Typing tool
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Typing tool
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Complete norovirus genomes
| MN394546 | GII.17 | |
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| GII.P17 |
ORF1: 1..5079
ORF2: 5060..6682
ORF3: 6682..7428
LOCUS MN394546 7428 bp RNA linear VRL 04-SEP-2019
DEFINITION Norovirus GII isolate 38 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION MN394546
VERSION MN394546.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7428)
AUTHORS Huang,Z., Xiao,S. and Ou,X.
TITLE Mixed and recombinant norovirus infection in a outbreak in Changsha
city, China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7428)
AUTHORS Huang,Z., Xiao,S. and Ou,X.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2019) Microbiological laboratory, Changsha Center
for Disease Control and Prevention, beside the liuyang river
bridge, No. 509, wanjiali second north Road, Changsha, Hunan
410000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7428
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="38"
/isolation_source="anal swab"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Changsha"
/collection_date="01-Apr-2019"
/note="genotype: GII.P17-GII.17/38/Changsha/2019/CHN"
gene <1..5079
/gene="ORF1"
CDS <1..5079
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QEJ87984.1"
/translation="AVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPPGETK
QIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAYS
VPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEIT
PLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMI
QRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNIL
NILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVP
VVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANE
LAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDI
VGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVAST
LSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCD
RIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPG
QPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHER
MDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAI
KNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRYY
VKCFQEATYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDED
DLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEY
LQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRK
RNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITST
HVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILI
KRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIY
KRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGPGNAPKL
STKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNP
NVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTG
KLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCA
RAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAV
LEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIA
HWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPT
RPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSE
TMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMR
FSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..969
