Typing tool
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Typing tool
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Complete norovirus genomes
| MT089579 | GI.3 | |
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| GI.P3 |
ORF1: 5..5404
ORF2: 5388..7025
ORF3: 7025..7672
LOCUS MT089579 7762 bp RNA linear VRL 01-MAY-2020
DEFINITION Norovirus GI isolate 461-2, complete genome.
ACCESSION MT089579
VERSION MT089579.1
DBLINK BioProject: PRJNA604000
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7762)
AUTHORS Yang,Z., Williams-Hill,D., Wolfe,J., Silva,A.J., Hirneisen,K.,
Ruelle,S., Kulka,M. and Hellberg,R.S.
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2020) Molecular Virology Team/Devision of
Molecular Biology, OARSA/CFSAN/FDA, 8301 Muirkirk Rd., Laurel, MD
20708, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genonics Workbench v. 11
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7762
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="461-2"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="24-Jul-2019"
/note="genotype: GI.P3-GI.3"
gene 5..5404
/gene="ORF1"
CDS 5..5404
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QIC52025.1"
/translation="MMMASNDAIAVADVSNNNANTNNDNIGSRLMARIRGRIGPQRGE
TTTKIKDANMALDLLRRSQTPSPSRQESPPKSQRDRPPRTASEVKKVLGWDVEPEHQE
STAKAWCDLTQEEKEEIMRNNEKLFDAGGITPSTLPSTFERADPVDSPTEQQPVTWSA
SGGVDIGVNDLTTVRGPFWNMCPLPPLDARSNGPAKEPLIGDMIEFYEGHIFHYAIYI
GQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYVPNNQQRLTYDQLKELENEPWPYAS
ITNNCYEFCCRVMALDDTWLERRLVSTGKFNHPTQDWSQDTPDFHQDSKLEMVRDAVL
SAINGLVSQPFRNILSKIKPLNVLNLLSNCDWTFMGVVELIVLLAELFDVFWTPPDIS
SFIASLLPEFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQL
GQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLARTYMN
VLDNEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRPRPVVIMMC
GPPGIGKTKAAEHLAGRLANEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSKI
TEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCRR
VDFLVYCSAPEIEQMRRTHPGDANAIKDLYKRDYSHLKMELAPQGGFDSQGNTPFGKG
TMKPTTLNRLLIQATALAMERQDEFQLQGAVYNFDEDRVSAFTSLARANGLGLLSMAT
LGKRLRSVKSMEGLRNALVGYKIGECDIIWNTRVYSIKSDGSTVTIKEKQTPTSPQYQ
AISTATLALSRLRAARALAYASCLQSAVLSILQVAGSALVVSRAVKRMFGTRTEQPML
EGKHKEHNCRVHRAEAAGHGPIGHDGVIERYGLCESEQEEEGEQIFELPTANKEGKNK
GKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKIREEKSGNYSIQEYLEDRQRYEEELAE
VQAGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVSGSEIRKRKPIDWTPP
KNDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAKE
VFGEDLSNVAIHRVGEFTQFRFSKKMRPDLTGMVLEEGCPEGTVCTIMIKRDSGELLP
LAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVC
GVHAAATKSGNTVVCAIQGGDGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWK
STPQPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVE
