Typing tool
|
Complete norovirus genomes
MN453358 | GII.23 | ||
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GII.P23 |
ORF1: 5..5095 ORF2: 5076..6707 ORF3: 6707..7471LOCUS MN453358 7530 bp RNA linear VRL 18-SEP-2019 DEFINITION Norovirus GII isolate Hu/PE/2011/GII.23[P23]/Loreto5841, complete genome. ACCESSION MN453358 VERSION MN453358.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7530) AUTHORS Chhabra,P., Browne,H., Kosek,M.N., Olortegui,M.P., Montmayeur,A.M., Tatusov,R.L. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (13-SEP-2019) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R10; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7530 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Loreto5841" /isolate="Hu/PE/2011/GII.23[P23]/Loreto5841" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /country="Peru" /collection_date="25-Jun-2011" /note="Amplicon sequencing: first 35 nt does represent primer sequence; genotype: GII.23[P23]" gene 5..5095 /gene="ORF1" CDS 5..5095 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QEP54808.1" /translation="MKMASNDASAATAGTTSTNSEIHNKDGNTTSNLFANMTVGIKKA LGARSKQSAPGAQTTNKNGRTTIPPIPPPPPNGEDIVIKYTKQEDTVSGVPTVSTADI SPLHDTAYSVPPLDQREKVDAKEPLTGSILEMWDGEIYHYGLYVERGQVLGVHKPPAA VSIARIELTPLSLYWRTVYTPPYLVAPDTLKKLHGETFPYAAFDNNCYSFCCWVLDLN DSWLNRKFVSRTTGFYRPYQEWNRKPLPTMDEGKLKKVANVFLCGLSGLFTRPIKDLI GKLKPLNILNIVTNCDWTFPGVVEAVILLAELFGIFWTPPDISAFVASLLGDYEMQGP EDIATEIVPVILGGIGMVLGFTKEKIGRLLSSAASSLRACREIGNYGIEVVKLVMKWF FPTKSEVNEMEMVRTIEDAVLDFEAIENNHMTALLKDKNSLATFLRALDVEEEKARRL STKSASPDIIGTINALLARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLAR DLAKKMAATLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVTDALRLQELAD TCPLTLNCDRIENKGKVFDSDTIIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSV DKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTPHSLIA RATGLLHERLDEFDLQGQELPVYNFDQNKVAAFRKLAADNKYGLMDTLRAGNKLKEVK SLDQFKEAVKDIRIKPCRIIYNSMAYDLDSNGSGRVNVKKVGDQKVQANNELNSALNK LRGARIRYYVKCFQEMVYSLLQIAGAAFVTSRIAQRMNVNKLWTKPEKQQEASAGPPT PPTEEWTITPMDTIQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYS IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRREERATLGLVTGS EIRKRNPDDFKPKGKLWADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLF ITSTHVIPQNMSEAFGVPISQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVV TILIKRPTGELMPLAARMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGC PYVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGN APKLSTKTKFWRSSNTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGK PPRPAVLEAAKETICNVLEQTIEPPQKWSYAQACASLDKTTSSGHPHHKKKNDNWNGE SFIGVLADQASRANLMYEQGKHMQPVYTGALKDELVKTSKIYETIKKRLLWGSDLGTM IRCARSFGGLMDEMKANCVNLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQ QRCVLGAALDIMVRYSAEPELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQW NSIAHWLLTLCAMSEVSGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLREYG LIPTRPDKTEGPLIIRESLEGLTFLRRDVCRDPAGWYGKLDQSSIMRQLYWTKGPNHE DPNETMIPHSQRPVQLMSLLGEAALHGPTFYKRVSKLVITELKEGGMDFYVPRQEPMF RWMRFSDLSTWEGDRNLAPESVNEDGVE" mat_peptide 5..1000 /gene="ORF1" /product="p48" mat_peptide 1001..2098 /gene="ORF1" /product="NTPase" mat_peptide 2099..2620 /gene="ORF1" /product="p22" mat_peptide 2621..3019 /gene="ORF1" /product="VPg" mat_peptide 3020..3562 /gene="ORF1" /product="Pro" mat_peptide 3563..5092 /gene="ORF1" /product="RdRp" gene 5076..6707 /gene="ORF2" CDS 5076..6707 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QEP54809.1" /translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ TNFIDPWIRGNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLSHLSRMYNGYAGG IDVQVIMAGNAFTAGKIIFAAIPPHFPVENLSPPQITMFPHIIVDVRTLEPINIPVPD VRNNFFHYNQNNESRMRLVAMLYTPLRSNGSAEDVFTVSCRVLTKPSADFEFNYLVPP TVESRTKPFTIPILTIGEMTNSRFPVPIDMLHTSPTENIVVQPQNGRCTIDGELLGTT QLITSNICSFRGSISGHEGNDDEHLWHFNITNPNGTPFDPTEDVPAPLGTPDFRGQLY GVISQRDREGTPSANNQKANRSHQGVISTISPKFVPKLGSVMIGTWTTDDIKNQPSKF APIGLNDDDNFKQWELPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYLPMKGGYGSP FIDCLVPQEWVAHFYQESAPAQTDVALIRYVNPETGRVLFEAKLHRQGFITVSKSGDS PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ" gene 6707..7471 /gene="ORF3" CDS 6707..7471 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QEP54810.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKIDFENNKYFQNA SFAHDKDMLNAQVEATKKLQADMIAIKQGVLVAGGFSPTDAARGAINAPMTRALDWNG TRYWAPNATSTTSMSGGFTGQVSHRTTPNFKTNQAPKPPPSSGSSVRSNSTQLTSLSS HSSGSSRSSGSTMVSSLPSSSRTRDWVNQQNLNLEPHLPGSLRTAFVTPPSSSASSSG TVSTVPKGVLDSWTSAFNTRRQPLFAHLRRRGESNV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgcgacc gctggcacaa ccagcacaaa 61 cagtgaaatt cacaacaaag atggaaatac aacatcaaac ctatttgcca acatgactgt 121 tggcataaag aaggctctag gggcgagatc aaaacagtcc gcccctggag cccaaacaac 181 taacaagaat gggagaacca ccatccctcc catacccccc ccacccccaa atggtgagga 241 catagtcatc aagtatacca aacaagagga tacagtcagt ggagtgccca ccgtctccac 301 tgcagacata tccccattgc atgacaccgc atatagtgtc ccccccttgg accagaggga 361 aaaggtggac gcaaaagaac ccctaactgg gtcaatactt gagatgtggg atggtgagat 421 ctaccattac gggctctatg tggagagagg gcaagtcctc ggtgtgcaca aaccaccagc 481 tgctgtgagc attgcacgca tcgagctgac ccccctctct ctatactgga gaacagttta 541 cacacctccc tacctggtag ctcctgacac ccttaagaag ctccatggtg agacattccc 601 ctacgcagca tttgataaca actgctactc attttgttgt tgggttctgg acctgaacga 661 ctcgtggctc aatagaaaat tcgtgtcaag gaccacaggc ttctacagac cctaccagga 721 gtggaacagg aaaccattgc caaccatgga