Typing tool
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Typing tool
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Complete norovirus genomes
| MN453359 | GII.24 | |
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| GII.P24 |
ORF1: 5..5095
ORF2: 5076..6704
ORF3: 6704..7468
LOCUS MN453359 7523 bp RNA linear VRL 18-SEP-2019
DEFINITION Norovirus GII isolate Hu/PE/2013/GII.24[P24]/Loreto7940, complete
genome.
ACCESSION MN453359
VERSION MN453359.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7523)
AUTHORS Chhabra,P., Browne,H., Kosek,M.N., Olortegui,M.P., Montmayeur,A.M.,
Tatusov,R.L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (13-SEP-2019) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7523
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Loreto7940"
/isolate="Hu/PE/2013/GII.24[P24]/Loreto7940"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Peru"
/collection_date="29-Apr-2013"
/note="Amplicon sequencing: first 35 nt does represent
primer sequence;
genotype: GII.24[P24]"
gene 5..5095
/gene="ORF1"
CDS 5..5095
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QEP54813.1"
/translation="MKMASNDASAATAGTTSTNSEIHNKDENPSSNIFANMTVGIKRA
LGARSKQLAPGATPNNKIGKTIIPPVPPPPPNGEDIVIKYTKQEDTVSGVPSVSTVDI
SPPHDTAYSVPPLDQREKVDAKEPLTGSIIEMWDGEIYHYGLYVEKGLVLGVHKPPAA
MSIARIELTPLSLYWRTVYTPPYLVAPDTLRKLHGETFPYTAFDNNCYSFCCWVLDLN
DSWLNRKFVSRTTGFYRPYQDWNRKPMPTMDEGKLKKVANVFLCGLTGLFTRPIKDII
GKLKPLNFLNIVANCDWTFPGVVEAIILLSELFGIFWTPPDISAFVASLLGDYEMQGP
EDIATEIVPVILGGIGMVLGFTKEKIGRLLGSAASSLRACREIGNYGIEVVKLVMKWF
FPTKSEVNEMEMVRTIEDAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKL
STKSASPDIVGTINALLARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLAR
DLAKKMAATLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELAD
TCPLTLNCDRIENKGKVFDSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSV
DKAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIA
RATGLLHERLDEFDLQGPELPVYNFDQNKVAAFRKLAADNKYGFMDTLRAGNKLKEVK
TLDQFKEAVKDIRIKPCRIIYNSLAYDLDSNGSGKVNVKKVGDQRIQANNELNSALNK
LRGARIRYYVKCFQEMIYSLLQIAGAAFVTSRMAQRMNVNKLWAKPEKQSETLTEPPT
PPIEDWTITPADTVQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYS
IEEYLQDRDRYYEELAIAKATEENFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLF
ITSTHVIPQNMSEAFGVPINQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVV
TILIKRTTGELMPLAARMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGC
PYVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGN
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGK
PPRPAILEAAKETICNVLEQTIEPPQKWSYAQACASLDKTTSSGHPHHKKKNDNWNGE
SFTGVLADQASKANLMFEQGKHMQPVYTGALKDELVKTSKIYENIKKRLLWGSDLGTM
IRCARSFGGLMDEMKANCVRLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQ
QRYVLGAALEIMVRFSAEPELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQW
NSIAHWLLTLCAMAEVSGLSPDVIQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLKEYG
LIPTRPDKTEGPLIIKESLEGLTFLRRDVCRDPVGWFGKLDQSSIMRQLYWTKGPNHE
DPSETMIPHSQRPVQLMSLLGEAALHGPAFYKKVSKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 5..1000
/gene="ORF1"
/product="p48"
mat_peptide 1001..2098
/gene="ORF1"
/product="NTPase"
mat_peptide 2099..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3019
/gene="ORF1"
/product="VPg"
mat_peptide 3020..3562
/gene="ORF1"
/product="Pro"
mat_peptide 3563..5092
/gene="ORF1"
/product="RdRp"
gene 5076..6704
/gene="ORF2"
CDS 5076..6704
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QEP54811.1"
/translation="MKMASNDAAPSNDGAANLVPEANKEVMALEPVAGGAIAAPLTGQ
TNIIDPWIMNNFVQAPNGEFTISPRNSPGEVLLNLELGPDLNPFLAHLSRMYNGYAGG
VEVQVIMAGNAFTAGKVIFAAVPPHFPVDNLSPPQVTMFPHVIVDVRTFEPILLPLPD
VRNSFYHYNQVNDSRMRLIAMLYTPLRSNGSSDDVFTVSCRVLTRPTPDFEFNYLVPP
TVESRTKPFSVPILTIGEMTNSRFPLPIDMLYTSPTENIVVQPQNGRCTLEGELLGTT
QLVTPNICALRGEIRGHEGSGDNHKWHFMVRSPNGAAFDPTEDVPAPLGTPDFIGDVF
GVLSQRNRNTDSGQSGPANRSHDAVVSTRDSRFTPKLGSVMIATWETSDIQDQPTRFT
PVGLENPDHYNQWQLPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYIPLKGGYGDSH
IDCLVPQEWIQHFYQESAPSQTDVALIRYVNPETGRVLFEAKLHRQGYITVARSGSSP
INVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
gene 6704..7468
/gene="ORF3"
CDS 6704..7468
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QEP54812.1"
/translation="MAGAFLAGLAGDIATNTMGSLVSAGANAINQKVDFENNKFLQGE
SFKHDKEMLNAQVEATKKLQMDMINIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATTTTSMSGGFTSQVVHRPTPNFGNKQAPRPAPSIASSERSNSTQLTSLSS
HSSGSSRSSGSTVVSSLPSSSRTREWVDSQNFNLEPHLPGSLKTAFVTPPSSVASSSG
TVSTVPKGVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgcgacc gctggtacaa ccagcacaaa
61 cagtgaaatt cacaacaaag atgagaaccc ctcatcaaac atatttgcca acatgactgt
121 tggtataaaa agggctctgg gggcgagatc aaagcaactc gcccctggag ccacaccaaa
181 caacaaaatt gggaaaacca tcatcccccc tgtgcccccc ccacccccaa atggtgagga
241 catagtaatc aagtatacca aacaagagga cacggtcagt ggggtgccta gcgtctccac
301 cgtagacata tcccctccac atgacactgc atacagtgtc ccccccctgg accaaaggga
361 gaaggtggat gcaaaagagc ccctgactgg ttcaataata gagatgtggg acggtgagat
421 ctatcattat gggctctacg tagagaaggg gctagttctt ggcgtgcaca aacccccagc
481 tgccatgagc attgcgcgca tcgagctaac ccctctctct ctgtactgga gaacagtata
541 cacaccccct tacctggttg cccctgacac ccttaggaaa ctccatggtg aaacctttcc
601 ctatacagca tttgacaaca attgttactc attctgttgc tgggttttgg acctgaacga
661 ttcctggctc aacagaaagt ttgtgtctcg aaccacgggc ttctacagac cctaccaaga
721 ttggaacaga aaaccaatgc caaccatgga cgagggaaaa ctcaagaaag tggccaatgt