TVTNAIEQVMDTPVAWSYSDACMSLDKTTSSGHPHHKKKNDDWNGNSFVRELGDQAAL
ANSMYELGKSMKPVYTAALKDELVKPDKVYTKIKKRLLWGADLGTVIRAARAFGPFCE
AIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKFHYDADYTAWDSTQNREIMMESFNIM
CKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWILTLCA
LSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIEFDPIRLTQILKEYGLKPTRPDKTDGP
IIIRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHEDPFETLVPHSQR
KVQLISLLGEAALHGEKFYRKIAGRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWT
GDRDLLPDYVNDDGV"
mat_peptide 5..1219
/gene="ORF1"
/product="p48"
mat_peptide 1220..2308
/gene="ORF1"
/product="NTPase"
mat_peptide 2309..2908
/gene="ORF1"
/product="p22"
mat_peptide 2909..3328
/gene="ORF1"
/product="VPg"
mat_peptide 3329..3871
/gene="ORF1"
/product="Pro"
mat_peptide 3872..5401
/gene="ORF1"
/product="RdRp"
gene 5388..7025
/gene="ORF2"
CDS 5388..7025
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QIC52026.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFAAQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPNLPLNTLSNSRVPSLIKSMMVSRDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKIRGNVFHANGGNGYNLTELDGSPYHAFESPAPIGFPDLGECDWH
MEASPTTQFDTGDVIKQINVKQESAFAPHLGTIQADGLNDVSVNTNMIAKLGWVSPVS
DGHKGDVDPWVIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIAHGINGLSVPC
TIPQEFVTHFVNEQAPIRGEAALLHYLDPDTHRNLGEFKLYPDGFMTCVPNSSGTGPQ
TLPINGVFVFVSWVSRFYQLKPVGTAGPARRLGIRRS"
gene 7025..7672
/gene="ORF3"
CDS 7025..7672
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QIC52027.1"
/translation="MAQAILGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQKN
SFIHDKEMMGLQVEASTALLQNSLGTRYNMLTKAGMTSADAARMVVGAPATRVVDWNG
TRIAAPMSTATTLRSGGFMTVPTVYRGSKNKQSVGGGFSNVNYDPSVSSSRTSQWVSS
QNSMRSTLEPFHPGALRTTWVTPPGSTSTSTISTVSTVPKFFNTERLPLFANRGK"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctat tgccgttgct gatgtcagca ataacaatgc
61 taacaccaac aatgataata ttggatcccg cctcatggcg aggatccgtg ggcgcatagg
121 cccacaacgt ggtgaaacaa ccacaaagat aaaagacgcc aatatggcgc ttgatctgct
181 acgccggtca caaacaccct ccccatcccg gcaagagagc cctcctaaga gccaaaggga
241 ccgcccccct cggactgctt ctgaggtgaa gaaagtattg gggtgggatg ttgaaccaga
301 acaccaggaa agcacggcca aggcatggtg tgacctcacg caggaagaga aggaggagat
361 aatgcgcaat aatgaaaagc tcttcgatgc tgggggaatc actccatcaa ctttgcccag
421 cacgtttgaa agggccgacc cagttgatag tcccactgaa cagcaacctg taacatggtc
481 tgctagtggc ggggttgata ttggtgtcaa tgacttgacc actgtccgcg gcccattttg
541 gaatatgtgc cccctcccac cattggatgc tcggagtaat ggccccgcca aggagcccct
601 cataggagac atgatagagt tctatgaggg tcatatattc cattatgcca tctatattgg
661 gcaaggtaag accattggag ttcactcacc gcaagcagct ttctccatac caaggataac
721 catccatccc ctggtagcct ggtggcgtgt gtgctacgtt ccaaataacc agcagcgcct
781 cacttatgac caactgaaag aattggagaa tgagccatgg ccctatgctt ccattacaaa
