Typing tool
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Typing tool
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Complete norovirus genomes
| MN394544 | GII.2 | |
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| GII.P16 |
ORF1: 1..5067
ORF2: 5048..6676
ORF3: 6676..7455
LOCUS MN394544 7463 bp RNA linear VRL 04-SEP-2019
DEFINITION Norovirus GII isolate 36 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MN394544
VERSION MN394544.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7463)
AUTHORS Huang,Z., Xiao,S. and Ou,X.
TITLE Mixed and recombinant norovirus infection in a outbreak in Changsha
city, China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7463)
AUTHORS Huang,Z., Xiao,S. and Ou,X.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2019) Microbiological laboratory, Changsha Center
for Disease Control and Prevention, beside the liuyang river
bridge, No. 509, wanjiali second north Road, Changsha, Hunan
410000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7463
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="36"
/isolation_source="anal swab"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China: Changsha"
/collection_date="01-Apr-2019"
/note="genotype: GII.P16-GII.2/36/Changsha/2019/CHN"
gene <1..5067
/gene="ORF1"
CDS <1..5067
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QEJ87978.1"
/translation="VACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPAPRDKPQK
PPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANTAFSVP
PLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARVELTPL
SLYWRVVYTPQYLISPETLRRLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQR
TTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLNILNI
LATCDWTFAGIVESLILFAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVV
MGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELA
MVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDMEEEKARRLSTKSASPDIVG
TINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKVASTLT
GDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTLNCDRI
ENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQP
DMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERMD
EFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEELKQAIRN
VTIKRCQIIYGGSTYDLESDGKGKVLVEKVRNTSVQTNNELAGALHHLKHARIRYYVK
CVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNEPETKEEAPKSEDDEFII
SSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDR
DRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPD
DFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITSTHVIP
AGITEAFGVPINQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLIKRPT
GELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGN
DYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLSTKT
KFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPSVLE
AAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGETFTGKLAD
QASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARSFG
GLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAA
LEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLL
TLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDK
TEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPSETMIP
HSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDL
STWEGDRNLAPNFVNEDGVE"
mat_peptide <1..963
/gene="ORF1"
/product="p48"
mat_peptide 964..2061
