Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MN567957 | GII.11 | |
|
|---|---|---|---|
| GII.P11 |
ORF1: 1..5067
ORF2: 5051..6694
ORF3: 6694..7044
LOCUS MN567957 7044 bp RNA linear VRL 01-MAY-2020
DEFINITION Norovirus GII isolate 17diapd90078 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION MN567957
VERSION MN567957.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7044)
AUTHORS Cavicchio,L., Laconi,A., Beato,M.S., Milani,A. and Monne,I.
TITLE Genetic characterization of a divergent swine Norovirus detected
during a pilot study in North East Italy
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7044)
AUTHORS Cavicchio,L., Laconi,A., Beato,M.S., Milani,A. and Monne,I.
TITLE Direct Submission
JOURNAL Submitted (14-OCT-2019) Diagnostic Virology Laboratory, Istituto
Zooprofilattico Sperimentale delle Venezie, Viale dell universita
10, Legnaro, Padova 35020, Italy
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7044
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="17diapd90078"
/isolation_source="feces"
/host="swine"
/db_xref="taxon:122929"
/country="Italy"
/collection_date="2017"
/note="genotype: GII.11"
gene <1..5070
/gene="ORF1"
CDS <1..5067
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QFQ13826.1"
/translation="DGPLTTSTLPLATTPHGNEKPTKVPTPGIFTNVKVGIKKILGDR
ESEIQPPAPTLREKPEPPPPPEGAAAEEPLNEGCVAYHKDGDRIDGLPKGPTDTEPKC
MAYSAPPPHEREDGPAMEPLPGSILEMWDGEIYHYGLYVNDGLVLGVHRPASAICTAT
IELTPLSLYWRVVHVPQNVIPSETLKRLAGEKFPYTAFDNNCYAFCCWVLDLNDSWLS
RKMINRTTGFYRPYQVWNRKPLPTMDDGKMKKVTNVLLCALSSLFTRPIKDVIGSLKP
LNLLNLLASCDWTFGGIVETLVLAGELFGVFWTPPDVSAFLAPLLGDYELQGPQDLAT
ELVPILMGGVGMLLGFTTEKIGRMFTSAANTLRSCRDIGAYGLDVLKLIMKWFFPKAD
EENELAMVRSIEDAVLDMEAVENNHLTSLLKDRDSLATFMKTLDVEEEKARRLSTKSA
SPDIVGTINALLARISAARSLVHRAKEEMSNRVKPVVVMISGRPGIGKTHMARDLARK
IGATMSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVKDALTLQELADTCPVT
LNCDRIENKGKMFDSDVIIITTNLANPAPLDYLNSEASSRRVDFLVYAESPDVEKVKK
EFPGQPDMWKDAYQQDHSHIKLQLAPQGGFDKNGNTPYGKGVMKTLTQNSLVARVAAL
VHERADEFALQGDDLPLYNFDVDKINSFRKMAADNKYGFFETMKVGAALKSVDSIEGL
KTALKGVTLKPCKVVYKGTIYQIESGRGGLAIKKLEDRYAQSSGSLFGVLTRVRQARA
KYYLKCFQELIYTTLQIAGAAFVTSRIVKRSSWCNSWRQTTEPSTSNPVEEPPPTQPQ
VWEVDPVAADQEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREEREGKYSIEEY
LRDRDRYYEELAIAQATEENFAEDDEMRLRQRIFRPTKKQRREERATLGLVSGTEIRK
RKADDFQPKGKLWADDSREVDYNETINFEAPSSIWSRVVPFGTGWAFWVSPSLLITTT
HVVPKDTTEIFGVPIAQIQVHKSGEFCRLRFPRPMRTDVSGLILEEGAPEGTVCTILI
KRSSGELLPLAVRMGTHATMKIQGRTIGGQMGMLLTGANAKNMDLGTSPGDCGCPYIY
KRGNDFVVAGVHTAAARGGNTVVCATQGPDGEATLEGGENHGTYCGAPILGPGKSPKL
