Typing tool
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Typing tool
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Complete norovirus genomes
| MT008457 | GI.3 | |
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| GI.P10 |
ORF1: 1..5310
ORF2: 5294..6928
ORF3: 6928..7572
LOCUS MT008457 7573 bp RNA linear VRL 15-JUL-2020
DEFINITION Norovirus GI isolate SCD1054_2 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MT008457
VERSION MT008457.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7573)
AUTHORS Zhang,Z., Wang,D., Liu,D., Zhang,Z. and Wu,Q.
TITLE Whole Genome Analysis for Co-Infected Different Genotypes of Human
Norovirus
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7573)
AUTHORS Zhang,Z., Wang,D., Liu,D., Zhang,Z. and Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (28-JAN-2020) School of Agriculture & Biology, Shanghai
Jiao Tong University, 800 Dongchuan Rd. Minhang Dist, Shanghai
200240, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC genome workbench v. 12
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7573
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="SCD1054_2"
/isolation_source="asal swab"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="China: Shanghai"
/collection_date="18-Feb-2018"
/note="genotype: GI.3[P10]"
gene 1..5310
/gene="ORF1"
CDS 1..5310
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QHR93635.1"
/translation="MARLRGHLGPQRGETTTKIKDANMALDLLRRSQTPSPTRHEHPP
KDQRDRPPRTVMEVKRSMGWDDEPEQKESTVRAWCDLTKEEKEEIMRNNERLFDAGGV
TPSTIPSTFERDSSSDTVDEHQTVSWSATNGVDIGVGELTTVRGPYWNLCPLPPLDTR
NNGPAKEPLIGDMIEFYEGHIFHYAIYIGQGKTIGVHSPQAAFSIPRITIHPLVAWWR
ICYVPTNQQRLTYDQLKELENEPWPYASITNNCYEFCCRVMALDDTWLQRKLVTAGKF
NHPTQEWSQDTPDFHQDSKLEMVRDAVLSAINGLVSQPFKNILSKIKPLNLINLLSNC
DWTFMGVVELIVLMAELFDVFWTPPDISSFIASLLPEIHLQGPEDLAKDLVPLILGGI
GLAIGFTRDKVTKVMKSAVDGLRSATQLGQYGLEVFSIIKKYFFGGDQTERTLRGIED
AVIDMEVLSSTNVTQLVRDKKLAKAYMNVLDSEEEKARKLSVRNADPHIVTSVNNLIS
RISMARSALAKAQAEMTSRIRPVVIMMCGPPGIGKTKAAEHLANRLANEIRPGGKVGL
VPRESIDHWDGYHGEEVLLWDDYGMSKITEDCNKLQAIADTAPLSLNCDRIENKGMQF
VSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEVEQMRRAHPGDTNAIKDLY
KKDFSHLKMEIAPQGGFDNQGNTPFGKGTMKTTTLNRLLIQATALTMERQDEFQLQGA
IYNFDEDRVAAFTSMARANGLGLINMATLGKKLRSVKTMEGMRNALVGYKIEECDIIW
NTRTYSIKSDGKTVTVKEKQSPSSAQHQAVCTATLALSRLRAARALAYASCFQSAVLS
VLQMAGSAVVVSRAVKRMFGTRTDQPALEGGHKEHNCRVHRAEAAGRGPIGHDGVIER
YGLCESEQEDGDEQTLELPTANKEGKNKGKTKKGRGRKSNFSAFSRRGLSDEEYEEYK
KIREEKSGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKAGMRK
QRQEERRQLGLVSGSEIRKRKPIDWTPPKNDWSEDTRTVNYDEHISFEAPPSIWSRVV
KFGSGWGFWVSSTVFITTTHVIPPGCKEVFGEDLKNVAIHRVGEFTQFRFSKKMRPDL
SGMVLEEGCPEGTVCTIMVKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTGAN
AKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGNTVVCAIQGGEGEATLEGGS
QNKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLPPGTYEPAYLGGRDPRVEGGPSLQ
QVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNAIEQVMDTPVAWSFNDACMSLDKTTS
SGYPHHKRKNDDWNGTAFVRELGDQAAHANNMFELGKSMKPVYTAALKDELVKPDKVY
NKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEHAK
YKHHFDADYTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVI
SVKDGLPSGFPCTSQVNSINHWILTLCALSEVTGLSPDVLQSQSYFSFYGDDEIVSTD
VEFDPIKLTQVLKEYGLKPTRPDKSDGPIVVKQQVDGLVFLRRTISKDAIGYQGRLDR
NSIERQLWWTRGPNHDDPFETLVPHPQRKVQLISLLGEAALHGEKFYRKIASRVIQEV
KEGGLEIYIPGWQAMFRWMRFHDLSMWTGDRDLLPDYVNDDGV"
mat_peptide 1..1125
/gene="ORF1"
/product="p48"
mat_peptide 1126..2214
/gene="ORF1"
/product="NTPase"
mat_peptide 2215..2814
/gene="ORF1"
/product="p22"
mat_peptide 2815..3234
/gene="ORF1"
/product="VPg"
mat_peptide 3235..3777
/gene="ORF1"
/product="Pro"
mat_peptide 3778..5307
/gene="ORF1"
/product="RdRp"
gene 5294..6928
/gene="ORF2"
CDS 5294..6928
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QHR93636.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMRVKVLLAGNAFTAGKIIISCIPPGFASQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNSPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPNLPLNTLSNSRVPSLINAMMISRDHGQMVQFQNGRVTLDGQ
LQGTTPTSLSQLCKIRGKVFLASGGNGLNLTELDGSAYHAFESPAPIGFPDIGDCDWH
MNATTTSNFTGSNDEHQILVKQESTFAPHLGHVQADHLPEVANTDLMVSLSWISPVSD
QHRRDVDPWVIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPVVSGVNGMRIPCT
LPQEYVAHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKIYPEGFMTCVPNSSGTGPQT
LPINGVFTFVSWVSRFYQLKPVGTAGPARRLGIRRS"
gene 6928..7572
/gene="ORF3"
CDS 6928..7572
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QHR93637.1"
/translation="MAQAILGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
SFKHDKEMIGLQVGASTALLQNSLNTRYNLLTQAGMSTADAARAVVGAPTTRVVDWNG
TRIAAPTSSATTLRSGGFMTVPTLYRGSKTNSQLSSGFPNANYMSSSASRTSEWVSSQ
NSSRSSLGPYHPNALQTAWVTPPGSTSTSSLSSASTAPRYFNTERLPLFANLRK"
ORIGIN
1 atggcgagac tccgtgggca tttaggccca cagcgtggtg aaaccaccac aaaaatcaaa
61 gatgccaata tggcattaga tttactacgc cggtcacaaa caccctcccc tacccggcat
121 gagcaccccc ctaaagacca aagagaccgc ccaccacgga ctgtcatgga ggtgaagagg
181 tccatgggtt gggatgatga accagaacaa aaagagagta cagtcagggc atggtgcgac
241 ctcacaaaag aggagaaaga ggaaataatg cgcaacaacg agaggttgtt cgatgccggt
301 ggggtaaccc cttcaactat acccagcaca tttgagagag acagttcaag tgacactgtc
361 gatgaacacc agacagtgtc ctggtctgcc actaacggag ttgacattgg ggttggagaa
421 ctgacaactg ttcgcgggcc ttactggaac ttatgccccc tcccaccatt ggacacccgc
481 aacaatggcc ccgcaaagga acctcttata ggagacatga tagaatttta tgaaggtcat
541 attttccact atgcaatcta cattggacaa ggtaaaacca ttggagtcca ctcaccgcaa
601 gcagcttttt ctatacccag gatcaccatc cacccattgg tcgcatggtg gcgtatatgt
