Typing tool
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Typing tool
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Complete norovirus genomes
| MN448477 | GI.3 | |
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| GI.P3 |
ORF1: 95..5404
ORF2: 5388..7025
ORF3: 7025..7672
LOCUS MN448477 7738 bp RNA linear VRL 18-SEP-2019
DEFINITION Norovirus GI isolate Hu/US/2013/GI.3[P3]/Westport0085, complete
genome.
ACCESSION MN448477
VERSION MN448477.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7738)
AUTHORS Barclay,L., Bryant,P., Montmayeur,A.M., Tatusov,R.L., Chhabra,P.
and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2019) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7738
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Westport0085"
/isolate="Hu/US/2013/GI.3[P3]/Westport0085"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="13-Aug-2013"
/note="Amplicon sequencing: first 35 nt does represent
primer sequence;
genotype: GI.3[P3]"
gene 95..5404
/gene="ORF1"
CDS 95..5404
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QEP29902.1"
/translation="MARIRGRIGPQRGETTTKIKDASMALDLLRRSQTPSPSRQESPP
KSQRDRPPRTASEVKKVMGWDVEPEHQESTAKAWCDLTQEEKEEIMRNNERLFDAGGI
TPSTLPSTFERADPVDSPSEQQPVTWSASGGVDIGVNDLTTVRGPFWNMCPLPPLDAR
NNGPAKEPLIGDMIEFYEGHIFHYAIYIGQGKTIGVHSPQAAFSIPRITIHPLVAWWR
VCYVPTNQQRLTYDQLRELENEPWPYASITNNCYEFCCRVMALDDTWLERRLVSTGKF
NHPTQDWSRDTPDFHQDSKLEMVRDAVLSAINGLVSQPFKNILSKIKPLNVLNLLSNC
DWTFMGVVELIVLLAELFDVFWTPPDISSFIASLLPEFHLQGPEDLARDLVPLILGGI
GLAIGFTRDKVTKVMKSAVDGLRSATQLGQYGLEIFSIIKKYFFGGDQTEKTLRGIED
AVIDMEVLSSTNVTQLVKDKKLARTYMNVLDNEEEKARKLSVRSADPHIVTSVNNLIS
RISMARSALAKAQAEMTSRPRPVVIMMCGPPGIGKTKAAEHLAGRLANEIRPGGKVGL
VPRESIDHWDGYHGEDVLLWDDYGMSKITEDCNKLQAIADTAPLSLNCDRIENKGMQF
SSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEIEQMRRTHPGDANAIKDLY
KRDYSHLKMELAPQGGFDSQGNTPFGKGIMKPTTLNRLLIQATALAMERQDEFRLQGA
VYNFDEDRVSAFTSLARANGLGLLSMATLGKRLRSVKSMEGLRNALVGYKIGECDIIW
NTRVYSIKSDGSIVTIKEKQTPTSPQYQAISTATLALSRLRAARALAYASCLQSAVLS
ILQVAGSALVVSRAVKRMFGTRTEQPMLEGKHREHNCRVHRAEAAGHGPIGHDGVIER
YGLCESEQEEEGEQTIELPTANKEGKNKGKTKKGRGRKSNFNAFSRRGLSDEEYEEYK
KIREEKSGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSGMRK
QRQEERRQLGLVSGSEIRKRKPIDWTPPKNDWSEDTRTVNYDEHISFEAPPSIWSRVV
KFGSGWGFWVSSTVFITTTHVIPPGAKEVFGEDLSNVAIHRVGEFTQFRFSKKMRPDL
TGMVLEEGCPEGTVCTIMIKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTGAN
AKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGNTVVCAIQGGDGEATLEGGG
QNKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLPPGTYEPAYLGGRDPRVEGGPSLQ
QVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNAIEQVMDTPVAWSYSDACMSLDKTTS
SGHPHHKKKNDDWNGSSFVRELGDQAAHANSMYELGKSMKPVYTAALKDELVKPDKVY
TKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEHSK
YKFHYDADYTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVI
SVKDGLPSGFPCTSQVNSINHWILTLCALSEVTGLSPDVIQSQSYFSFYGDDEIVSTD
IEFDPIRLTQILKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRLDR
NSIERQLWWTRGPNHEDPFETLVPHSQRKIQLISLLGEAALHGEKFYRKIAGRVIQEV
KEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
mat_peptide 95..1219
/gene="ORF1"
/product="p48"
mat_peptide 1220..2308
/gene="ORF1"
/product="NTPase"
mat_peptide 2309..2908
/gene="ORF1"
/product="p22"
mat_peptide 2909..3328
/gene="ORF1"
/product="VPg"
mat_peptide 3329..3871
/gene="ORF1"
/product="Pro"
mat_peptide 3872..5401
/gene="ORF1"
/product="RdRp"
gene 5388..7025
/gene="ORF2"
CDS 5388..7025
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QEP29903.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIVSCIPPGFVAQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPNLPLDTLSNSRVPSLIKSMMVSRDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKIRGSVFHANGGNGYNLTELDGSPYHAFESPAPIGFPDLGECDWH
MEASPTTQFNTGDVIKQINVKQESAFAPHLGTIQADGLSDVSVNTNMIAKLGWVSPVS
DGHKGDVDPWVIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIAHGTNGLSVPC
TIPQEFVTHFVNEQAPTRGEAALLHYLDPDTHRNLGEFKLYPDGFMTCVPNSSGTGPQ
TLPINGVFVFVSWVSRFYQLKPVGTAGPARRLGIRRS"
gene 7025..7672
/gene="ORF3"
CDS 7025..7672
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QEP29904.1"
/translation="MAQAILGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQKN
SFIHDKEMMGLQVEASTALLQNSLGTRYNMLTKAGMTSADAARMVVGAPTTRVIDWNG
TRIAAPMSTATTLRSGGFMTVPTVYRGGKNKQSIGGGFSNVNYDPSVSSSRTSQWVSS
QNSMRSTLEPFHPGALRTTWVTPPGSTSTSTISTVSTVPKFFNTERLPLFANRGK"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctat tgccgttgct gatgtcagca ataacaatgc
61 taacaccaac aatgataaca ttgggtcccg ccttatggcg aggatccgtg ggcgcatagg
121 cccacaacgt ggtgaaacaa ccacgaagat aaaagatgcc agtatggcgc ttgatctgct
181 gcgccggtca caaacacctt ccccatcccg acaggagagc ccccccaaga gccagaggga
241 ccgcccccct cggaccgctt ctgaggtaaa gaaagtgatg gggtgggatg tcgagccaga
301 acatcaggaa agcacagcta aggcatggtg cgacctcacg caagaagaga aggaggaaat
361 aatgcgtaac aatgaaaggc tcttcgacgc tggaggaatc accccatcaa ctttacctag
421 cacgtttgag agggccgacc cggttgacag ccccagtgaa caacaacctg tgacatggtc
481 tgctagtggt ggggtcgata ttggtgttaa tgatcttacc accgtccgtg gcccattttg
541 gaacatgtgc cccctcccgc cactggatgc ccggaataat ggccccgcta aggagcccct
601 cataggggac atgatagagt tttatgaagg tcacatattc cattatgcca tctatattgg
661 acaaggcaag accattgggg tccactcacc gcaagcggct ttctccatac caagaataac
721 catccatcct ctagtagcct ggtggcgcgt gtgctacgtt ccaactaatc agcagcgcct
781 cacttacgac caactcagag aactggagaa tgagccgtgg ccctacgctt ctatcacaaa
841 taattgctat gagttttgct gtagggtgat ggcacttgac gacacatggc ttgagaggag