STKTKFWRSSTTPLPPGTYEPAYLGGRDPRVENGPSLQQVMRDQLKPFTAPRGKPPRP
SVLESAKETIVNFLEQTLEPAKKWSYSQACQSLDKTTSSGDPHHVRKNDHWNGETFTG
PLADQASKANLLYEQGKHAQPVYTAALKDELVKTEKIYGTVKKRLLWGSDLGTMIRCA
RAFGGLMEEMKENCILLPIRVGMNMNEDGPAIFERHARHTYHFDADYSRWDSTQQRGI
LAAALDIMVKFSAEPELAQVVAEDLLAPSVLDVGDFRIAIVEGLPSGVPCTSQWNSFA
HWLITLCAMSEVTGLSPDVIQAHSCFSFYGDDEIVSTDITLDPSKLTEKLKEYGLKPT
RPDKTEGPLVIQKNLSGLTFLRRTIVRDPAGWFGKLDKDSILRQLYWTRGPNHEDPME
TMVPHSQRAIQLMALLGEASLHGSNFYGKVSRMVISEIKEGALEVLREAALECAGFSD
LSTWEGDRNLAPSGVNEDGV"
mat_peptide <1..981
/gene="ORF1"
/product="p48"
mat_peptide 982..2079
/gene="ORF1"
/product="NTPase"
mat_peptide 2080..2604
/gene="ORF1"
/product="p22"
mat_peptide 2605..3003
/gene="ORF1"
/product="VPg"
mat_peptide 3004..3546
/gene="ORF1"
/product="Pro"
mat_peptide 3547..5064
/gene="ORF1"
/product="RdRp"
gene 5051..6694
/gene="ORF2"
CDS 5051..6694
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QFQ13824.1"
/translation="MKMASNDASPSTDGSAGLVPEVNNETMALEPVVGAPLAAPVAGQ
HNIIDPWIKMNFVQAPNGEFTVSPRNAPGEILLDLELGPDLNPYLSHLARMYNGYAGG
MEVQVVLAGNAFTAGKIIFAAVPPNFPAENLSAAQVTMCPHVIVDVRQLEPVMLPMPD
IRNKLFHYNQVDDPKLRLLAYLYTPLRANNAGDDVFTVSCRVLTRPTPDFEFMFLVPP
TVESKIKPFSLPSLTLDELSNSRFPAPIVQLYTNPHDNLVVQPQNGRCTIDGLLQGTT
QLVSCNVCSLRGTVGDGQPASHSEDEIMPMAFNIQREIMLENLDGSPYDPTDDIPAVL
GAPDFQGVVFGILSQRNADGQTRAHEAKVDTRAARYAPKLGFVVATVESTDFHANQPC
KFTPVGLGGDANRDFNQWQLPAYGGALTNNTNLAPPVMPVYPGEQLLFFRSQLPSSGG
VVAGWLDCLLPQEWVQHFFQESAASQSDVALVRYVNPTTGRVLFEAKLHKQGFLTVAA
SGSYPLVVPADGYFRFESWVNQFYTLAPMGNGSGRRRAR"
gene 6694..>7044
/gene="ORF3"
CDS 6694..>7044
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QFQ13825.1"
/translation="MAGQFLLGLATDLIGGGIGSLISAGANAINQKVEYDFNKKLQSF
SFAHDKEMLQAQVDATKQLQQDLIQLKQDTLLSAGYLPADAARGSLGVPMTKALDWNG
TRYWAPNSMGTSSYS"
ORIGIN
1 gatgggcctc taacgacgtc aacgttgccg ctggcgacaa caccacatgg caatgaaaaa
61 ccaacaaaag tgcctacccc aggcattttt accaacgtta aagttggtat taaaaagatc
121 ttaggtgatc gcgaaagcga gatccaaccc cccgcgccca cactgcggga gaagccagag
181 ccgccccctc cccctgaggg ggcggctgca gaagaacccc tgaatgaggg ttgtgtggcc
241 taccataaag atggtgatag aatcgatggg ctccccaagg ggcccaccga cactgaaccc
301 aagtgcatgg cctacagcgc gcccccccct catgagaggg aggatgggcc tgcaatggaa
361 ccactcccag gctctatcct tgagatgtgg gatggcgaga tctaccacta cgggctttat
421 gttaatgacg gcctggttct tggggtccac cgccctgcct ctgcaatttg caccgccacc
481 attgagctga caccgctctc actttattgg cgagtggtgc atgtccctca aaatgtcatc
541 ccctcagaaa cgctaaaacg ccttgccggg gaaaaattcc cctacacggc gtttgacaac
601 aactgctacg cgttctgttg ttgggttttg gatctgaacg attcctggct ttcccgtaaa