781 gttcctgtgc ggcctgactg ggctgttcac caggcccatc aaagacatta taggtaagtt
841 gaagccgctg aatttcctta acatcgttgc caactgcgac tggaccttcc ctggcgttgt
901 ggaagcaata attctcctct cagaactttt tggcatcttt tggacaccac cagatatatc
961 tgctttcgtt gcctccttac taggtgacta cgaaatgcaa ggccctgaag acatcgcaac
1021 cgagatcgtt ccagtcatcc tcggcggtat tggtatggtt ctaggcttca ccaaagagaa
1081 aattggccga ctgctgggct ctgcggcatc atcccttaga gcatgcagag agatcggcaa
1141 ctatgggata gaggtggtga aactggtaat gaagtggttc ttcccgacca aaagtgaggt
1201 taatgagatg gaaatggtca gaacaataga ggatgcagtg cttgactttg aggcgataga
1261 gaacaaccac atgacagctt tactcaaaga caagaacagt ctggccacct ttctcagagc
1321 actagacatg gaagaggaaa aggcgcggaa actgtcgacc aaatccgcct cacctgacat
1381 agtcggcacc ataaacgcac tcttggcgag aatcgccgct gccagatccc tagttcacag
1441 ggccaaggaa gagatgtcat ctaggatgcg tccagtcgtc atcatgattt ctgggcgacc
1501 tgggattggg aaaacacacc tggcacgcga cctggccaaa aagatggcgg ccaccttatc
1561 gggtgaccag agagtgggcc ttgtcccaag aaacggtgtc gatcactggg atgcatacaa
1621 aggggagagg atcgtcctct gggatgatta tggcatgagt aaccctgtgg cagatgctct
1681 ccggctccag gaactcgccg acacctgccc cttgacactc aactgtgaca ggatagagaa
1741 caaagggaag gtctttgaca gtgacaccct gatcatcacc accaatctgg ccaatccagc
1801 tcctctcgac tatgtaaact ttgaggcttg ttcacgccgc atagacttcc ttgtctacgc
1861 ggattccccc tcagttgaca aagcaaaaag agatttcccg ggccaaccgg acatgtggaa
1921 ggacgccttc aagtcagatt tctcacacat aaagctacaa ttagcaccac aaggaggatt
1981 tgacaagaat ggaaacaccc ctcatgggaa gggcgtcatg aaaacactga ccacacactc
2041 cctcatagca cgcgccactg gcttgcttca tgagaggttg gatgaatttg acctgcaagg
2101 tccagagcta ccagtgtaca attttgatca aaacaaggtg gccgcgttcc gaaaactcgc
2161 agctgacaac aagtatggtt tcatggacac cttgagagca ggtaacaaat tgaaggaagt
2221 caaaaccctg gaccagttta aagaagcagt gaaggacata cgcataaaac cctgcaggat
2281 aatttacaac tcactagcct atgatttgga ttcaaatggg tcaggaaagg tcaatgtcaa
2341 aaaggtgggg gaccaacgaa tccaggccaa caatgagctc aactctgcac tcaacaaact
2401 gcgcggggcc agaatcagat actatgtgaa atgtttccaa gaaatgatct actcacttct
2461 ccaaattgct ggtgcggcct tcgtcacgtc tagaatggcg cagaggatga atgtcaacaa
2521 actgtgggcc aagccagaaa aacagtcaga gaccctcacg gaaccaccta cccctccaat
2581 tgaagattgg accataacac cagcagacac agtccaagag ggtaagaaag gtaaaaacaa
2641 gagtggcagg ggcaagaagc acactgcgtt ctccagcaag ggcctcagtg atgaggagta
2701 tgatgaatac aaaaggatca gggaagaacg tcaaggaaag tactctatag aggaatacct
2761 ccaagacagg gaccggtact atgaagaatt ggctatagcc aaagcaacag aagagaattt
2821 ctgtgaagag gaagaaatca aaatcaggca gaggatcttc cgcccaacca ggaagcaacg
2881 taaggaggag agggccaccc taggtcttgt tacaggtagt gagataagga agaggaaccc
2941 cgatgacttc aagccaaaag gcaagctgtg ggccgatgat gaccgcagtg tcaactacaa
3001 tgagagaata gactttgaag ccccccctag tctttggtcc aggatagtca acttcggttc