/gene="ORF1"
/product="NTPase"
mat_peptide 2062..2592
/gene="ORF1"
/product="p22"
mat_peptide 2593..2991
/gene="ORF1"
/product="VPg"
mat_peptide 2992..3534
/gene="ORF1"
/product="Pro"
mat_peptide 3535..5064
/gene="ORF1"
/product="RdRp"
gene 5048..6676
/gene="ORF2"
CDS 5048..6676
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QEJ87979.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNVIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLSRMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPASIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGTPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPGYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6676..7455
/gene="ORF3"
CDS 6676..7455
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QEJ87980.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRVEFDFNQRLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQTLDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFVTQSSRPTLTTTT
GSSHGTTSSNSTRSTSLSQSTVSRAASRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASNGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gttgcttgca acaacaacaa cgacaaagaa aaatcttcag gtgaaggctt attcacaaat
61 atgtcttcca ccttaaagaa agccctcggg gctaggccca aacagcctgc cccgagagac
121 aaaccacaaa agcccccaag accaccaact cccgagttgg tcaagaggat accccctcct
181 ccacctaacg gtgaagaaga agaagagcca gtcattaggt atgaggttaa gagtgggatc
241 tctggcctgc ccgagctcac aacagtcccc caaccggacg tggccaacac agcattcagt
301 gttccaccac tgagcttgag agaaaacagg gaggccaagg agccgctaac aggggcaata
361 ttagagatgt gggatggaga gatataccac tatggtctgt acgtggagaa aggcttagtg
421 ttgggtgtac acaaaccacc tgcagccata agcatggcaa gagtggagct gacgccgttg
481 tcattgtact ggcgtgtggt gtacactccc caatacctca tctcccctga aaccctcagg
541 aggctcaacg gagagacatt cccttacacc gcctttgaca acaactgcta tgccttttgc
601 tgctgggtgt tagacctcaa tgactcatgg cttagcagga ggatggtgca aagaacaacg
661 ggcttcttca gaccttacca agagtggaac agaaaacccc tgcctaccat ggatgactcc
721 aaaatcaaga aagtagcaaa tatattcctg tgttcattgt ccacattatt caccagaccc
781 ataaaagacc tcataggaaa aattaaacca ttgaacatat tgaatatcct ggcaacgtgt
841 gactggactt ttgccggaat agtggagtct ctgatattat ttgctgaact cttcggagtt
901 ttctggacac ccccagatgt gtctgctatg atcgctccct tactcgggga ctacgagttg
961 caagggccag aagacctcgc cgttgaactc gtacctgtgg taatgggggg gattggtttg
1021 gtgttgggat tcaccaaaga gaaaattggc aaaatgttgt cctcagcagc atcaacactc
1081 agggcttgca aagatcttgg tgcctatggc ttagagatac tcaaattggt catgaagtgg
1141 ttcttcccaa agaaagagga ggccaatgag ctagctatgg tgagggccat agaggatgct
1201 gtactagacc ttgaggcaat agaaaataac cacatgacag ccctgttgaa agacaaagac
1261 agcttagcaa catacatgaa aacactggac atggaggagg agaaagccag gaggttgtcc
1321 acaaaatctg catcccctga catagttggg acaatcaacg ccctgctggc tcgaatagca
1381 gcggccaggt cattagtcca cagggccaag gaagagctat ctagtaggat aaggccagta
1441 gttgttatga tatctggcaa gccaggaata ggaaaaactc atctggccag ggaggtggca
1501 agaaaggtgg catccactct cacaggggat caaagagtcg gactcatacc acgaaacggt
1561 gtggaccatt gggatgcata caaaggtgag agagtcgtgc tgtgggacga ctatggcatg
1621 agtaacccta ttcatgatgc tcttcgcata caagaattgg ctgatacgtg tccccttacc
1681 ttaaattgtg acagaattga aaataaggga aaagtttttg acagtgaagt cataataatt
1741 acaacaaacc ttgccaatcc agccccactt gattatgtca actttgaggc ctgttccagg
1801 agaattgatt tcctggtgta cgctgaggca ccagaagtag aaaaggcaaa acgggacttt