661 tatgtcccca ccaatcaaca acgcctcaca tatgaccagc tgaaagaatt ggagaatgaa
721 ccatggccat acgcctccat aaccaacaac tgctatgagt tttgttgcag ggtgatggca
781 cttgacgata cgtggcttca gagaaagttg gtcactgctg gaaaattcaa ccatcccaca
841 caagaatggt cacaggacac ccctgacttc caccaagact caaaacttga gatggtcagg
901 gatgctgtgc tgtcagcaat aaacggcctt gtgtcacaac ccttcaaaaa tatcctatca
961 aaaatcaaac ctctaaatct catcaacctc ctttctaatt gtgactggac ctttatgggg
1021 gttgttgagt tgattgtact aatggctgaa ttatttgatg tattttggac accacctgat
1081 atatcaagct ttatagcctc actgctacca gaaatccatt tacaaggccc agaagatttg
1141 gctaaagacc tagtccctct catacttggt ggcattggtt tggcaatagg ctttacaagg
1201 gataaggtca caaaggttat gaaaagtgca gttgatggac tgcgctcggc cacgcagctt
1261 gggcagtatg gcttggaagt attctcaatt attaagaagt acttctttgg aggtgaccaa
1321 acagagcgga cgctgcgagg cattgaggat gcagtaatag atatggaggt gctatccagc
1381 acaaatgtga cacagttggt tagggacaag aagctggcca aagcatacat gaatgtgttg
1441 gacagtgaag aggaaaaggc tagaaaactg tcagtccgaa atgctgaccc gcatatagtg
1501 acctctgtca ataacctgat atcccgaatc tctatggcaa ggtcagcatt agccaaggcc
1561 caggcagaaa tgacttctcg catacgccct gtggtcataa tgatgtgtgg cccccctggt
1621 attggaaaaa caaaggctgc tgaacacttg gccaaccgac tagcaaatga gattaggcca
1681 ggtggtaagg tcggccttgt gccacgtgaa tctattgacc actgggacgg ctatcatggt
1741 gaggaggtac tactctggga tgactatggt atgtcaaaaa tcactgaaga ctgcaataag
1801 ttgcaagcaa ttgcggacac cgcaccactt tcccttaatt gtgacagaat tgagaataag
1861 ggtatgcaat ttgtttcaga tgcaatcatt ataaccacca atgcacctgg tccggcccca
1921 gttgattttg taaatcttgg gcccgtatgc agacgagtgg acttcctggt ttactgttct
1981 gccccagagg ttgaacagat gcggagagcg catccaggtg acaccaatgc aattaaggat
2041 ttatataaaa aggatttctc acatttgaag atggaaatag ccccccaggg gggctttgac
2101 aatcaaggta acacaccatt tgggaagggc actatgaaga ctaccacact caatagacta
2161 ctcatacagg ccacagcttt gaccatggaa aggcaggatg agtttcaatt acagggagca
2221 atctacaatt ttgatgagga tagagtggct gcctttacca gtatggcccg agccaatggt
2281 ttggggctta tcaacatggc aactctaggt aagaaactga gaagtgtcaa gaccatggag
2341 ggaatgcgaa atgcactagt gggttacaaa attgaagaat gtgatataat ctggaacacc
2401 cgaacctact caattaagag tgatggtaaa actgtcacag tcaaagagaa acaaagtcca
2461 tcatcagccc agcaccaagc tgtctgtacg gccacccttg ccctatccag gttgcgtgcg
2521 gcccgggctc tggcttacgc ctcttgtttc cagagtgcgg ttttgtctgt gctccagatg
2581 gccggctctg ctgtggtggt aagtagagca gtcaagcgta tgttcggcac gcgcacagat
2641 caaccagctc ttgaaggtgg ccacaaggaa cacaactgta gggtccaccg cgcagaggct
2701 gcaggccgtg gccctatagg gcacgacggt gtcattgagc gctacggctt gtgtgagagt
2761 gaacaagaag atggagatga gcaaacatta gaactgccaa ctgctaataa ggagggcaag
2821 aataagggta aaaccaaaaa gggccgaggt cgcaagtcca actttagtgc cttctcaagg
2881 cgtggcctta gtgatgagga atatgaggaa tataaaaaga tcagggaaga aaagagtggc
2941 aactacagca tccaagaata cctcgaggac cgccagcgat atgaggagga gctagcagaa
