Typing tool
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Typing tool
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Complete norovirus genomes
| MN416944 | GII.6 | |
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| GII.P7 |
ORF1: 1..1782
ORF2: 1763..3406
ORF3: 3406..4185
LOCUS MN416944 4205 bp RNA linear VRL 31-DEC-2019
DEFINITION Norovirus GII isolate G19_043 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION MN416944
VERSION MN416944.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4205)
AUTHORS Strubbia,S., Schaeffer,J. and Le Guyader,F.S.
TITLE Metagenomic to detect norovirus and Human enteric viruses in
oysters: impact on hexamer selection and targeted capture-based
enrichment
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4205)
AUTHORS Strubbia,S., Schaeffer,J. and Le Guyader,F.S.
TITLE Direct Submission
JOURNAL Submitted (06-SEP-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. v3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4205
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G19_043"
/isolation_source="digestive tissue"
/host="shellfish"
/db_xref="taxon:122929"
/country="France"
/collection_date="11-Nov-2018"
/note="genotype: GIIP7, GII.6"
gene <1..1782
/gene="ORF1"
CDS <1..1782
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QEM24853.1"
/translation="VRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCP
YIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKA
PKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKP
PRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGEP
FTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYRKIKKRLLWGSDLGTMI
RCARAFGGLMDSMKASCITLPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQ
RSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWN
SIAHWILTLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGL
VPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHEN
PYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFR
WMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..249
/gene="ORF1"
/product="Pro"
mat_peptide 250..1779
/gene="ORF1"
/product="RdRp"
gene 1763..3406
/gene="ORF2"
CDS 1763..3406
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QEM24854.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEGIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLIGQTSRSSDSTDSAPRRRDHPLHVQLKNLDGTQYDPTDEVPAVLG
AIDFKGTVFGVASQRDVSGQQVGATRAHEVHINTTDPRYTPKLGSILMHSESDDFVTG
QPVRFTPIGMGDNDWHQWELPDYSGHLTLNMNLAPAVAPAFPGERILFFRSIVPSAGG
YGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRNQ"
gene 3406..4185
/gene="ORF3"
CDS 3406..4185
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QEM24855.1"
/translation="MASAFLAGLAGDVITNGVGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHKSPAPPQHAVSSKSRLQNDSASVYSSPSSVSSQS
THSTVLSAGTGSSRSISTSTATPTLSRTSDWVRGQNERLGPFMDGALQTAFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQV"
ORIGIN
1 gtgaggatgg gcacgcatgc atccatgaaa atacagggta gaaccgtcgg tggtcagatg
61 ggaatgcttc tcacaggggc aaatgcgaag aacatggatc ttggcaccgg ccctggtgac
121 tgcggttgtc cttacatcta caaacgtggc aatgatatag ttgtcgcggg tgtccacacc
181 gcagcagccc ggggaggcaa cactgtcata tgtgccactc aagggcaaga tggggaggca
241 gtccttgagg gaaatgagaa ccttggaact tactgcggtg ccccaatttt gggtccaggc
301 aaggcgccca aacttagcac aaagaccaag ttctggcgtt cgtcaccaga cgctctgccg
361 ccaggcactt atgagcctgc ctacttggga ggcaaggacc ctagagtaga aaagggacca
421 tccctgcagc aagtcatgag agaccaacta aaacctttca cagaacccag gggcaagcca
481 cctagacccg cagtcttaga agaagccaaa aagacagtga tgaatgttct agaacaaacc
541 attgatcctg ctaagccatg gacctactcc caagcatgcg cttcactgga caagaccacc
601 tccagtggta gccctcatca tgtcaggaaa aatgaccatt ggaatgggga accctttact
661 ggcccccttg cagaccaagc atccaaagcc aacctcatgt acgagcaggc caaacatgtg
721 cagcccgtgt acacggccgc actcaaagat gagctagtca agactgacaa gatctacagg
781 aagataaaga aaaggctctt atgggggtcg gatcttggta caatgatcag gtgtgccagg
841 gcctttggtg gtctcatgga tagcatgaag gcaagttgca taaccctccc atgtagggtg