cgaaggaaag cttaagaagg tggccaacgt 781 cttcctgtgt ggcttgtctg ggcttttcac caggcccatc aaagatctca taggcaaact 841 gaaaccactg aacattctta acattgtcac caattgtgat tggacgttcc cgggagtcgt 901 agaggcggtc atcctcctcg cagagctctt tgggatcttc tggacaccac cagacatatc 961 tgccttcgtc gcctctctgt taggtgacta tgagatgcaa ggccccgagg acattgcgac 1021 cgaaatagtc ccagtcattc taggtggtat tggcatggta cttggtttca ctaaagagaa 1081 gatcggccgg ttgctgagtt ccgcggcatc atcactcagg gcctgcaggg aaatcggcaa 1141 ctatgggata gaggtggtaa aattggtgat gaaatggttc tttccaacca aaagtgaggt 1201 caatgagatg gaaatggtca gaacaataga ggacgcagtg ctcgactttg aggcaattga 1261 aaacaatcac atgacagctc tactcaaaga caaaaatagt ctggccacct tcctcagggc 1321 actggatgtg gaagaagaga aagcgcggag attatcaacc aaatccgcgt cccccgacat 1381 aatcggcact ataaatgcac tcctggcgag aattgccgct gctaggtcac tggtgcacag 1441 ggctaaggaa gagatgtcat caaggatgcg tcctgttgtc atcatgatat ccggacgacc 1501 tgggataggg aaaacccatc tggcccgcga cctagctaag aagatggcgg ccactctgtc 1561 aggtgaccag agagtgggcc tggtcccaag gaatggtgtt gaccattggg atgcatacaa 1621 gggagaaagg atcgtcctgt gggatgatta cggtatgagc aaccccgtga cagacgccct 1681 ccgactccag gaactcgccg atacatgccc cctgacactc aactgtgata ggatagagaa 1741 taaaggaaag gtctttgaca gtgacaccat aatcatcact actaacctgg ccaacccggc 1801 ccccctggac tatgtgaact ttgaagcttg ctcacgccgc atagatttcc tcgtttatgc 1861 ggactctcct tcagttgata aggcaaagag agacttccca ggccaaccag acatgtggaa 1921 agacgccttc aaaccagatt tctcacacat aaagctacaa ctggcaccac agggaggatt 1981 tgacaagaat gggaacaccc cacatgggaa gggcgtcatg aaaacactaa ccccacactc 2041 cctcatagcc cgtgccactg gtttactcca tgagagatta gatgaatttg acttacaggg 2101 tcaagaattg ccagtctaca actttgacca gaacaaggtg gccgctttcc ggaaactagc 2161 ggccgacaac aagtatggtc tcatggacac tttgagggca ggcaacaaac tgaaggaggt 2221 taagagtcta gaccaattca aggaagcggt gaaagacatc cgcataaagc cttgcaggat 2281 aatctacaac tcaatggctt atgacctgga ttcaaatggg tcaggcagag tcaatgttaa 2341 gaaagtggga gaccaaaagg tccaggccaa caatgaactc aactccgcac tcaacaaact 2401 gcgcggggct agaatcagat actatgtgaa gtgcttccag gaaatggtct actccctcct 2461 ccagattgct ggtgcggcct tcgttacatc aagaatagca caaagaatga atgtcaacaa 2521 gctgtggaca aaaccagaaa aacaacagga ggcctctgca gggcccccca cccccccaac 2581 tgaagagtgg accataacac caatggacac gatccaggaa ggtaagaagg gcaagaacaa 2641 aagtggtagg ggtaagaaac acactgcatt ctctagtaag ggccttagtg atgaggagta 2701 tgatgagtac aagagaatca gggaggagcg ccaagggaag tactccatag aagaatacct 2761 ccaggacagg gaccggtact atgaagaatt ggccatagcc aaagcaacag aggaggactt 2821 ctgtgaagag gaggagatca agataaggca aagaattttc cgcccaacca ggaaacagcg 2881 tagggaggag agagccactc taggccttgt cacaggcagt gaaattagaa agaggaaccc 2941 cgatgatttc aaaccaaaag gaaaactgtg ggctgatgat gaccgtagtg tcaactacaa 3001 tgaaaggata