901 gttggtcagt actggaaaat tcaaccaccc cacacaagat tggtcacgag ataccccgga
961 tttccaccaa gattcgaagc ttgagatggt aagagatgct gtgctatcag ctatcaacgg
1021 cctcgtatcg caacccttca aaaacatatt gtcaaagatc aaaccattaa atgttcttaa
1081 tctcttgtca aattgtgatt ggactttcat gggggttgta gaattgatcg tactcctagc
1141 ggagttgttt gatgtgttct ggactccacc agatatttca agcttcattg cctcactact
1201 acctgaattt cacctgcagg gcccagaaga cctagctagg gacttggttc ctctcattct
1261 aggtggcata ggcctagcta ttggctttac aagagataaa gtgacaaaag tgatgaagag
1321 cgccgtcgat gggctgcgat cggcaacaca gcttgggcag tacggactgg aaatattctc
1381 aatcattaag aaatatttct ttggcgggga ccaaacggaa aagaccttgc ggggtataga
1441 ggatgcagtg atagatatgg aggtgttgtc cagcaccaat gtgacacaat tggttaaaga
1501 taagaaattg gccagaactt acatgaatgt gctggataat gaagaggaaa aagcaaggaa
1561 actctcagtt cgtagtgccg atccacacat agtgacctca gtcaacaacc tgatatcacg
1621 aatatctatg gcaaggtcgg ccttagctaa agcccaagct gagatgacat ctcgcccacg
1681 cccggtggtc ataatgatgt gtggcccacc cggcatcgga aaaaccaagg ccgccgaaca
1741 cctggccggc cgactggcaa atgaaattag accgggaggt aaggttggac ttgtgccccg
1801 agagtctata gatcactggg atggatacca tggcgaggat gtcttactat gggatgacta
1861 tggcatgtca aaaataacag aggactgtaa caagttacaa gccatagctg acaccgcacc
1921 cctatcactt aattgtgaca ggatagagaa taaaggcatg caattttcct cagatgcaat
1981 aattataacc actaatgccc ctggtccggc cccagtggac ttcgtcaatt tgggccctgt
2041 gtgtaggcga gtggacttct tggtctattg ttctgcccct gaaattgagc aaatgagaag
2101 aacccatcct ggtgatgcca atgccattaa ggacctatat aaaagggact attcacacct
2161 aaaaatggaa ttggccccac aaggtggctt tgatagccag ggcaacacac catttggcaa
2221 gggcatcatg aaacccacga cccttaatag gctactcatt caggcaacag cattagctat
2281 ggagcggcag gatgaattcc ggctccaagg ggctgtctac aactttgatg aagacagggt
2341 gtccgccttt acaagtctgg cccgtgctaa tggcttgggg cttttaagta tggcaacatt
2401 aggtaaaaga ctcagaagtg tcaaatctat ggagggcctg cgtaatgcat tggtgggcta
2461 caaaatagga gagtgtgata taatttggaa cactagagtg tattcaatta aaagtgatgg
2521 tagtattgtc actatcaagg agaaacaaac cccaacttca cctcagtacc aggctattag
2581 cacagccact cttgcactct ctagactgcg ggccgctaga gctcttgcat acgcctcctg
2641 cctgcagagt gcagtgctgt caatacttca agtggctggc tctgccctgg tggtgagcag
2701 ggctgtgaaa cgcatgtttg gcacgcgcac tgaacagcct atgttagaag gcaaacacag
2761 agaacataac tgcagagtgc accgcgcaga ggcagctggc catggtccta ttgggcatga
2821 tggagtcatt gaacgctatg gcctttgtga gagtgaacaa gaagaagaag gcgagcaaac
2881 aattgagctg cccactgcca ataaagaggg taaaaacaag ggcaagacca aaaagggccg
2941 tggacgaaag tccaatttca atgctttctc aagacgtggc ctcagtgatg aagagtatga
3001 agaatacaaa aagatcagag aagaaaagag tggcaattac agcatccagg aatacctcga
3061 ggatcgccaa cgctatgagg aagaacttgc tgaagtgcag gctggtgggg atggtggaat
3121 tggtgagact gaggcagaga ttcgccatcg ggttttctat aaatcaaaat ccggcatgag