1861 cctggtcagc cagatatgtg gaaggacgct ttcaagccgg acttttcaca catcaagcta
1921 cagcttgcac cccagggagg ttttgacaag aatggcaaca ccccacatgg gaaaggagtg
1981 atgaagaccc tcactaccgg ttctctgatt gcccgtgcat caggcctact gcatgagagg
2041 atggatgaat ttgaactcca aggccccaca atcaccacct tcaatttcga tcgaaacaga
2101 atcacggcat tcagacaatt ggctgcagaa aacaagtatg ggttggtgga taccatgaaa
2161 gttggcaatc aattaaaagg agtgaaaacc atggaagaac tcaaacaagc aatcaggaat
2221 gtgaccatca agaggtgcca gatcatctac ggtggttcca cgtatgacct tgaatctgat
2281 ggcaagggca aagttttggt ggaaaaggtc aggaacacct ctgtgcagac caataacgag
2341 ttggctgggg ctctgcacca tctcaaacat gcccgaatca ggtactatgt caaatgtgtg
2401 caagaagcag tctactccat catacagatt gccggcgctg cgtttgtcac cacgcgcatc
2461 gcacgccgca tgaacataca agaactctgg tcgaagccac aactagatca aaatgaacca
2521 gagactaagg aagaggcccc caagtcagaa gatgacgagt tcatcatatc ttctaaggac
2581 atcaaggagg aaggaaagaa gggcaaaaac aaaactggcc gtggcaagaa acacactgca
2641 ttctccagca agggcttgag cgatgaggag tatgacgagt acaagaggat aagagaggag
2701 agaaatggga agtattctat agaggagtat cttcaagata gagacaggta ctatgaggag
2761 ctcgccattg ccaaggccac ggaagaagac ttctgtgaag aggaggagat caaaatccgt
2821 cagagaattt tccgtcccac caggaaacaa agaaaggaag agagggccac attaggacta
2881 gtaacaggtt cagaaatcag aaaaagaaac cctgatgact tcaaacccaa agggaagctg
2941 tgggccgatg acaacaggag tgttgattac aatgagaaac tggactttga ggccccccca
3001 agcatatggt ctaggattgt tagctttggc tctggctggg gcttctgggt gtcaccaagc
3061 cttttcataa catcaactca tgtaattccc gcaggcataa cagaagcatt tggagtcccc
3121 atcaaccaaa ttcagatcca caaatcaggc gaattttgcc gattcagatt cccaaaacca
3181 attagaccag atgtgacagg aatgatcttg gaagaaggtg cgcctgaggg caccgtggca
3241 actgtgctca tcaaacgccc caccggagag ctcatgcctc ttgcagccag aatgggaaca
3301 cacgcaacca tgaaaattca aggccgcatg gttggcggac agatgggtat gttgctcact
3361 ggatcaaatg ctaaaggaat ggacttggga acaactcctg gtgactgtgg ctgtccttac
3421 atctataaaa ggggcaatga ctatatagtc attggggtgc acactgcagc agcccgtggt
3481 ggaaacactg tcatctgtgc cacacaggga agtgagggtg aggcaactct tgagggtgga
3541 gatgacaaag gaacatactg tggggcaccc attctaggcc ctgggggtgc accaaaattg
3601 agcaccaaaa ccaaattttg gaggtcatcg aacacgcccc ttccaccagg gacatatgag
3661 cctgcctacc tcggtggccg tgatccgcgt gttaagggtg ggccttcctt gcagcaggtg
3721 atgagagacc agttgaagcc attcactgaa cccaggggca aacctccaag accaagtgta
3781 ttggaagcag ccaaacaaac catcatcaat gtcctcgaac aaaccctgga ccctccacaa
3841 aaatggacat acgcacaggc ttgtgcctca cttgacaaaa ccacctccag cggacacccc
3901 catcacgtcc gaaagaatga attctggaat ggtgagacct tcactggtaa actggcagac
3961 caagcatcaa aagcaaacct gatgtttgag gaagggaaac acatgacacc agtgtacaca
4021 gcagcactca aggacgagct agtcaaaact gagaaaatct atggaaagat caagaagaga
4081 ctgctctggg gctctgactt gtccaccatg atccggtgcg ctaggtcatt tggtgggctt
4141 atggacgaga tgaaggcgca ctgcatatca ctcccagtcc gagttggcat gaatatgaat
4201 gaagatggcc caataatatt tgagaaacat tccagatata aatatcacta tgatgcagac
4261 tactctcgtt gggattcaac acaacagagg gcagttctag cagcagcctt ggaaatcatg
4321 gtcagattct ctgcagaacc acaattggca caaatagtcg ctgaggacct gctggcccct
4381 agtgtagtag atgtaggaga ctttaaaatt acaataaatg aagggctccc ttctggtgtg
4441 ccatgcacct ctcaatggaa ctccatcgca cactggctgc taactctctg tgccttgtct
4501 gaagtcacca aactgtcccc tgacatcata caggcaaatt ccatgttctc attttacggt
4561 gatgacgaga ttgtcagtac cgacataaaa ttggaccctg aacagttaac tgccaaattg
4621 aaggagtacg gcctgaaacc aacccgccca gacaaaaccg agggacccct gattatcagt