661 atgataaatc gtaccactgg tttttataga ccctaccagg tttggaatag gaaacccctc
721 cccactatgg atgatggaaa gatgaagaaa gtaacgaatg tgttgctttg tgccttgtcc
781 tccctcttca ctcgcccaat taaggatgta attggcagtt tgaaacccct caacctactc
841 aacttgctgg catcatgtga ctggacattt ggtgggattg ttgagaccct ggttcttgcc
901 ggcgagctct ttggggtctt ttggacgccc ccagatgtct cggccttcct tgctcccttg
961 cttggtgatt acgagcttca ggggcctcaa gacctggcca cagaactcgt gcccatactt
1021 atgggcgggg ttgggatgct actcgggttc actactgaga agatagggcg catgttcact
1081 tcagcagcaa acaccctacg atcgtgccgg gacatcggag cgtacgggct ggacgtcctc
1141 aaattgatca tgaaatggtt cttccccaag gctgacgagg aaaacgagct tgcaatggtt
1201 cgatcaatag aagatgctgt tctagacatg gaggcggtgg agaacaacca cctcacctcc
1261 ttgcttaagg atagggacag tcttgccaca ttcatgaaga cacttgacgt ggaggaggag
1321 aaagcgagac gcctttccac caagtctgca tctcccgaca tagtaggaac cataaacgcc
1381 cttcttgcgc gaatttcagc agcgcgttcc ctagtgcatc gcgcaaaaga ggagatgtcc
1441 aaccgagtga aaccagttgt agtcatgata tcaggcaggc ctggtattgg aaaaacacac
1501 atggccagag acttggcgcg gaagatcggc gccacaatgt cgggtgatca aagagtcggc
1561 ttggtcccga ggaatggtgt cgaccattgg gacgcctaca agggggagag gatcgttctc
1621 tgggatgact atggcatgag caaccccgtg aaggatgctc tgacactgca ggaattggca
1681 gacacctgcc ccgtgaccct aaactgtgac aggatagaga acaagggaaa gatgtttgac
1741 agtgatgtta tcataataac aaccaaccta gcaaaccctg cccccctgga ttatctcaac
1801 tctgaggctt cttctagacg ggtggacttc ttggtctacg cagagtcacc tgacgttgag
1861 aaagtgaaga aggagttccc cggtcaaccc gacatgtgga aagatgctta ccaacaggac
1921 cactcgcaca tcaagctaca actggccccc caaggaggtt ttgacaagaa tggcaacacc
1981 ccttatggga agggcgtgat gaagacactc acccagaact ccctcgtggc acgcgttgct
2041 gcccttgttc acgagagggc tgacgagttc gccctccagg gtgacgactt gcccctttac
2101 aactttgatg tggacaagat aaactccttc aggaagatgg ctgctgataa caagtatggg
2161 ttctttgaga cgatgaaggt tggggctgcc ctcaaaagtg tggattcaat agagggcctt
2221 aagactgcct tgaagggggt cactctgaaa ccttgtaagg tggtctacaa ggggacaatc
2281 taccagattg agtcgggtcg tggcggtctt gcgattaaga aactagagga ccgctacgcc
2341 cagagttccg ggtccctttt tggtgtactt actagagtcc gccaagcaag agccaagtac
2401 taccttaagt gcttccaaga actgatttat accaccctac agatcgctgg ggccgccttt
2461 gtgacatcga ggatagttaa gagatctagc tggtgcaact cttggcggca aacaactgag
2521 cccagcacct cgaatccagt cgaggagcca cccccaacac aaccccaggt ctgggaggtt
2581 gaccccgttg cggctgacca agaggggaag aaagggaaga acaagaaggg ccgcggtaag
2641 aaacatacag ccttctccag taaaggactc agtgatgaag agtatgatga atacaagagg
2701 ataagggagg agcgtgaggg caagtactct attgaggagt acctccgtga tcgggatcgt
2761 tactacgagg agttggccat tgcacaagca acagaggaga acttcgcgga ggacgacgag