3181 aaaacaacgc caagaagagc ggcgtcagct gggactcgtc agcggttctg agatccgcaa
3241 gcgcaagccc atagactgga cccctcctaa gaatgattgg tcagaagaca ccagaactgt
3301 caactatgat gaacacatta gctttgaagc ccctccctca atttggagta gggtggtgaa
3361 gtttggtagt ggctggggtt tttgggtaag ctcaacagtg tttataacca caacccatgt
3421 cataccacct ggtgctaaag aagtctttgg tgaagacctt agcaatgtgg ccatccacag
3481 ggttggtgag ttcacccagt tccgtttctc caaaaagatg agacctgacc tcaccggtat
3541 ggtcctggaa gagggctgcc cagagggaac agtatgcacc ataatgatca agagagactc
3601 tggtgaactg ctgccgctcg ccgttcggat gggggcggtg gcgtcaatga agatccaagg
3661 caagcttatg catggacaat caggaatgtt gctcaccggc gctaatgcta aaggcatgga
3721 ccttggaact atacctggtg attgtggggc accctatgtc cacaagaggg gaaacgattg
3781 ggtagtctgt ggagtacatg cagccgccac aaaatcaggc aacactgtgg tgtgtgctat
3841 acagggtggc gatggtgaag ccacactgga gggcggcggt caaaacaagg gccactatgc
3901 agggcacccg atactaaggt atgggaatgg cccttcactg tcaaccaaga caaaattttg
3961 gaagtcaacc ccccagcctt tgccccctgg tacatatgag ccagcttacc ttggtggcag
4021 agaccccaga gttgaggggg gcccatcctt gcaacaagtg ttaagggacc agttaaaacc
4081 atttgccgag ccccgtggca gattgcctga agcgggcctg ttggaagctg cagttgaaac
4141 ggtcaccaat gcaattgaac aagttatgga cacaccggtg gcatggagct acagtgatgc
4201 ttgcatgtcc ctagataaga caaccagttc cggccacccc catcataaga agaaaaatga
4261 tgattggaat ggaagttcat ttgtgaggga gttgggcgac caggcggcgc atgctaacag
4321 catgtatgag cttggtaagt ccatgaaacc tgtgtacaca gcagccctga aggatgagct
4381 agtcaagcca gacaaggtgt acacgaaaat caaaaagaga ctactttggg gcgcggacct
4441 tggcaccgtc attcgcgctg ccagggcgtt tgggccattc tgtgaggcca taaaacccca
4501 tgtaatcaaa ttgcccatca aagtaggtat gaatgccata gaggatggtc ctttgattta
4561 tgcagagcat tctaagtata agtttcatta tgatgctgac tatacagcct gggactcaac
4621 acaaaacagg gagatcatga tggaatcctt taacattatg tgtaagctca cagccaaccc
4681 ctccttggcc gcggtagtgg cacaggatct actctcccca tctgaaatgg atgttggcga
4741 ctatgtgatc agtgtcaaag atggtctgcc atctggcttc ccatgcactt cacaggtgaa
4801 tagcattaac cactggatct taaccctatg tgcactgtca gaagtcaccg gcttgtcccc
4861 agatgtgata caatcacaat cctacttctc attttatggt gatgatgaaa tagtctcaac
4921 agacatagaa tttgacccaa taaggttgac acaaatactg aaggagtatg gtttgaagcc
4981 cacaagacct gacaaaactg atggcccaat tattgtcaga cagcaggtcg atggtctggt
5041 tttcctccga cgcaccatct ctaaagatgc cattggatac cagggacgac tcgaccgcaa
5101 ctctattgaa agacagcttt ggtggactcg cggaccaaac cacgaggacc catttgagac
5161 actggtccca cattcacaga gaaagatcca attaatatcc ctgttaggtg aagcagcact
5221 ccatggtgaa aagttctaca ggaaaatagc tggcagggtc attcaagaag tcaaggaggg
5281 ggggcttgaa atctacattc ctggttggca ggccatgttc cgctggatgc gattccatga
5341 tctaagtttg tggacaggag accgcgatct cctgcccgat tatgtaaatg atgatggcgt
5401 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggccagctg gtaccagagg