/gene="ORF1"
/product="p48"
mat_peptide 970..2067
/gene="ORF1"
/product="NTPase"
mat_peptide 2068..2604
/gene="ORF1"
/product="p22"
mat_peptide 2605..3003
/gene="ORF1"
/product="VPg"
mat_peptide 3004..3546
/gene="ORF1"
/product="Pro"
mat_peptide 3547..5076
/gene="ORF1"
/product="RdRp"
gene 5060..6682
/gene="ORF2"
CDS 5060..6682
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QEJ87985.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6682..>7428
/gene="ORF3"
CDS 6682..>7428
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QEJ87986.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFA"
ORIGIN
1 gccgttgctg gcaaaaacaa caacaacgac aaggaaaaat cttcaagtga cagcttgttt
61 gctaatatgt ctgtcacttt taagaaagcc ctcggggcgc ggtctaaaca accgcccccg
121 ggagaaacaa aacaaataca aaaaccacca aggccaccga caccggaatt ggtgaagaga
181 atacctccac ccccacccaa tggcgaggat gaaccaggga tagtgtacaa ggtgggagag
241 ggtgtgtctg ggctgcccga cctaacaact gtggtacaac ctgacgcaca aaacacagct
301 tatagtgttc ccccacttag ccagagagaa gtcggcgaag ctaaagaacc gctgcctggc
361 tccattctgg aaatgtggga tggtgagatc taccactatg ggctgtatgt tgagcggggg
421 catgtgctcg gagtacacaa accacctgct gcaataagcc ttgccaaaat tgaaataaca
481 ccgctgtctc tctactggag agtggtctac actccccagt atttgataga tccaggaact
541 cttaagaact tgagtggaga gactttccca tacacggcct ttgacaacaa ctgttatgcc
601 ttctgttgtt gggtcctaga cctcaacgac tcctggctta gcaggagaat gatccaaaga
661 acaactggat ttttcaaacc ttatcaggat tggaacagaa aacccttacc aaccatggat
721 gaaccgaaaa tcaagaaggc cgcgaatgct gtcctatgcg ctctctcctc actcttcact
781 agacccatta aggacatcat tgggaagctt agaccactga acattcttaa tatactggca
841 acctgcgatt ggacttttgc aggcatagtg gaatccttga tccttcttgc tgaactcttt
901 ggggtgttct ggacaccccc agatgtgtct gcgatgattg ctcccttact cggtgactac
961 gagatgcaag gccccgaaga cctggccgtg gaacttgtgc ccgtagtgat gggaggaata
1021 ggtttggtgt tgggattcac caaagaaaag atcggcaaga tgctttcatc agctgcgacc
1081 acccttaggg cctgcaagga tctaggatct tatggattgg agatactcaa attggtcatg
1141 aagtggttct tccccaagaa ggaggaggct aacgaactag ccatggtgag ggccattgag
1201 gatgcagtcc tggatttgga ggcaatagaa aacaatcaca tgaccaccct tctcaaggat
1261 aaagacagcc tggccacata catgaggact cttgacttgg aagaagagaa agcaaggaaa
1321 ctgtcaacca aatcggcgtc acctgacatc gtgggtacaa taaacgcatt gttggctagg
1381 atagcagccg ccaggtcact ggtccacaag gctaaggagg agctctcgag cagacagaga
1441 cctgttgttg taatgatatc aggtagacca ggtataggaa agacccatct ggccagagag
1501 ctagccaaga aagttgcgtc aacactgtca ggcgaccaaa ggattggact ggtacctagg
1561 aatggcgtcg accattggga cgcctacaag ggagaaaggg tggtcctgtg ggatgattat
1621 ggtatgagca accctataca ggacgcactg aggctccaag aattggctga cacctgtcct
1681 ctgaccctaa attgtgatag gattgaaaac aaaggaaaag tgttcgacag tgatgccata
1741 attataacaa ccaaccttgc aaacccagca ccactagact atgtcaactt tgaggcctgc
1801 tctagacgca tagacttctt ggtgtatgca gacgcacctg acattgagaa ggctaaacgt
1861 gacttccctg gccaaccaga tatgtggaaa gaccatttca gaccagactt ctcacacatt
1921 aaacttcagc tggcaccaca gggaggtttt gacaaaaatg gcaacacccc acatggcaaa
1981 ggtgtggtaa agtccctgac aattggttct ctgatcgcca gggcctccgg cttgctccac
2041 gagagaatgg atgaattcga gctccaaggt tctgacctgc caaccttcaa ttttgaccgc
2101 aacaaagtcg ccgccttcag acaattagca gctgaaaaca aatatggtct tatggacaca