3001 gttcaggctg gcggcgatgg tggaataggt gagactgaag cagaaatccg ccatagagta
3061 ttctataaat ccaaggctgg tatgaggaaa cagcgccaag aggaacggcg acaattaggg
3121 cttgttagcg gatctgagat tcgcaagcgt aagcccatag actggacccc tcccaaaaac
3181 gattggtctg aagatacaag gacagtcaat tatgatgaac acatcagctt tgaagcccca
3241 ccatcaatat ggagcagagt tgtgaaattt gggagtggat ggggcttctg ggttagttca
3301 acagtcttca taaccaccac ccatgtaatc ccgccaggct gtaaagaagt ctttggggag
3361 gatctcaaaa acgtggccat tcacagggtt ggtgagttca cccaattccg cttttccaag
3421 aagatgagac ctgaccttag tggtatggta ttggaagaag gttgcccaga aggcacagtc
3481 tgcaccataa tggttaaaag agactcaggt gagttgttac cactagccgt gcgcatgggt
3541 gcggtggcat caatgaaaat ccaagggaag cttatgcatg ggcagtcagg gatgctcctc
3601 accggagcta atgctaaggg catggatctt gggactatac ctggggactg tggagcacca
3661 tatgtgcaca agagaggaaa tgactgggtt gtctgtggcg tacatgcagc agccacgaaa
3721 tcaggcaaca ccgtggtgtg tgccatacaa ggtggagaag gtgaggccac tctggagggc
3781 ggtagccaga ataagggcca ctatgcgggg catcccatac tcaggtatgg taatggaccc
3841 tcattatcaa ctaaaactaa gttctggaaa tcaactccac aaccactgcc ccctggaaca
3901 tacgaaccag cctatcttgg tggaagggat ccaagagtgg aagggggccc atcattgcaa
3961 caagttttga gggaccagct caaacccttt gctgagcctc gcggtaggtt gcctgaggca
4021 ggtcttttgg aagctgcagt ggaaacggtc accaacgcca ttgaacaagt catggacaca
4081 ccagtagcct ggagttttaa tgatgcatgc atgtccttgg ataagaccac cagttctggc
4141 taccctcatc ataagaggaa gaatgatgat tggaatggca ccgcatttgt gcgggagctg
4201 ggggaccagg cagcccacgc caataatatg tttgagcttg gaaaatctat gaaacctgtg
4261 tacactgcag cacttaaaga tgagctcgtt aagccagata aggtgtacaa taagatcaag
4321 aagaggctgc tgtggggagc ggaccttggc acagtcattc gtgccgctag agcatttggt
4381 ccgttttgtg aagccataaa acctcatgtc ataaagttac ctattaaagt tggtatgaat
4441 gccattgaag atggccccct aatttatgca gaacatgcca agtacaaaca ccactttgat
4501 gctgattaca cagcctggga ctccactcaa aacagggaga taatgatgga gtcctttaac
4561 atcatgtgta aactcactgc taacccttcc ttggccgcag tagtggcaca agacttactt
4621 tctccttctg agatggatgt tggagattat gtaatcagtg tgaaagacgg cctgccatca
4681 ggcttcccat gcacctcaca agtcaacagc ataaatcatt ggatcctcac cctatgtgca
4741 ctgtcagaag tcaccgggct ttccccagac gtgttgcagt cacaatcata cttttccttc
4801 tatggggatg acgagatagt ctccacagat gttgaatttg acccaattaa attgacacaa
4861 gtgctcaaag aatatggcct aaaacccaca aggcccgaca agtctgacgg tcccatagta
4921 gtcaagcaac aggtggacgg cctcgtcttt cttcggcgaa ccatctcaaa agatgccatt
4981 ggttaccagg gtcgtctaga ccgaaactcc attgagaggc agctttggtg gacgcgtgga
5041 cccaaccatg atgacccgtt tgagaccttg gtcccacacc cgcagagaaa ggtccaacta
5101 atatctctgc ttggtgaggc tgctctccat ggtgagaaat tctataggaa gatagcaagc
5161 agagtcattc aagaagttaa agaagggggg ttagaaattt acattcctgg atggcaggcc
5221 atgttccgct ggatgcgctt ccatgatctg agcatgtgga caggggatcg cgatctcctg