gactttgaag ctcctcccag cctctggtcc agaatagtca acttcggttc 3061 gggttggggc ttctgggtct catcaaattt gttcatcacc tccacacacg tcatcccaca 3121 aaacatgtct gaagctttcg gagtgccaat aagccagatc caaatacata ggagtggaga 3181 gttctgcaaa atgaggttcc caaaggccat caggcccgat gtctctggca tgattcttga 3241 ggaaggcgcg cctgaaggca cggtggtgac catattgatc aaaagaccaa ctggtgaact 3301 catgccattg gcagctcgca tgggcaccca cgccaccatg aaaatacagg ggaggatgat 3361 tggaggtcaa atggggatgc ttctcacagg atccaacgcc aaaaacatgg accttggcac 3421 cgtgcctggt gactgtggct gcccttatgt ctacaaaaga ggcaatgatt gggtagttat 3481 cggggtgcac accgccgccg ccaggggtgg caacacggtg atctgtgcca ctcaggggcc 3541 agatggtgaa gccacacttg agggtggcga caaccatgga acctattgtg gcgcgccaat 3601 attaggacct ggaaacgccc cgaaactcag caccaagacc aaattctgga ggtcctccaa 3661 cactccgctt ccccctggca cttacgaacc agcctacctc ggtggtaagg acccaagggt 3721 caagggcggc ccatcactac aacaagtcat gagagagcaa ctcaagccct tcactgcccc 3781 acgtggaaaa ccaccaaggc cagcggtttt ggaggccgcc aaggaaacca tctgcaatgt 3841 gctggagcaa accattgaac cgccccaaaa gtggtcctat gcacaggctt gtgcttccct 3901 agacaaaaca acctcaagtg gccaccccca ccacaagaag aaaaatgaca attggaacgg 3961 ggaatccttc attggtgttc tggctgatca ggcttcaaga gcaaacctca tgtatgagca 4021 agggaaacac atgcagcctg tgtacacagg cgcgctcaaa gatgagcttg tcaaaaccag 4081 caagatctat gaaaccatta agaagagact cttgtggggt tcagacctcg gcacaatgat 4141 acgctgtgcc aggtcatttg gtggtctcat ggatgaaatg aaggcaaact gtgtgaacct 4201 accagtcaga gttggcatga atatgaatga agatggtccc ataatctttg aaaagcattc 4261 aaagtacaga tatcactatg atgctgacta ttccaggtgg gactcaacac aacagagatg 4321 tgtcctgggt gctgcacttg atataatggt tagatactca gccgaaccag aactggcaca 4381 aatcgtggct gaggacttgc tgtcgcctag cgtcatggac gttggcgact ttaaaatcac 4441 cataaatgag ggcttaccat cgggagtccc gtgcacatcc cagtggaact caatagctca 4501 ttggctgtta acactctgtg ccatgtcaga agtctcagga ctgtcaccag atgtggtaca 4561 gtcaaattca tgcttctcct tctatgggga tgatgaaata gtcagcactg acatcaaatt 4621 ggacccccaa aaactgactg acaagttgag agagtatggc ttaattccaa ctaggcccga 4681 caaaacagaa ggaccactta taatcagaga gagtctagaa ggcctaacat tcttaaggag 4741 ggatgtgtgc agagacccag cagggtggta tggcaaactt gaccaatcat caatcatgag 4801 acagttatac tggacaaaag gacccaacca tgaggacccc aatgaaacaa tgatcccaca 4861 ttcccagagg ccagtgcaat tgatgtccct gcttggtgag gcggccctac acggaccgac 4921 attctacaag agagttagca agttggtcat cactgaatta aaggaaggtg gaatggattt 4981 ctatgtgccc agacaagaac ctatgtttag atggatgaga ttctctgact tgagcacgtg 5041 ggagggcgat cgcaatctgg ctcccgaaag tgtgaatgaa gatggcgtcg aatgacgccg 5101 ctccatctaa tgatggtgca gccggtctcg taccagagat caacaacgag acaatggctt 5161 tggaaccagt ggcaggagga gcaattgcag ccccactaac tggacaaaca aatttcattg 5221 atccctggat tagaggtaat tatgtgcaag caccaaatgg tgaatttaca gtgtccccca 