841 caattgttac gagttctgct gcagggtgat ggcacttgac gacacatggc ttgagaggag
901 attggtcagc actggaaaat tcaaccaccc cacacaagac tggtcacagg ataccccgga
961 ttttcaccaa gattcgaaac ttgagatggt gagagatgca gtgctatcag ctattaatgg
1021 ccttgtgtca caacccttta gaaacatctt gtcaaagatc aaaccattaa atgttcttaa
1081 tctcttgtca aactgtgatt ggaccttcat gggggttgtg gaactaatcg tgctcctagc
1141 agagctgttt gatgtgttct ggaccccacc agacatttca agtttcattg cctcactact
1201 acctgaattt cacctgcagg gtccagaaga cctagctagg gacttggtcc ccctcatcct
1261 aggaggcata ggtttggcta ttggctttac aagagacaaa atcacgaaag tgatgaagag
1321 tgccgtcgat gggctgagat cggcgacaca gcttgggcag tacggactgg aaatattctc
1381 aatcatcaag aagtatttct ttggtgggga ccaaacggaa aagaccttgc ggggtattga
1441 ggatgcagtg atagacatgg aggtattatc tagcaccaat gtgacacaac tggttaaaga
1501 caagaaattg gccagaacct acatgaatgt gctagataat gaagaggaaa aagcaaggaa
1561 actctcagtc cgtagtgctg atccacacat agtgacctca gtcaacaatc tgatatcacg
1621 gatatctatg gcaagatcag ccttggccaa agcccaggct gagatgacat ctcgcccacg
1681 ccctgtggtc ataatgatgt gtggcccccc cggcattgga aaaaccaagg ccgctgaaca
1741 tctggctggc cgattggcga acgagattag accaggaggt aaggttggac ttgtgcctcg
1801 ggagtctata gatcattggg acggatatca tggagaggat gtcctactat gggacgacta
1861 tggcatgtca aagataacag aggactgtaa caagctacaa gccatagctg acactgcacc
1921 cctatcactt aattgtgaca ggatagagaa caaaggtatg caattctcct cagatgcaat
1981 aattataacc accaatgccc ccggcccagc accggtggac tttgtcaacc taggccctgt
2041 gtgcaggcga gtggactttt tagtttactg ttctgccccc gaaattgaac aaatgagaag
2101 gacccaccct ggtgatgcca atgccatcaa agacctatac aaaagggact attcacactt
2161 aaaaatggag ttggccccac aaggtggttt tgatagtcag ggtaacacac catttgggaa
2221 gggcaccatg aaacccacga ccctcaacag gctactcatt caggcaacag cattagctat
2281 ggagcggcaa gatgagttcc agctccaagg ggctgtctac aattttgatg aagatagggt
2341 gtccgccttc acaagcctgg ctcgagccaa cggcctgggg ctcttaagca tggcgacatt
2401 gggaaagagg ctcagaagtg tcaagtctat ggagggcctg cgcaatgcat tggtgggtta
2461 caaaatagga gagtgtgata taatctggaa cactagagtg tattcaatta aaagtgatgg
2521 tagtactgtc acaatcaagg aaaaacaaac cccaacttca cctcaatatc aggccattag
2581 cacagccact cttgcactct ctagattgcg ggccgctaga gctctcgcgt acgcctcctg
2641 cctgcagagt gcagtgctgt caatacttca agtagctggc tctgccctgg tggtgagcag
2701 agccgttaag cgcatgtttg gcactcgcac tgaacaacct atgttggaag gcaagcacaa
2761 agaacataac tgcagagtgc accgcgcaga ggcagctggc catggtccta ttggacacga
2821 tggagtcatc gaacgctatg gcctttgtga gagtgagcaa gaagaagaag gcgagcaaat
2881 ttttgagtta cccactgcca ataaagaagg taaaaacaag ggcaagacca aaaagggccg
2941 tggacgaaaa tccaatttta acgctttctc aagacgaggc ctcagtgatg aagagtatga
3001 agaatacaag aagatcagag aagaaaagag tggtaattac agcatccagg agtaccttga
3061 ggaccgccaa cgatatgagg aagaacttgc tgaagtgcag gctggtggag atggtggaat