901 ggaatgaaca tgaatgaaga tggtcccatc atatttgata aacactctaa gtataggtac
961 cattatgatg ctgactattc caggtgggac tcaacccagc aaaggagcat tctctcggcc
1021 gctatggaag tgatggtgcg gttctctgcc gaaccagagc tggcacaagt ggttgcagag
1081 gacctcctgg cacccagcca actagatgtt ggcgactttg tcatctcagt tcaggagggt
1141 ctgccgtcag gggtaccatg tacatcacaa tggaattcaa tagcacattg gatcctaact
1201 ttgagtgcaa tggcagaagt gtcgggtctc tcaccagatg ttattcaagc ccactcctgt
1261 ttctcatttt acggtgatga tgagatcgtc agcactgaca tcaaccttga tcccatgaag
1321 ttgacacaga aactcagaga gtatggccta gtccctactc gacctgacaa aactgagggt
1381 ccccttgtaa taactgaaga tctcaccggc ctaacgttcc tgcgtaggtc aattgcacgg
1441 gatccagctg ggtggtttgg aaaattagac caagactcaa tcctcaggca attgtactgg
1501 acaaggggcc ccaatcatga gaacccatat gagagcatgg tcccccattc ccagcgggcc
1561 acacagctta tggcccttct cggtgaggct tcactgcatg gcccccagtt ttacaagaag
1621 gtcagcaaga tggtcattaa cgaaatcaaa agtggtggtc tggaattcta tgtgcccaga
1681 caagaggcca tgttcagatg gatgagattc tctgacctca gcacatggga gggcgatcgc
1741 aatcttgctc ccgagggtgt gaatgaagat ggcgtcgaat gacgctgctc catcgaatga
1801 tggtgctgcc aacctcgtac cagaggccaa caatgaggtt atggcacttg agccggtggt
1861 gggggcttca atcgcagctc ctgtcgtcgg ccaacaaaac ataattgacc cctggattag
1921 agaaaatttt gttcaagcac cacagggtga gttcactgtc tcgccgagga actcgcctgg
1981 tgagatgcta ttaaatcttg aattaggccc agaactcaac ccttacctaa gtcacctgtc
2041 ccgtatgtat aatgggtatg ctggtggcat gcaggttcag gtggtcctag ctgggaatgc
2101 gttcacagct gggaaaatca tctttgccgc tgtgccacca catttccccg tggaaaacat
2161 cagtgcagct caaataacta tgtgccccca tgtgattgtt gatgtgagac aacttgagcc
2221 agtactccta ccccttcctg acataaggaa taggttcttt cattacaatc aggagaacac
2281 tccccggatg agactagtgg ctatgcttta cacccccctg agggccaact ctggtgaaga
2341 tgtgtttact gtctcttgta gggtcttaac ccgtcctgcc cctgattttg aatttacttt
2401 cttggtacca ccaactgttg aatcaaagac taagcctttt acactaccca tattaactct
2461 tggtgagcta tctaattcca gattcccagc cccaatagat atgttgtaca ctgatccaaa
2521 tgagggaatt gtagtccaac cacaaaatgg taggtgcact cttgatggca ctctgcaagg
2581 caccacacaa ctggtcccca cccaaatttg tgctttcaga ggcacactaa ttggccaaac
2641 atcaagatct tcagactcaa ccgactcagc ccctcggagg agggatcacc cactccatgt
2701 tcaattaaag aaccttgatg gcacgcagta tgaccctact gatgaagtgc cagcagtcct
2761 cggtgccatt gatttcaagg ggactgtctt tggggtggcc agtcagaggg acgtgtcagg
2821 acaacaggtt ggagcaactc gagcccatga agtgcacatc aacacaaccg atcctaggta
2881 tacaccaaag ctagggtcca ttctcatgca ctcagagtcg gacgacttcg tgactggaca
2941 gccggtccgc ttcacaccca taggaatggg cgacaacgac tggcatcagt gggagctgcc
3001 cgactattct ggacacctaa ccctaaacat gaaccttgcc ccagcagttg ctcctgcatt
3061 cccgggtgag aggattcttt tcttcaggtc aattgtcccg tctgctggtg gctacggctc
3121 tgggcaaata gattgcctca taccacagga gtgggttcag catttctacc aagaagctgc
3181 accatcccaa tctgccgtgg cactcatcag gtatgtcaac cctgacacag gcagaaacat
3241 ctttgaggct aaattgcaca gggaaggctt catcaccgtg gctaattctg gcaacaaccc
3301 cattgttgtc ccccctaatg ggtattttag gtttgaggct tgggtgaatc aattttacac
3361 tttgaccccc atgggaactg gtcaggggcg taggaggaat caataatggc tagtgctttt
3421 cttgcaggtc ttgctggtga cgtcataaca aatggcgttg gatctctaat aaatgctgga
3481 gctaatgcag ttaatcagaa agttgaatat gattttaata aacagcttca aatggcatca
3541 tttaaacatg ataaagagat gttgcaatca caagtgctgg caaccaagca gttgcagcag
3601 gagatgatga acattaggca gggggtgttg accgctggcg gcttctcccc cgcggatgct
3661 gctagagggg ctgtcaatgc cccaatgaca aagattctgg actggaatgg caccaggtat
3721 tgggcaccaa acagcatgaa aaccacaagt tattcaggac agttttctag cagccctgtt
3781 cataagtctc ctgctcctcc ccagcatgct gtttcatcaa agagtagatt gcaaaatgat
3841 tctgctagtg tatatagttc tccttcttct gtttcttcac aatcaactca ttcaacagtg
3901 ctgtcagcag gaactgggtc ctccaggtcc atctccacat ctacagctac ccccaccttg
3961 tctaggacca gcgactgggt taggggacag aacgagaggc ttggcccgtt catggatggt
4021 gctctccaaa ctgcctttgt cacacctcca tcgagcaaag cttcttcaaa tggtacggtc
4081 tcaaccgttc ccaaagctgt tttggactcc tggactccta tgtttaacac acataggcag
4141 cctctcttcg cccatctacg caggcgaggg gagtcacaag tttagtgaaa agagtgatta
4201 ggttt
//