2161 ttgagggtcg gcaaccaact gaaaagtgtt aagaccctgg atgagctgaa gcaggccata
2221 aagaacatca gtatcaagaa gtgtcagata gtgtataatg gatgcaccta taccatggaa
2281 tctgatggga ggggcaaggt tgtggttgaa aaggtacaaa acgcaacagt tcaaaccaac
2341 aatgaacttg taggggcgct ccaccacctg agatctgcaa ggataagata ctatgttaaa
2401 tgtttccaag aagccactta ctctctactc caaattgctg gtgcagcctt tgtcacctca
2461 cgcatcgtga ggcgcatgaa catatcaaac ctctggtcga agccacccat cgaggagggt
2521 gatgagcctg aagacagagg aggatgcccc aagcccaggg atgaagatga cctcactatt
2581 gactctagag acattaaagt ggaagggaag aagggcaaga acaagtctgg ccggggcaag
2641 aaacacacag ccttctcttc caagggcctc agtgatgaag agtacgatga gtacaagaga
2701 atcagagagg agaggaatgg caaatactca atagaggaat acctccaaga tagggacaga
2761 tactatgaag agcttgccat tgctaaggcc actgaggagg acttctgtga agaggaggag
2821 atcaaaatcc gtcagagaat cttccgaccc accaggaagc agcggaaaga ggaaagggcc
2881 acgcttgggc ttgtcacagg atcggaaatc agaaagagga atccagatga ctttaaacca
2941 aaaggaaaat tgtgggctga tgacaacagg agcgtggatt acaatgagag gatagatttt
3001 gaggctcccc cgagtgtttg gtctaggata gtcaactttg gcacaggctg gggattctgg
3061 gtttctccaa gtctctttat aacttcaaca catgtcatac caaaaggaat cactgaggcc
3121 tttggagtgc ccataaacca aatccaaatc cacaaatctg gagaattttg ccgcttgcgg
3181 tttccaaagc caattagacc agacgtgagt gggatgatct tggaagaggg cgcccctgaa
3241 ggcactgttg tgtctattct catcaaaagg acaacagggg agctgatgcc tcttgcagtc
3301 agaatgggga ctcatgccac aatgaaaatc caaggtagaa cggtgggtgg tcagatgggt
3361 atgcttctca ctggctcaaa tgctaaaggc atggatctag gcacaacgcc aggtgactgc
3421 ggatgtccat acatatacaa aaggggcaat gaccttgtgg tcattggggt gcacactgca
3481 gcagctcgtg gaggcaacac ggtcatatgt gccacacagg gaagtgaggg tgaagccact
3541 cttgaaggag atgacaacaa gggtacctat tgtggagccc ccattttggg acctggcaat
3601 gcaccaaaat tgagcacaaa gacaaaattc tggagatcct ctaacgcacc gcttccccca
3661 ggtacttatg aaccagcata ccttggtggg agagacccgc gcgtgaaggg aggcccatct
3721 ctgcagcaag ttatgagaga tcaactcaaa ccttttacag agcccagagg gaagccacca
3781 aacccaaatg tcttagagtc agcaaagaag actatcatca atgttctgga acaaaccatt
3841 gacccccctc aaaagtggtc atatgcccaa gcttgtgcat ccctcgacaa gacaacctcc
3901 agtggatacc cgcaccacgt ccggaagaat gactactgga gtggtgaatc cttcacagga
3961 aaacttgcag atcaggcttc aaaagcaaat ctcatgtatg aggaaggcaa gcacatgcaa
4021 ccagtttaca ccgcagcact caaagacgag ctcgtgaaaa ctgacaaaat ttatggcaaa
4081 atcaagaaaa gactcctgtg gggctctgac ctctccacaa tgattcgatg cgccagagca
4141 tttggtggtc tcatggatga attcaaagca aattgtatta cactccctat cagagttggt
4201 atgaatatga atgaagatgg tcccataata tttgagaaac actccaggta caggtaccac
4261 tatgatgctg attactcccg ctgggactcc acacaacagc gggcagtgct ggaagcggca
4321 cttgaaatca tggtgagatt ttctgctgag ccacagctgg cacaaatagt ggcagaggac
4381 ctgctgtcac caagtgtggt cgatgtgggc gatttcaaaa ttgctatcaa tgaaggccta
4441 ccatctggcg tgccttgcac ctcacaatgg aattctattg cccactggtt acttaccttg
4501 tgtgcccttt ctgaagtgac aggattaggt cctgacatca tacaagctaa ctccatgtac
4561 tctttctatg gtgatgatga gattgtgagc acagacataa aattggaccc agagaaattg
4621 accgcaaagc tcaaagaata tggccttaaa cccactcggc ccgacaaaac tgaggggccg
4681 ttggtgatta gtgaggacct gaatgggttg actttcctcc gccgaacagt cacccgtgat
4741 ccagcaggtt ggtttggaaa gttggaccaa aactccatcc tcaggcagtt gtactggaca