3121 tggtgagact gaagcagaga ttcgccatcg ggtcttctat aaatcaaaat ctggtatgag
3181 aaagcaacgc caagaagaac ggcgtcagtt gggcctcgtt agcggttctg agattcgcaa
3241 acgcaagccc atagactgga ccccccctaa gaatgactgg tcagaagaca ccaggactgt
3301 caattatgat gaacacatta gctttgaagc ccctccctca atttggagta gggtggtaaa
3361 gtttggcagt ggttggggtt tttgggtgag ctcaacagtg ttcataacca caacccatgt
3421 tataccacct ggggctaaag aagtctttgg tgaagacctc agtaatgtgg ccatccatag
3481 agttggtgag tttacccagt tccgtttctc caaaaagatg agacctgacc tcactggtat
3541 ggtcttagaa gaaggttgcc cagagggaac agtgtgtacc ataatgatta agagagattc
3601 tggtgagttg ctgccgctcg ccgttcgaat gggggcagtg gcatcaatga agatccaagg
3661 caaacttatg catgggcaat caggaatgtt actcaccggt gctaatgcca agggcatgga
3721 ccttggaact atacccggtg attgtggggc accctatgtc cacaagaggg gaaacgactg
3781 ggtggtctgt ggagtacatg cagccgccac aaaatcaggc aacactgtgg tgtgcgccat
3841 acagggtggc gatggtgaag ccactctgga gggtggcggt caaaacaagg gccactatgc
3901 agggcatccg atactaaggt atgggaatgg cccttcgcta tcaaccaaaa caaaattttg
3961 gaagtcaacc ccccagcctt tgccccctgg tacatatgag ccagcttacc ttggaggcag
4021 agatcccaga gttgaggggg gcccatcctt acaacaggtg ttaagggacc agttaaagcc
4081 atttgccgag ccccgtggca gattgcccga agcaggcttg ttggaagctg cagttgagac
4141 ggtcaccaat gccattgaac aggtcatgga cacaccggtg gcatggagct acagcgatgc
4201 ttgcatgtcc ctggataaga caaccagttc cggccatccc catcacaaga agaaaaatga
4261 tgactggaat gggaattcat ttgtgagaga attgggcgac caggcggcgc ttgctaacag
4321 catgtacgag cttggtaagt ccatgaaacc agtgtataca gcagccctaa aggatgagct
4381 ggtcaaacca gacaaggtgt acacaaaaat caaaaagaga ctgctttggg gcgcggacct
4441 tggtaccgtc atccgcgctg ccagagcatt tggaccattt tgtgaagcca taaaacccca
4501 tgtaattaag ctgcctatca aggtgggtat gaatgccata gaggacggcc ctttgattta
4561 tgcagagcac tccaaatata aatttcatta tgatgctgac tacacagctt gggattcaac
4621 acaaaataga gaaatcatga tggaatcttt caacattatg tgtaagctca cagccaatcc
4681 ctcccttgcc gcagtggtgg cgcaggatct actctcccca tctgaaatgg atgttggtga
4741 ttatgtgatc agtgtcaaag atggtttgcc atcaggcttt ccgtgcacct cacaggtgaa
4801 cagtatcaac cattggattc taaccctgtg cgctctgtca gaagtcactg gcttgtcccc
4861 agatgtgata cagtcacaat cctacttctc attttatggt gatgatgaaa tagtctcaac
4921 agacatagaa tttgacccaa ttaggttgac acaaatactg aaggaatatg gtctgaagcc
4981 tacaagacct gacaaaactg atggcccaat tattatcaga cagcaggttg atggtctggt
5041 ctttctccgg cgcaccattt ctaaggatgc cattggatac cagggacgac tcgaccgtaa
5101 ctctattgaa agacaactct ggtggactcg cgggccaaat catgaggatc catttgagac
5161 actggttcca cactcacaga gaaaggtcca attaatatcc ttgctgggtg aagcagcact
5221 ccacggtgaa aaattctaca gaaagatagc tggtagagtc attcaagaag tcaaagaggg
5281 agggcttgaa atctacattc ctggttggca ggccatgttc cgctggatgc gattccatga
5341 tctaagtttg tggacaggag accgcgatct cctgcccgat tatgtaaatg atgatggcgt
5401 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggccagctg gtaccagagg