3061 aggatggggt ttttgggtct cctctaacct gttcatcact tccacacatg tcatcccaca
3121 aaacatgtct gaagcctttg gagtgccaat aaatcagata caaatacaca ggagtgggga
3181 attctgcaaa atgagattcc cgaaagccat cagacccgac gtttctggca tgatccttga
3241 ggagggtgcc cctgaaggga cagttgtgac catattgatc aaaagaacaa ctggtgaact
3301 catgccatta gcagcccgca tgggcaccca cgccaccatg aagatacaag gtagaatgat
3361 tggaggccag atggggatgc ttctcacagg atccaacgcc aaaaacatgg accttggcac
3421 cgtccctggt gactgtggct gtccctatgt ctacaagagg ggcaatgact gggtcgtcat
3481 tggggtacac accgccgccg ctagaggcgg caacacagtg atctgtgcca cccaggggcc
3541 agatggtgaa gccaccctcg agggaggtga caaccatggg acgtactgtg gtgcacccat
3601 actagggcct ggaaacgccc caaaactcag taccaagacc aaattttgga gatcatccaa
3661 caccccactt ccccctggca catacgaacc tgcctacctc ggaggtaaag acccaagggt
3721 caaaggtggc ccgtcactac aacaagtcat gagggaacag cttaagccct tcacagcccc
3781 aagaggaaaa ccgccaagac cagcgatctt ggaggccgca aaggaaacca tctgtaatgt
3841 actagaacag accattgaac caccccaaaa gtggtcctac gcgcaagcct gcgcgtccct
3901 agacaagaca acttcaagcg gacacccaca ccataaaaag aaaaatgaca attggaatgg
3961 tgaatctttc actggtgttc tggctgatca ggcgtcaaag gccaacctca tgtttgagca
4021 gggaaaacac atgcaacctg tgtacacagg agccctcaaa gatgaacttg tcaaaaccag
4081 caaaatctat gagaacatta agaagaggct tttatgggga tcagacttgg gcacgatgat
4141 acgctgtgct agatcatttg gtggtctcat ggacgagatg aaggcaaact gtgtgaggtt
4201 accagtcagg gttggtatga acatgaatga ggatgggccc ataatctttg agaaacattc
4261 aaaatacaga taccattatg atgctgacta ttctaggtgg gactcaacac aacagagata
4321 tgtcttaggt gctgcccttg aaataatggt taggttctca gccgagccag aattggcaca
4381 aattgtggct gaagatctct tgtcgcccag cgtcatggac gtcggtgact tcaaaattac
4441 tataaatgaa ggcttgccct ctggggtccc atgcacgtcc cagtggaatt caattgctca
4501 ttggttgttg acattatgtg ccatggcaga ggtctcagga ttgtcaccag atgtgataca
4561 gtcaaattcc tgcttctcct tttacggaga cgatgagata gtcagcacag atatcaaatt
4621 ggaccctcaa aaattaacag acaagctaaa agagtacggc ttgatcccaa ccagacctga
4681 caagacagaa ggccctctga taatcaaaga aagtttggag ggtttaacct ttctgagaag
4741 agatgtgtgt agagatccag ttgggtggtt tggtaaactt gatcagtctt caatcatgag
4801 acaactgtat tggactaaag gacccaatca tgaagaccct agtgaaacaa tgataccaca
4861 ttcccagagg cctgtgcagc tgatgtccct actaggtgaa gcagccctac atggaccagc
4921 tttctacaaa aaggtcagca aattggttat cactgaactc aaagaaggtg gaatggattt
4981 ctatgtgccc aggcaagagc ctatgtttag atggatgagg ttctccgatc tgagcacgtg
5041 ggagggtgat cgcaatctag ctcccgaggg tgtgaatgaa gatggcgtcg aatgacgctg
5101 ctccatctaa tgatggtgct gccaacctcg taccagaggc caacaaagag gttatggcat
5161 tggaaccagt ggcgggcggg gcaatcgccg cacccctcac tggtcaaaca aatataattg
5221 acccctggat catgaataat tttgtgcaag caccaaatgg tgaatttaca atatctccca