5281 cccgattatg taaatgatga tggcgtctaa ggacgcccca acaaacatgg atggcaccag
5341 tggtgccggc cagctggtac cagaggcaaa tacagctgag cctatttcaa tggaaccagt
5401 agctggggct gcgacagcag ctgcaactgc tggacaagta aatatgattg acccctggat
5461 aatgaataat tatgtacaag cccctcaagg agaattcacc atttcgccta ataacactcc
5521 tggtgacatt ttatttgacc tacaattggg cccacatctc aaccctttct tgtctcattt
5581 ggcacaaatg tacaatggtt gggtcggaaa catgagagtg aaggtgcttt tggctggcaa
5641 tgcctttaca gctgggaaga ttataattag ttgcataccc cctggctttg cttcacaaaa
5701 tatttctata gctcaagcta caatgttccc ccatgtcatt gcagatgtca gagtgctcga
5761 acctatagaa gttccccttg aggatgttag aaatgtgctc tttcataata atgataattc
5821 ccctactatg agattggtct gcatgttata tacacctctt agggctagtg gcagctcatc
5881 aggtactgac ccatttgtca ttgcaggaag ggtcttgact tgcccgagcc cggattttag
5941 cttcttgttt ctggtccccc cgaatgtaga acagaaaact aagcccttct ctgtgcccaa
6001 cttgccacta aatacactct ccaactcgag ggttccttca cttatcaatg ctatgatgat
6061 ttccagagac catgggcaga tggtgcagtt ccaaaatggt agggtcacac ttgatggcca
6121 gctgcagggt acaaccccta cctcattgag ccagctatgt aagattagag ggaaagtctt
6181 ccttgctagt ggaggcaatg gtctgaatct cactgaattg gatggatctg cttatcatgc
6241 ctttgaaagc cctgctccaa ttgggttccc agatattggt gattgtgatt ggcatatgaa
6301 cgccacaact actagcaatt ttactgggtc caacgatgag caccaaatac ttgtcaaaca
6361 agagtcaaca tttgcccccc accttggtca tgtgcaggct gaccacctac cggaagtcgc
6421 taacactgac cttatggtgt ctttgagttg gatatcccct gtttcagacc aacacaggcg
6481 tgacgtggac ccatgggtca taccgcgtta tggctctacc ctcactgaag ctgcccagtt
6541 ggccccacct atttatcctc ctggatttgg tgaagctata gtgttcttta tgtctgattt
6601 cccagtggtg tcgggtgtta atggtatgag gattccatgc acactacccc aggaatatgt
6661 ggctcatttt gtaaatgagc aagcccccac tcgaggtgag gcagctctct tgcattatgt
6721 tgatcctgac actcacagaa acctaggtga gtttaaaatc tatcctgagg gctttatgac
6781 ctgtgtgcct aattccagtg gaactggccc tcagacctta cctattaatg gagtcttcac
6841 ttttgtttct tgggtttctc gtttctatca gttaaagcct gtgggaactg ctggtccagc
6901 acgtaggctt ggtattagaa gatcataatg gctcaagcca tccttggagc cattgctgcc
6961 actgctgctg gtagcgctgt cggggctggc attcaggctg gaactgaggc tgctctccag
7021 catcagcgtt ttcaacagga tcttacctta caaagtaatt cctttaaaca tgataaagaa
7081 atgattggac ttcaggtagg tgcctctaca gcattgttgc aaaacagttt gaacactcgg
7141 tacaacttat taacacaggc aggcatgtca acagctgatg cagccagggc tgtggtaggt
7201 gcgccaacca cgcgagtggt agactggaat ggcaccagaa ttgcagcccc tacgtcctcc
7261 gccaccactt tgaggtcagg tggcttcatg acagtgccaa cactctatag aggctctaag
7321 accaattctc aattgtcaag tggctttcct aatgctaatt atatgtctag tagtgcatct
7381 aggacttctg aatgggtttc ttctcaaaac tcttctagat cttccttggg accttaccac
7441 ccaaatgcat tgcaaactgc ttgggtcacc cctccagggt caacctccac ctcctcttta
7501 tcatctgctt ctacagcacc aagatatttt aatacagaaa ggcttccttt attcgcaaat
7561 ttaaggaagt gaa
//