5461 caaatacagc tgagcctata tcaatggagc ccgtagctgg ggcagcgaca gctgccgcaa
5521 ctgctggcca agttaatatg attgacccct ggataatgaa taattatgta caagcccctc
5581 aaggtgaatt taccatatcg cccaacaata ctccgggtga tattttgttt gatttacaat
5641 tgggccccca ccttaacccc tttctgtctc atttggccca aatgtacaat ggctgggttg
5701 gcaatatgaa agtgaaggtt ctattggctg gtaatgcctt cacggctggt aaaataatta
5761 ttagttgcat accccctggc tttgctgcac aaaatatttc tatcgcccag gctactatgt
5821 ttccccatgt catagctgat gttagggttt tggaacccat tgaggtgcca ttggaagatg
5881 tgaggaatgt gctctttcac aacaatgata acacaccaac tatgcggttg gtgtgcatgc
5941 tctacacccc cttgcgggcc agtggtagct cgtctggaac tgaccccttt gtgattgctg
6001 ggcgtgtctt gacatgcccg agtcctgatt ttagtttctt gtttttggtc ccccccaatg
6061 tagagcaaaa gaccaaacct tttagtgtcc caaaccttcc attaaacact ctttcaaatt
6121 cgagagtccc ttctctaatc aagtcaatga tggtgtccag ggaccatggg cagatggttc
6181 agtttcaaaa tggcagggtc accctggatg ggcagttgca aggcaccaca ccaacgtcag
6241 ctagtcagct gtgcaaaatc aggggcaatg ttttccatgc caatggtggg aatgggtaca
6301 acctaacaga actggatggg agcccatacc atgcatttga gagccccgca ccaatagggt
6361 ttccagatct aggtgagtgt gattggcaca tggaggcttc tcctactacc caatttgata
6421 ctggagatgt cataaaacaa attaatgtca aacaagagtc agcatttgcc ccccaccttg
6481 gcactataca ggcagatggc ctgaatgatg tgagtgtcaa caccaacatg atagctaaat
6541 taggatgggt gtcacccgtc agtgatggac acaaaggtga tgttgacccg tgggtcatcc
6601 cacgctatgg ttcaactctg actgaggccg cccagttagc ccccccaata tatcccccag
6661 gcttcggtga ggccattgtg tttttcatgt cagattttcc tattgcccat ggcatcaatg
6721 gcttgagtgt gccttgcacc ataccccaag aatttgtcac tcactttgtc aacgaacagg
6781 cccctattag aggggaagca gccttgctac attatctgga ccctgatact catagaaatc
6841 ttggtgagtt taaattatac cctgatggct tcatgacatg tgtgcctaat tctagtggca
6901 ctggtccaca aactcttcca atcaatggtg tttttgtctt tgtgtcctgg gtttctagat
6961 tttatcaatt aaagcctgtg ggaacagccg gcccggctcg taggcttggg attaggagat
7021 cataatggct caagccatac ttggagccat agcagcaaca gcagccggta gtgctgttgg
7081 tgctggtata caagctggga ccgaagctgc cctacagcat caaagatttc agcaagattt
7141 gaccttacaa aagaattcct ttattcatga taaagagatg atgggcctac aggtagaggc
7201 ttcaactgca ctcctccaaa acagcttggg tacaaggtac aacatgttga ccaaggcagg
7261 gatgacatcc gcagacgcgg cacgtatggt agtgggggca cccgctactc gtgtcgttga
7321 ctggaacggt actaggatcg ccgcacccat gtcaactgcg acgacactta ggtctggtgg
7381 tttcatgacc gtaccaactg tttatagggg tagtaagaat aaacaatcag ttggtggtgg
7441 tttttctaat gtaaattatg atccctcagt ctcctcttct cgcacttctc aatgggtctc
7501 ttctcaaaat tcaatgcgtt ccactttgga accatttcat ccaggtgctt taaggactac
7561 atgggtcacc ccacctgggt caacctctac ttctacaatt tccacagttt ctactgtgcc
7621 aaaattcttc aatacagaaa ggttaccctt attcgcaaat aggggtaaat gatttttgta
7681 atatgaatta gtgggcatca tattcaattt ggaatcaatt agatatttag attggcagat
7741 gatgttaaaa aaaaaaaaaa cg
//