5281 gaaattcgcc cggtgaaatt ttgcttaatt tagaattagg ccctgaactc aacccattct 5341 tgtcccatct atctagaatg tacaatgggt atgctggcgg tattgatgtc caagtcatca 5401 tggcaggcaa tgccttcacc gctggtaaga tcatctttgc agcaatacct ccccatttcc 5461 ccgtggaaaa tcttagtccc cctcagatca ctatgttccc tcatattata gtggatgtca 5521 ggacccttga acccataaat atccctgtac cagatgttag gaacaacttc ttccattata 5581 atcaaaacaa tgagtctcgc atgagactgg tggccatgtt gtatacccct cttaggtcta 5641 acgggtctgc tgaagatgtt ttcacagtgt catgtagggt cttaacaaaa ccatctgcag 5701 actttgaatt taattatcta gtccccccaa ctgtagagtc aaggactaaa cccttcacaa 5761 taccaatact cacaattggg gaaatgacaa attcaagatt cccagtgcct attgacatgc 5821 tccatactag tccaacagaa aacattgttg ttcaaccaca aaatggcagg tgcaccatag 5881 atggtgagtt gcttggcacc actcaactga tcacttccaa tatctgttca ttcagaggat 5941 ccatctcagg gcatgaaggc aatgatgacg aacacctgtg gcacttcaac atcacaaacc 6001 ccaatggcac tccatttgac cccactgaag atgtgcctgc ccccctcgga accccagatt 6061 tcaggggtca attgtacggt gtcatctccc agcgagacag agagggaaca ccctcggcga 6121 acaatcagaa ggcaaacagg tcccaccagg gagtgatttc aacaatctca ccaaaatttg 6181 tccctaagtt aggttcagtc atgattggca catggactac tgatgatatc aagaaccagc 6241 catccaagtt cgccccaatt ggcctcaatg atgatgataa ttttaaacaa tgggaactgc 6301 caaattattc tggggcgctc accctcaaca tggggttggc acctagtgtt ttccccacct 6361 atcctggtga acaaatcctt ttcttccgct cctatctgcc aatgaaggga gggtacggta 6421 gtccatttat tgactgccta gtacctcaag aatgggtcgc tcacttctac caggagtcag 6481 cacccgcaca aacagatgtg gccctaatca ggtatgtaaa ccccgaaaca ggacgtgtcc 6541 ttttcgaggc caaattgcac agacaggggt tcattaccgt ttccaagagc ggcgacagcc 6601 ccatcaatgt gcctgccaat ggttatttta ggtttgattc ttgggttaat cagttttact 6661 ctcttgcccc catgggaact gggaacgggc gcagaaggat tcagtaatgg ctggagcttt 6721 tatagcagga ttggctggtg acatgctcac aaacaccgta gggtctctag ttaatgcagg 6781 agctaatgct attaatcaga aaattgattt tgagaataat aaatatttcc aaaatgcatc 6841 atttgcccat gataaggata tgctgaatgc acaggttgag gcgaccaaga aacttcaggc 6901 tgacatgatt gccatcaagc aaggggtatt agtcgcgggc ggcttttccc ctactgatgc 6961 agctcgggga gcaatcaacg cccccatgac aagagctcta gattggaatg gaacaaggta 7021 ctgggcgcca aatgccacct ccaccacttc aatgtcaggt ggcttcacag gacaggtttc 7081 gcacaggacc acaccaaatt ttaaaaccaa ccaggccccc aagcccccac ctagtagtgg 7141 gtcttcagta agatccaact caacccaact cactagtctg agctcccact cctctgggtc 7201 atcccgatcc agcggatcaa caatggttag ctctttgcct tcttctagca ggactaggga 7261 ttgggtcaat caacaaaatc ttaatttgga accacacttg cctgggtctc tcagaacagc 7321 ttttgtcact ccaccatcta gttcagcctc tagttcaggc acagtctcaa ccgtgcccaa 7381 gggtgttttg gactcctgga catctgcatt caacacacgc agacagccgc tttttgcaca 7441 ccttcgcaga aggggggagt caaatgttta gtgaaaagat tattttaaat ttgatttaat 7501 ttgaatttga ttggcatctt ttaaaaaaaa //