4801 agaggaccca accatgaaga ccccagtgag accatgatac cacacgcaca aagacctgtg
4861 cagctcatgg cactactagg agaatcctcc ctacacggac cctcatttta cagcaaggtt
4921 agcaagttag tcatatctga acttaaagag ggaggaatgg atttttatgt gcccagacaa
4981 gagtcaatgt tcagatggat gaggttctca gatctaagca catgggaggg cgatcgcaat
5041 ctggctccca attttgtgaa tgaagatggc gtcgaatgac gccgctccat ctaatgatgg
5101 tgctgctggt ctcgtaccag agggcaacaa cgagaccctt cccctagaac cagttgcggg
5161 cgcagctata gccgcacccg tcactggcca aaataatata attgacccct ggattagaac
5221 aaattttgtg caagcaccaa atggagagtt cacagtgtca cccagaaact ctcctggaga
5281 aattttatta aatttagagt tgggccctga tttgaaccct tatttggctc atttgtcaag
5341 gatgtacaat gggtatgctg gtggagtgga agttcaggtt ctcctggcag ggaacgcgtt
5401 cactgccgga aagatcctct tcgccgccgt cccgccaaat ttcccagtgg aattcttaag
5461 cccagcccag atcacaatgc tcccacattt aatagtagat gttaggactc ttgaaccaat
5521 tatgatccca ctccctgatg ttaggaatac attcttccat tatagtaacc agcctaacag
5581 ccgcatgaga ttagtggcta tgctctatac cccacttaga tctaatggct caggtgatga
5641 tgtctttact gtctcttgca gggttttgac taggcctact cctgattttg agttcactta
5701 tttagtgcca ccttctgtcg aatctaaaac taagcctttt tccttaccta ttttaaccct
5761 ttctgagctc acaaattcga ggtttccagt ccccatcgat tcgcttttta ccgcccagaa
5821 taatgtgttg caggtgcagt gtcaaaatgg caggtgtaca cttgatggtg agttacaagg
5881 cacaacccag ttgctcccaa ctggcatctg tgcattcaga ggacgggtga cagcacaaat
5941 taaccaacgt gacaggtggc acatgcaact gcaaaacctc aatggtacaa catatgaccc
6001 aactgatgat gtgccagccc cgctgggtac acctgacttc aagggcgtcg tgtttggaat
6061 ggtaagccaa agaaatgtgg gtaatgatgc gcctggctca accagggccc aacaggcgtg
6121 ggtttcaacc tatagccccc aatttgtccc caaattaggt tctgtcaatc ttagaattag
6181 taataatgat gatttccaat tccagccaac aaaattcaca ccagtgggcg tcaatgatga
6241 cgatgatgat cacccgttca gacagtggga actaccaaac tattcagggg agcttacctt
6301 gaatatgaat cttgcccccc cagttgctcc aaattttcct ggtgaacaat tgttattctt
6361 cagatctttc gtgccatgct caggaggtta caaccaaggt attatagatt gtcttattcc
6421 ccaagaatgg atccaacatt tctatcagga atcagcaccc tcccagtcag acgtggccct
6481 aatcaggtat gtcaaccccg atacgggacg tacactgttt gaagcaaaat tgcacagatc
6541 tggttacatt actgtggctc actctggaga ctatcctctt gttgttccgg ctaatggaca
6601 ctttagattt gattcttggg taaatcagtt ttactcactc gccccaatgg gaactgggaa
6661 tgggcgaagg agggctcagt aatggctggg gctttcattg caggattggc aggcgacatg
6721 ctcacgtcat ctgtgggctc ccttgtgaac gcaggggcaa acgccatcaa ccaaaagata
6781 gactttgaaa acaacaaaca actccagtct gcttcctttc agcatgataa agagatgctc
6841 caagcgcagg tgagggcaac caagcagctg caatctgaaa tgatagccct aaaacagggg
6901 gttttggccg caggcggctt ttcccccact gatgcagcaa ggggatccat tggtgcaccc
6961 atgacaaagg tgcttgactg gtctggcact cgatactggg cgcccaattc cacaaagaca
7021 actggctatt cgggacaatt tacctcttca cctgtgcata tgtctagccc aaatgctcca
7081 caatcaaaac ctgcaaagcc taggtctcta gctccttcct cttcttctag tagtgtctat
7141 agtatgtata ctcaatctac tcatttgaca tctggctctt ctagtaatgc ttcttctgcc
7201 tccacaaaat tgacaaattt aagctctggc tcctctcaaa acagaacagc agaatgggta
7261 aatcaacaga gaagtcttag ccctttcatg agtggcgcac ttaacatctc acatgtcacg
7321 ccaccctcaa gtagggcttc cagttctggg acggtctcga ccgtgcccaa ggaagttttg
7381 gactcctgga cgtctgcgtt taacacacac agacagccgc tcttcgca
//