4681 gaagatttga acggtctcac tttcctccga aggacggtga ctcgtgaccc agctggctgg
4741 tttggaaaac tggaccaaag ctcaattttg aggcagatgt actggactag aggaccaaat
4801 catgaagacc ccagtgagac aatgataccc cattcccaaa gacccataca gctcatggca
4861 ctgcttggtg aagcctctct tcacggaccc tctttctaca gtaaaatcag taagttggtc
4921 ataactgaac tcaaagaagg tgggatggac ttttacgtgc caaggcagga acccatgttc
4981 aggtggatga ggttttctga cttgagcacg tgggagggcg atcgcaatct ggctcccaat
5041 tttgtgaatg aagatggcgt cgaatgacgc cgctccatct actgatggtg cagccggcct
5101 cgtgccagaa agtaacaatg aggtcatggc tcttgaaccc gtggctggtg ccgccttggc
5161 agccccggtc accggtcaaa caaatgttat agacccttgg attagagcaa attttgtcca
5221 ggcccccaat ggtgaattta cagtctctcc ccgaaatgcc cctggtgaag tgctactgag
5281 tctagagttg ggtccagaat taaatcctta tctggcacat ttatcaagaa tgtacaatgg
5341 gtatgccggt gggatggagg tgcaggtcat gttggctggg aacgcgttca cagccggcaa
5401 attggttttc gccgccgtgc caccccactt cccggttgaa aaccttagcc cacagcaaat
5461 caccatgttc cctcatgtga tcatagatgt gagaaccttg gaacctgttt tattaccact
5521 ccctgatgtt aggaataact tctttcatta taaccagaaa gatgatccca agatgagaat
5581 tgtggctatg ctttataccc ccctcaggtc taatggttca ggtgatgatg tgtttacagt
5641 ttcctgtaga gtgttgacta gaccttcccc tgactttgac ttcacatacc tggtgccacc
5701 aacagtggag tctaaaacaa agccattcac cctcccaatc ctcacacttg gggaactttc
5761 caattctagg ttcccagcgt ccatagacca gatgtatacc agccccaatg aaattatatc
5821 agtgcagtgt caaaatggta ggtgcacact ggacggggag ctccaaggga caacacaact
5881 ccaagtcagt ggcatttgtg ctttcaaagg tgaggtgact gcccacttgc atgacaatga
5941 tcacctatat aatgtcacca tcacaaactt gaatgggacc ccttttgatc cctccgagga
6001 catccctgcc cctttgggtg tgcctgactt ccagggaaga gtttttggta tcatctccca
6061 aagagataaa cacaatagtc ctgggcataa tgaaccagca aacaggggac acgacgctgt
6121 ggtccccact tacacagcac agtacactcc aaaacttggg caaattcaaa ttggcacatg
6181 gcaaactgac gaccttacag tcaaccaacc agtcaaattt accccagttg gactcaatga
6241 cactgaacac tttaaccaat gggtggtccc tgggtatgct ggtgccctaa acctcaatac
6301 aaatcttgcc ccttctgttg ctccagtatt tccaggagag cgcctgctct tcttcagatc
6361 atacattccc ctcaagggcg gttatggaaa cccagccatt gattgcctac taccacaaga
6421 gtgggtgcaa cacttctatc aggaagcagc cccttcaatg agtgaggtgg ccctcgtcag
6481 atacatcaac ccggatactg gtcgggcact gtttgaggct aagctccaca gagctggttt
6541 tatgacagtc tcgagcaaca ccagtgcccc ggtggttgtg cctgccaacg ggtacttcag
6601 atttgattct tgggtgaacc aattttactc tctcgccccc atgggaactg ggaatgggcg
6661 tagaagggtt caataatggc tggagctttt gtagctggtc ttgcagggga cgtgctcagc
6721 aatgggctta gttcattaat caatgcaggt gctaatgcaa taaatcagag ggtagaattc
6781 gattttaatc aaaggttgca gcaaaattct tttaatcatg ataaggagat gttgcaggct
6841 cagattcagg caactaagca gctgcaggca gacatgatgg ctataaaaca aggggtcctg
6901 accgctggcg gcttttcccc tgctgatgca gccagaggtg ctgtaaacgc gcccatgaca
6961 cagacgctgg attggaatgg cacaaggtat tgggcaccaa actccatgag gaccacatct
7021 tattctggaa aattcacatc aaccgcccca gtgaggcagg ctgacttcca gcacacccaa
7081 agccggcctt cgagtggctc ctctgtgtct tcctttgtca ctcagtcttc aaggccaact
7141 ctgaccacaa ccactggttc ctcacatggc acaacctcat caaactcaac tcgcagcaca
7201 agcctctccc aatcaacggt ctccagagct gcatctagga ctggtgagtg ggttagagat
7261 caaaatagaa atttggaacc ctacatgcat ggtgccttac agacagcctt tgtcacccca
7321 ccttccagca gggcatctaa cgggacagtc tcaaccgtcc ctaaaggtgt tttggactcc
7381 tggacacctg cgtttaacac ccgcaggcag ccgctttttg cacacctccg taagaggggg
7441 gagtcacaag cttagtgaaa agg
//