Typing tool
|
Complete norovirus genomes
MN394542 | GII.2 | ||
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GII.P16 |
ORF1: 1..5100 ORF2: 5081..6709 ORF3: 6709..7488LOCUS MN394542 7532 bp RNA linear VRL 04-SEP-2019 DEFINITION Norovirus GII isolate 34 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION MN394542 VERSION MN394542.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7532) AUTHORS Huang,Z., Xiao,S. and Ou,X. TITLE Mixed and recombinant norovirus infection in a outbreak in Changsha city, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 7532) AUTHORS Huang,Z., Xiao,S. and Ou,X. TITLE Direct Submission JOURNAL Submitted (30-AUG-2019) Microbiological laboratory, Changsha Center for Disease Control and Prevention, beside the liuyang river bridge, No. 509, wanjiali second north Road, Changsha, Hunan 410000, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7532 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="34" /isolation_source="anal swab" /host="Homo sapiens" /db_xref="taxon:122929" /country="China: Changsha" /collection_date="01-Apr-2019" /note="genotype: GII.P16-GII.2/34/Changsha/2019/CHN" gene 1..5100 /gene="ORF1" CDS 1..5100 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QEJ87972.1" /translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP KQPAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA ISMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEVFPYTAFDNNCYAFCCWVLDLN DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI GKIKPLNILNILATCDWTFAGIVESLILFAELFGVFWTPPDVSAMIAPLLGDYELQGP EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAR EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVK TMEELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE APKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP SLFITSTHVIPAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFW NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" mat_peptide 1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2625 /gene="ORF1" /product="p22" mat_peptide 2626..3024 /gene="ORF1" /product="VPg" mat_peptide 3025..3567 /gene="ORF1" /product="Pro" mat_peptide 3568..5097 /gene="ORF1" /product="RdRp" gene 5081..6709 /gene="ORF2" CDS 5081..6709 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QEJ87973.1" /translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG VISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGSPA IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6709..7488 /gene="ORF3" CDS 6709..7488 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QEJ87974.1" /translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSSATQSSRPTLTTTT GSSHGTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA" ORIGIN 1 atgaagatgg cgtctaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaaa 61 gaaaaatctt caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc 121 ggggctaggc ccaaacagcc tgccccgaga gacaaaccac aaaagccccc aagaccacca 181 actcccgagt tggtcaagag gataccccct cctccaccta atggcgaaga agaagaagaa 241 ccagtcatta ggtatgaggt taagagtggg atctctggcc tacccgagct cacaacagtc 301 ccccaaccgg acgtggccaa cacagcattc agtgttccac cactgagctt gagagaaaat 361 agggaggcca aggagccgct aacaggggca atattagaga tgtgggatgg agagatatac 421 cactatggcc tgtacgtgga gaaaggctta gtgttgggtg tgcacaaacc acctgcagcc 481 ataagcatgg caagagtgga gctgacgccg ttgtcattgt actggcgtgt ggtgtacact 541 ccccaatacc tcatctcccc tgaaaccctc aggaggctca acggagaggt attcccttac 601 accgcctttg acaacaactg ctatgccttt tgctgctggg tgttagacct caatgactca 661 tggcttagca ggaggatggt acaaagaaca acgggcttct tcagacctta ccaagagtgg 721 aacagaaaac ccctgcctac catggatgac tccaaaatta agaaggtagc aaatatattc 781 ctatgttcat tgtccacatt attcactaga cccataaaag accttatagg aaaaatcaaa 841 ccattgaaca tattgaatat cctggcaacg tgtgactgga cttttgccgg aatagtggag 901 tctctgatat tatttgctga actcttcgga gttttctgga cacccccaga tgtgtctgct 961 atgatcgctc