2821 atgagactcc gccagagaat ctttaggccc accaagaaac agaggagaga agagagagcc
2881 acccttggcc tagtgtctgg cactgaaatc aggaaaagga aggccgatga cttccaaccc
2941 aagggaaagt tgtgggctga tgacagtcgg gaggtcgact ataacgaaac catcaacttt
3001 gaagccccct cgagtatctg gtcacgcgta gtcccttttg gcaccggctg ggcattctgg
3061 gtatccccga gcctcttgat caccaccacc catgtcgtgc ccaaggacac aactgagata
3121 tttggtgtgc cgatcgcaca gatccaagtc cacaaatcgg gtgagttttg tcgcctgaga
3181 ttcccccgac ccatgagaac tgacgtcagc ggtctgatcc tggaggaggg tgcacccgag
3241 ggcactgtct gcaccatcct cattaagagg tccagcggag aactcctacc ccttgcggtg
3301 aggatgggaa cccacgccac catgaagatc caaggcagaa caatcggtgg ccagatgggc
3361 atgctcctta ctggagctaa tgcaaagaac atggacctag gcaccagccc cggggactgt
3421 ggttgcccct acatatacaa gaggggcaat gactttgtgg tggcaggagt gcacacggct
3481 gctgcgaggg gtggtaacac ggtggtctgt gctacccaag gccctgatgg tgaggccaca
3541 ctagagggag gtgagaacca cggcacctac tgtggcgcac caattttagg gccggggaag
3601 tctccgaagt taagcacaaa aaccaaattt tggaggtctt ccacgacccc actcccccct
3661 ggcacctatg aaccagccta cttgggtggc agggacccac gcgtggaaaa cggcccatcg
3721 ttgcagcaag tgatgaggga ccaactcaag cccttcactg cccccagagg aaagccgccc
3781 aggccctcag tcctggaatc cgctaaagaa accatagtga attttctaga gcaaaccctt
3841 gaacccgcca aaaaatggag ttactcacag gcctgtcaat ctctggataa gaccacctct
3901 agcggtgatc cccaccatgt gaggaagaat gatcattgga acggtgagac ctttacaggc
3961 cctttggcag accaagcctc aaaagctaac cttctctatg aacagggcaa acacgcccag
4021 cccgtttaca cggccgccct gaaggacgag ctcgtcaaga ctgaaaagat ctatggtaca
4081 gtgaagaaga ggcttctttg gggctcggac ttgggtacga tgatcagatg tgcacgggcc
4141 tttgggggcc taatggaaga gatgaaggag aactgcatcc tgttgccaat cagggttggg
4201 atgaacatga atgaagatgg accggctata tttgagaggc acgcgcggca cacctaccat
4261 ttcgatgccg attattcgcg gtgggactcc acccaacaga gaggcatcct ggccgctgca
4321 ttggacatca tggtgaaatt ctctgctgaa cctgagttag cccaggtggt ggcggaagac
4381 cttcttgccc ccagtgtcct tgacgttggc gactttcgca tcgccatcgt agagggcctc
4441 ccctctggag tgccatgcac gtcacagtgg aactcttttg ctcactggtt aatcaccctc
4501 tgcgctatgt cagaggtgac gggcctctcg cccgatgtga tccaagccca ttcctgtttc
4561 tctttctacg gtgatgatga gattgtgagc acagacatta ccctggaccc cagtaaactt
4621 acagaaaaat tgaaggaata tggcctaaaa ccaactagac cagacaaaac cgaagggccc
4681 ttagtgatcc agaagaactt gtcgggcttg acatttctga ggaggacaat agtacgtgat
4741 ccagctggat ggtttggcaa gcttgataaa gactccattc tgaggcaact ctactggacc
4801 agaggaccaa atcatgagga ccctatggaa actatggtgc cccactcaca aagagcaata
4861 caactgatgg ccctgctagg ggaagcctca ttgcatggct ccaactttta tggcaaagtt
