatggcgaga cacctggcta aaaacatcgc caacaccatg
1561 agtggtgacc aaagagtcgg gctcgttccg cgcaacgggg ttgaccactg ggacgcttac
1621 agaggagaga gggtggtctt gtgggatgat tatggaatgg ggaaccctgt caaagatgct
1681 ttaacactac aagagctagc tgacacatgc ccagtcactc tgaactgtga caggatcgag
1741 aacaagggaa aaatgttcga cagtgatgtc atcataatca cgaccaactt agtcaaccct
1801 gcacctctcg attatgtgaa cttcgaggcg tgctctagga ggattgattt cttggtctat
1861 gcagagtcac cagaaattga gaaggttaag agagatttcc ctggtcaacc tgacatgtgg
1921 aaagactatt tcaaacaaga cttttcccat ataaagctaa ccctagcccc ccaaggcgga
1981 tttgacaaga atggtaacac cccgcatggt aagggcacca tgcgatccct cacccagggg
2041 tccctgaccg caagggttgc aggccttgtt catgagagaa aggatgagtt ccagctacaa
2101 ggggatgccc tccagacgta caactttgac accaataggg tctctgcgtt caggaaactg
2161 gctgcagaca acaagtatgg aatcatggaa acaatgagag tgggtgcagc gctcaaaaat
2221 gtcaaaactc tggaagatct gaaggtcgcc ttgagagatg tgaagttcaa tgagtgtgaa
2281 ataatttaca ggaactctaa gtaccgggtc tcttccaacg gcaagggctc tgtttctgtt
2341 gacaaagttg aggaccacac gtctcatatt gcaaatgaag tgggctcagc actcctcaga
2401 cttaggcaag caagggctag gtactatgtc agctgcttcc aagacctcgt ctacactctc
2461 atacaggttg ctggggcgtc attcgttgtc aacaggatct ctaaaaggtt ctgctgggaa
2521 aggtgggtta aaccaaccga aacccaagaa gcgagtgagc ccggaaagga agtagctcaa
2581 ggtagatggg agatagagcc caaggacaca gaaccagaag gcaagaaggg taagaacaag
2641 aaggggagag gcaagaaaca cacagccttc tccagcaaag gcctaagtga tgaagagtat
2701 gatgagttca agagaatcag agaagagagg aacggaaaat actccattga ggaatacctg
2761 caagaccggg accgctacta tgaagaagtg gcagttgccc gagcaacaga agaggacttt
2821 tgtgaagaag aagaagccaa aataagacaa agaatcttcc gcccgacaag gaagcaaagg
2881 aaagaggaaa ggggggtact tggtttagtc actggttcag atatcaggaa gaggaggcca
2941 gacgattttc aaccaaaagg caacctgtgg gcagacgaca ctaggagtgt ggactacaat
3001 gagagacttg actttgaggc tccaccaagt gtctggtcaa gaatagtccc attgggcact
3061 ggttggggct tctgggtttc atcaaacctc ctgatcacaa caacacacgt cctgcccaag
3121 gggctcaagg aactctttgg ggtcgaagtc aaacaaattc aaatccacaa gtctggagag
3181 ttctgcaggt ttaggttccc aagaccaatc aggccagatg tcacaggact cgtgctggag
3241 gaaggtgctc ctgaaggcac tgtctgttct atactcgtta agaggcctac aggtgagatg
3301 atccccctag cagtgaggat gggcacgcat gcgtccatga aaatacaggg taggaccgtc
3361 ggtggtcaga tggggatgct tctcacaggg gcaaatgcaa agaacatgga tctcggcacc
3421 ggtcctggtg actgcggttg tccttacatc tataagcgtg gcaacgacat agttgtcgcg
3481 ggtgtccaca ccgcagcagc ccgggggggc aacactgtca tttgtgccac tcaaggacaa
3541 gacggagagg cagtcctcga gggaaatgaa gaccttggca cctactgtgg tgctccaatt
3601 ctgggccctg gtaaagcgcc taaactcagc acaaaaacta aattttggcg ctcatcacca
3661 gatgccctac ctcctggtac gtatgagcct gcttatctgg ggggtaagga tcccagagtg
3721 gaaaaggggc cctccctgca gcaagttatg agagaccagc tgaaaccatt cacagaaccc
3781 aggggcaaac cacctagacc agcagtttta gaagaggcta aaaagacagt gatgaacgtt
3841 ctagaacaga ccattgatcc tgctaaacca tggacttact cacaagcatg tgcttcactg
3901 gacaagacca cttctagtgg aagcccccac catgtcagga aaaatgacca ctggaatggg
3961 gagtctttca ctggtcccct tgcggaccaa gcatccaaag ccaacctcat gtatgaacag
4021 gcaaagcatg ttcagcccgt gtacacggcc gcgctcaaag atgaacttgt taagactgat
4081 aagatctaca agaaaataaa gaagagactc ctatgggggt cagaccttgg cacgatgatc
4141 aggtgtgcca gggcttttgg cggccttatg gacagtatga aagcaagttg tatagccctt
4201 ccatgcaggg tggggatgaa catgaatgag gatggcccta tcatatttga caaacactcc
4261 aagtataggt accactatga tgctgactac tctaggtggg actcaaccca gcaaaggagc
4321 attctttccg ccgccatgga ggtgatggtg aggttctctg ctgaaccaga attggcacaa
4381 gtggtcgcag aggatctttt agcgcctagc cagctagatg ttggcgattt tgtcatctca
4441 gtccaggagg gcctaccatc aggagtccca tgtacgtcgc aatggaactc aatagcgcac