5281 gaaattcccc aggagaagtg ttgttaaatc tagagttagg accagacctc aaccctttcc
5341 ttgcccattt gtctagaatg tataatggat atgcgggggg agtggaggtg caagtgatta
5401 tggctggcaa cgctttcacc gcgggaaaag tcatcttcgc agctgtacca ccgcacttcc
5461 cagttgacaa cctcagcccc cctcaggtga ctatgtttcc acatgttata gttgatgtta
5521 ggacctttga gccaatccta cttccccttc cagatgtgag aaatagcttc tatcattata
5581 atcaggtgaa tgattcaagg atgaggttga ttgctatgct gtatacccca ctgagatcaa
5641 atggttcttc cgatgatgtt ttcactgtat cctgtagagt tttgactagg cccaccccag
5701 attttgagtt caactacctg gtcccaccta ctgtcgaatc aagaacaaaa cccttcagtg
5761 tgcccatcct aactattgga gaaatgacaa attcaaggtt tccactgccc atagacatgc
5821 tgtacaccag cccaactgaa aacatagtag ttcagcccca aaatggtagg tgcacgttgg
5881 aaggagaact actgggcaca acccagttag tgaccccgaa catctgcgcg ctacgtgggg
5941 agatcagggg gcatgaaggc agtggtgaca accacaaatg gcattttatg gtgaggagcc
6001 ccaatggggc agcttttgac ccaactgagg atgtgcccgc ccccctaggc acccctgatt
6061 tcataggtga tgtgtttgga gtcctctcac aaagaaacag aaacactgac agtggtcagt
6121 ctggtcctgc aaacagatca catgatgctg ttgtttccac aagggacagc agattcactc
6181 caaaactagg atctgtgatg atagccacct gggagaccag tgacatccaa gaccagccca
6241 ccagattcac tccagtaggc cttgaaaacc ctgatcatta caaccaatgg caattaccaa
6301 attattcagg ggcattaact ctaaacatgg ggctggcccc atctgtgttt ccaacctacc
6361 ccggagagca aatcctcttc ttccgctcgt acatcccact taagggcgga tatggagatt
6421 cccacattga ttgcctggta ccacaggaat ggatccaaca tttctaccaa gaatcagccc
6481 cctcacaaac tgatgtggca ttaatcaggt atgtgaaccc cgaaacagga cgtgtcctgt
6541 tcgaggccaa gttgcatagg caaggttaca taacagttgc aaggagtggc agcagtccca
6601 tcaatgtccc ggccaatggc tatttcagat tcgactcctg ggtcaaccaa ttctactcac
6661 tcgcccccat gggaactgga aacgggcgca gaaggatcca ataatggcag gagctttctt
6721 agcaggattg gcaggcgata tcgccactaa caccatgggg tctttggtca gtgcaggggc
6781 taatgcaatc aatcagaaag ttgattttga gaataataaa tttcttcaag gtgaatcttt
6841 taagcatgat aaggaaatgt tgaatgcaca ggttgaagcc acaaagaaac tccagatgga
6901 catgattaac atcaaacaag gggtcttgac tgctggggga ttttccccca ctgatgcagc
6961 ccggggggcc atcaacgcac ccatgactaa ggtgctggat tggaatggga caaggtactg
7021 ggcaccgaat gccaccacca caacctcaat gtctggtggc ttcactagtc aggtcgtgca
7081 caggccaaca ccaaattttg ggaacaagca agcccccagg cccgcgccta gcattgcttc
7141 atctgagaga tcaaattcta cccaactcac cagtctgagc tcccactcct ctggatcttc
7201 gaggtccagt ggatccaccg tggtcagctc actgccctct tcgagtagga ctagggagtg
7261 ggtagacagt caaaatttca atttggaacc ccatttgcct gggtcgctga agacagcctt
7321 tgtcacccca ccatcaagtg ttgcttcaag ctcaggaaca gtctcaactg tgcctaaagg
7381 tgttttggac tcctggacat ctgcgtttaa cacgcgcaga cagccgctct tcgcacacct
7441 tcgtagaagg ggggagtcaa atgtttagtg aaaagattgt ttgattaaat ttgatttaat
7501 ttggcttaaa tcttttaaaa aaa
//