5461 caaatacagc tgagcctata tcaatggagc ccgtggctgg ggcagcaaca gctgccgcaa
5521 ccgctggcca agttaatatg attgacccct ggataatgaa taattatgtg caagcccctc
5581 aaggtgaatt caccatatcg cctaacaaca caccaggtga tattttgttt gatctgcaat
5641 taggccccca cctcaatcct ttcttgtccc atttagccca aatgtataat ggctgggttg
5701 gcaacatgaa agtgaaagtt ttattggctg gcaatgcctt cacagctggt aaaataattg
5761 ttagttgcat accccctggc tttgttgcac aaaacatttc tattgctcag gctactatgt
5821 tcccccatgt catagctgat gttagggttt tggaacccat tgaggtgcca ctggaggatg
5881 tgaggaatgt gttgttccac aacaacgaca acacaccaac catgaggttg gtgtgcatgc
5941 tctacacccc cttgcgagcc agtggcagct cgtctggaac tgaccccttt gtgattgctg
6001 ggcgtgtttt gacatgccca agtcctgatt ttagcttttt gtttttggtc ccccccaatg
6061 tagaacaaaa gactaaaccc tttagtgtcc caaatcttcc attggatact ctttcaaatt
6121 cgagagtccc ttctctaatc aaatcaatga tggtgtccag ggaccatggg cagatggttc
6181 agtttcaaaa tggtagggtt accctagatg ggcaactgca aggcaccacg cccacatcag
6241 ccagccagct gtgcaaaatc aggggcagtg tcttccatgc caatggtgga aatgggtaca
6301 acctaacaga actggatggg agcccatacc atgcatttga aagccccgca ccaatagggt
6361 ttccagatct aggtgagtgt gattggcaca tggaggcttc ccctaccacc caattcaata
6421 ctggtgatgt tataaaacaa attaatgtca aacaagaatc agcatttgcc ccccaccttg
6481 gtaccataca ggcagacggc ctaagtgatg tgagtgtcaa caccaacatg atagccaaat
6541 tagggtgggt gtcacccgtc agtgatggac acaaaggaga tgtcgatccg tgggtcatcc
6601 cacgctatgg gtcgactttg actgaggccg cccaattagc ccctccaata taccccccag
6661 gttttggtga ggccattgtg tttttcatgt cagactttcc tattgcccat ggtaccaatg
6721 gcttgagtgt gccttgcacc ataccccaag aatttgtcac ccattttgtc aatgaacagg
6781 cccctactag aggggaagca gccctgctac attatttgga tcctgatact catagaaatc
6841 ttggtgaatt taaattatat cctgatggct tcatgacgtg tgtgcctaac tccagtggca
6901 ctggtccaca aactctccca attaatggtg tctttgtttt tgtgtcctgg gtttccagat
6961 tctatcaatt aaagcctgtg ggaacagccg gcccggctcg taggcttggg attaggagat
7021 cataatggct caagccatac ttggagccat agcagcaaca gcagctggca gtgctgttgg
7081 tgctggtata caagctggaa ccgaagctgc cctacaacac caaaggttcc aacaagattt
7141 gaccttacaa aagaattcct ttattcatga taaagagatg atgggcctac aggttgaggc
7201 ttcgactgca ctcctccaaa acagtttggg tacaagatac aatatgttaa ccaaagcagg
7261 gatgacatct gcagatgcgg cacgcatggt tgtgggggcg cctacaactc gtgtcattga
7321 ttggaacggg actaggatcg ccgcacctat gtcaactgcg acgacactta ggtctggtgg
7381 tttcatgacc gtaccaactg tttatagggg tggcaagaat aagcaatcaa ttggtggtgg
7441 tttttctaat gtaaattatg atccctcagt ttcctcctct cggacttctc agtgggtttc
7501 ttctcagaat tcaatgcgtt ccactttgga accattccac ccaggagccc taagaaccac
7561 atgggttact ccacctgggt caacttctac ttcaacaatt tcaacagtct ctactgtgcc
7621 aaaattcttt aatacagaaa ggttaccctt attcgcgaac aggggtaaat gattttgtaa
7681 tatgaattag tgggcatcat attcaatttg gaatcaatta gatatttaga ttggcaga
//