4921 agtaggatgg tgataagtga gatcaaggaa ggtgctctgg aagttttacg tgaagccgcc
4981 ttggaatgtg ccgggttctc agacctcagc acgtgggagg gcgatcgcaa tctggctccc
5041 agtggtgtga atgaagatgg cgtctaacga cgcttctcca tctacggatg gatccgccgg
5101 tctcgtacca gaggtcaaca atgagaccat ggccctagag ccagtggtgg gcgcccctct
5161 cgccgctccc gtcgctggtc aacataatat tatagacccc tggattaaaa tgaattttgt
5221 gcaggcaccc aatggagaat tcaccgtttc ccctcgaaat gccccaggtg agattttgtt
5281 agacttagaa cttggtcctg atcttaatcc ttacctttca catttggccc gcatgtacaa
5341 tggttatgca ggtggcatgg aggtgcaagt tgtgctggcc gggaatgctt tcaccgctgg
5401 taagattatt tttgctgctg ttccgccaaa ctttccagca gagaatctta gtgcagcaca
5461 ggtcaccatg tgcccccatg tgattgttga tgttagacag ttggaaccag ttatgctccc
5521 catgcctgat attcggaaca agttatttca ttacaatcaa gttgatgacc caaagcttag
5581 attattggcc tatctttaca caccccttcg ggcgaacaat gctggggatg atgtttttac
5641 agtttcctgc cgagttttga ctaggccaac cccagatttt gagtttatgt ttttggttcc
5701 tcccactgtt gaatctaaga ttaagccctt ttccttgccc agccttaccc ttgatgaact
5761 ttctaattcc agatttcctg cgcccatagt tcagctttat actaaccccc atgacaacct
5821 ggttgtgcag ccccaaaatg ggaggtgcac catagatggt ctcctgcagg gcactacaca
5881 actcgtgtcc tgtaatgttt gcagtctcag gggcaccgtt ggtgatggcc aaccggcaag
5941 ccatagtgag gatgagatca tgcccatggc ttttaatatc cagcgcgaga tcatgctgga
6001 gaaccttgat ggctcaccct atgacccaac tgatgacatc ccggcagtgt tgggtgcccc
6061 tgactttcag ggggtcgtgt tcggcatcct cagccagagg aacgccgacg gacaaaccag
6121 ggcgcacgag gctaaggtgg acaccagggc ggctcgctac gcccctaagc ttggctttgt
6181 tgtggccact gtggagagca cagattttca tgccaatcaa ccctgcaaat tcacccctgt
6241 tgggctgggc ggggatgcca atcgggactt caaccagtgg cagttgccag cctatggcgg
6301 tgcattgaca aacaacacca acctcgcccc gcctgtgatg cccgtctacc caggggagca
6361 gctccttttc ttccgctccc agctgccaag ttccggtggc gtggttgccg gatggctgga
6421 ctgcctgctc ccccaggagt gggtgcagca ctttttccag gaatcggccg cctcccaaag
6481 cgatgtggcc ttggttaggt atgtaaaccc caccacaggt agagtgctct ttgaggcgaa
6541 gctacacaaa cagggtttcc tcaccgtggc tgcctcaggt tcttacccct tggttgttcc
6601 tgctgatggt tattttagat ttgaatcttg ggtgaatcag ttttatactt tggcccccat
6661 gggaaatggc agcgggcgca gacgagctcg ttgatggctg ggcagttctt gttgggtttg
6721 gctacagatc ttattggggg tggtataggg tctttaatta gtgctggtgc taatgcaatt
6781 aatcaaaaag ttgagtatga ttttaataag aagttacaat ctttttcctt tgcccatgat
6841 aaagagatgt tgcaggcgca ggtcgatgca actaagcaat tgcagcagga tttgattcag
6901 ctaaagcaag acacccttct ttctgccggc tatctacccg ctgacgcggc taggggctct
6961 ctcggtgtgc ctatgaccaa ggccttggat tggaatggta ctaggtactg ggcccccaat
7021 tctatgggca cttccagcta ttca
//