4501 tggattctaa ctctgagcgc aatggcagaa gtgtcaggtc tctcaccaga cgttgtccaa
4561 gcccactcct gtttctcatt ttatggcgac gatgagatcg tcagcactga catcaacctt
4621 gaccccatga aattgacaca gaaactcagg gagtatggtc tggtccccac ccggcctgat
4681 aagactgaag gccccctcgt tataactgaa gacctcaccg gcctgacatt cctgcgcaga
4741 tcgattgcac gggatccagc tggatggttt ggaaaattgg atcaagactc aatcctcagg
4801 cagttgtact ggacaagggg acccaatcat gaaaacccat acgagagcat ggttccccac
4861 tcccagcgag ctactcagct catggccctt cttggtgagg cttcattaca tggtccccag
4921 ttttacaaga aagttagcaa gatggtcatc aatgaaatta agagtggtgg tctggagttt
4981 tatgtgccca gacaagaggc catgtttagg tggatgagat tctctgacct cagcacatgg
5041 gagggcgatc gcaatcttgc tcccgaaggt gtgaatgaag atggcgtcga atgacgccgc
5101 tccatcaaat gatggtgctg ccaacctcgt accagaggcc aacaatgagg ttatggcact
5161 tgaaccggtg gtgggagctt caatcgcggc tcctgttgtc ggtcagcaga atataattga
5221 cccctggatt agagaaaatt ttgttcaagc accacagggc gagtttactg tttcaccaag
5281 gaactcgccc ggtgagatgc ttctaaatct tgaattgggc ccagaactca acccctattt
5341 gagtcatttg tcccgcatgt acaatgggta tgctggtggc atgcaggttc aggtggtcct
5401 agctgggaat gcgttcacag ctgggaagat catctttgcc gctgtgccac cacacttccc
5461 tgtggacaat attagtgcag ctcagataac tatgtgcccc catgtgattg ttgatgtgag
5521 acagcttgaa ccagtgcttc tacccctccc cgatataaga aacaggttct tccattacaa
5581 ccaggaaaac accccccgga tgaggctcgt ggccatgctc tacacgcctc taagggctaa
5641 ttccggagag gatgtgttca ctgtgtcctg tagggttctg actcgccccg ctccagattt
5701 tgaattcaca ttcttagttc caccaactgt tgaatcaaaa acaaaaccct ttactctacc
5761 tattttaacc cttggtgagt tgtctaattc ccgttttcct gctgctatag atatgcttta
5821 cactgatccc aatgaatcaa tagttgttca gccccaaaat ggtagatgca cccttgatgg
5881 cacgctgcag ggcacaacac aattggtccc aacacagatt tgtgccttta gaggtactct
5941 gatcagtcag aatgcgagag cggcagatct aacagattcc ccccagagag cccgcaatca
6001 cccgttgcac gtccaggtca agaacctaga tggcacacag tatgacccaa cagatgacat
6061 ccctgcagtc ctgggggcta ttgatttcaa aggtacagtg ttcggagtgg cgagtcagag
6121 agacgtctct ggaacacaag aacagggcca ttatgccacc cgggctcatg aagcacacat
6181 tgacacaact gatccaaagt atgcacctaa attaggcaca attctcatca aatctgaatc
6241 ccctgacttc accacaaatc agcccattag gttcactcca gtgggcatgg gagacaacaa
6301 ttggaggcag tgggaattgc ctgactattc tggtagtttg actctaaata tgaaccttgc
6361 ccctgctgtt tccccatctt tccctggtga acgaatcctt ttctttaggt ctatagtacc
6421 atcagctgga ggctacgggt ctggttatat agactgcctc ataccccagg aatgggtgca
6481 acatttctac caggaggcag caccttcaca atctgctgtt gcactggtta ggtatgtcaa
6541 ccccgacact ggacgtaaca tctttgaggc caagttgcac agagaagggt tcctcaccgt
6601 ggccaattct ggaaacaatc ctatcgtggt tccccctaat ggttatttta gatttgaggc
6661 ttgggttaat caattttaca cacttgcccc catgggatct ggacaggggc gtagaagagc
6721 tcagtaatgg ctggagcctt cttcgcaggg ttagcaggtg atgtcgtgtc gaacggcatc
6781 ggttccctca ttaatgcagg tgctaacgca gtcaatcaaa aggttgagta tgattttaat
6841 aagcaacttc aaatggcatc attcaaacat gataaggaga tgttacaatc acaggtgttg
6901 gcaaccaaac agctgcagca ggagatgatg aacataaagc aggggatgtt gaccgctggc
6961 ggcttttctc ctgcggatgc tgctagaggg gctgttaacg ctccaatgac aaaaatattg
7021 gactggaatg gcacaagata ttgggcacct aatagcatga aaaccacaag ctactcagga
7081 caattctcta gtagccctgt ccacaggtct cctgctcccc tccagcatac tgccccacca
7141 aaaagtaagt tgcaaagtga ttctgctagt gtgtatagct ccccttccac tgtttcttca
7201 caatcaactc attcaacagt gttgtctgca ggaactgggt cgtccagatc cacccccacg
7261 tccacagcaa cctccaccct gtctaggacc agcgactggg ttagaggaca gaatgaaagg
7321 cttggcccgt ttatggatgg tgctctccaa actacctttg tcacaccacc atcgagcaaa
7381 gcttcatcag atgggacagt ctcgaccgtg cccaaagctg ttttggactc ctggactcct
7441 atgttcaaca cgcataggca gcctctcttc gcccacttgc gtaggcgagg ggagtcacag
7501 atttag
//