ccttactcgg ggactacgag ttgcaagggc cagaagacct cgccgttgaa 1021 ctcgtacctg tggtaatggg ggggattggt ttggtgttgg gattcaccaa agagaaaatt 1081 ggcaaaatgt tgtcctcagc agcatcaaca ctcagggctt gtaaagatct tggtgcctat 1141 ggcttagaga tactcaaatt ggtcatgaag tggttcttcc caaagaaaga ggaggccaat 1201 gagctagcta tggtgagggc catagaggat gctgtactag accttgaggc aatagaaaat 1261 aaccacatga caaccctgtt gaaagataaa gacagcttag caacatacat gaaaacactg 1321 gacatggagg aggagaaagc caggaggttg tctacaaaat ctgcatcccc tgacatagtt 1381 gggacaatca acgccctgct ggctcgaata gcagcggcca ggtcattagt ccacagggcc 1441 aaagaagagc tatctagcag gatgaggccg gtagttgtta tgatatctgg caaaccagga 1501 ataggcaaga ctcatctggc cagggaggtg gcaagaaaag tggcatccac tctcacaggg 1561 gatcaaagag tcggactcat accacgaaac ggtgtggacc attgggatgc atacaaaggt 1621 gagagagtcg tgctgtggga cgactatggc atgagtaacc ctatccatga tgctcttcgc 1681 atacaagaac tggctgatac gtgtcccctc accttgaatt gtgacagaat cgaaaataag 1741 ggaaaagttt ttgacagtga agtcataata attacaacaa accttgccaa tccagcccca 1801 cttgattatg tcaactttga ggcctgttcc aggaggattg atttcctggt gtacgctgag 1861 gcaccagaag tagaaaaggc aaaacgggac tttcctggtc aaccagatat gtggaaggac 1921 gctttcaagc cggacttttc gcacatcaag ctacagcttg caccccaagg cggctttgac 1981 aagaatggca acaccccaca tgggaaagga gtgatgaaga ccctcactac cggttctctg 2041 attgcccgtg catcaggcct actgcatgag aggatggatg aatttgaact ccaaggtccc 2101 acaatcacca ccttcaattt cgaccggaac agaatcacgg cattcagaca attggctgca 2161 gaaaacaagt atgggttggt ggataccatg agagttggca atcaattaaa aggggtgaaa 2221 accatggaag aactcaaaca agcaatcagg aatgtgacca tcaagaggtg ccagatcatc 2281 tacggtggtt ccacgtatga ccttgaatct gacggcaagg gcaaagtttt ggtggaaaag 2341 gtcaagaaca cctctgtaca gaccaataac gagttggctg gggctctgca ccatctcaaa 2401 catgcccgaa tcaggtacta tgtcaaatgt gtgcaagaag cagtctattc catcatacag 2461 attgccggcg ctgcgtttgt caccacgcgc attgcacgcc gcatgaacat acaagaactc 2521 tggtcgaagc cacaactaga tcaaaatgaa tcagagacta aggaagaggc ccccaagtca 2581 gaagatgacg agttcattat atcttctaag gacatcaagg aagaaggaaa gaagggcaaa 2641 aacaaaactg gccgtggcaa gaaacacact gcattctcca gcaagggctt gagcgatgag 2701 gagtatgacg agtacaagag gataagagaa gagagaaacg gaaagtactc tatagaggag 2761 tatcttcaag acagagacag gtactatgag gagctcgcca ttgccaaggc cacggaagaa 2821 gacttctgtg aagaggagga aatcaaaatc cgtcagagaa ttttccgtcc caccaggaaa 2881 cagagaaagg aagagagggc cacattaggg ctagtaacag gttcagaaat cagaaaaaga 2941 aaccctgatg acttcaaacc caaagggaag ctgtgggccg atgacaacag gagtgttgac 3001 tacaatgaga aactggactt tgaggccccc ccaagcatat ggtctaggat tgtgagcttc 3061 ggttctggct ggggtttctg ggtgtcacca agccttttca taacatcaac tcatgtaatc 3121 cccgcaggta taacagaagc atttggagtc tccatcaaac aaattcagat ccacaaatca 3181 ggcgaatttt gccgattcag attcccaaaa ccaattagac cagatgtgac aggaatgatc 3241 ttggaagaag gtgcgcctga gggcaccgtg gcaactgtgc tcatcaaacg ccccaccgga 3301 gagcttatgc ctcttgcagc cagaatggga acacacgcaa ccatgaaaat tcaaggccgc 3361 atggttggcg gacagatggg tatgctgctc actggatcaa atgctaaagg gatggactta 3421 ggaacaactc ctggtgattg tggctgtcct tacatctaca aaaggggcaa tgactatata 3481 gtcattgggg tgcacactgc agcagcccgt ggtggaaaca ctgtcatctg tgccacacag 3541 ggaagtgagg gtgaggcaac tcttgagggt ggagatgaca aaggaacata ctgtggggca 3601 cccattctag gccctggggg tgcgccaaaa ttgagcacca aaaccaaatt ttggagatca 3661 tcgaacacgc cccttccacc agggacatat gagcctgcct atctcggtgg ccgcgatccg 3721 cgtgttaagg gtgggccttc cctgcagcag gtgatgagag accagttgaa gccattcact 3781 gaacccaggg gcaaacctcc aagaccaagt gtgttggaag cagccaaaca aaccatcatc 3841 aatgtcctcg aacaaaccct ggaccctcca caaaaatgga catacgcaca ggcgtgtgcc 3901 tcacttgaca aaaccacctc cagcgggcac ccccatcacg tccgaaagaa tgaattctgg 3961 aatggtgaga ccttcactgg taaactggca gaccaagcat caaaagcaaa cctaatgttt 4021 gaggaaggga aacacatgac accagtgtac acagcagcac ttaaggacga gctagtcaag 4081 actgagaaaa tctatggaaa gatcaagaag agactgctct ggggctctga cttgtccacc 4141 atgatccggt gcgctaggtc atttggtggg cttatggacg agatgaaggc acactgcata 4201 tcactcccag tccgagttgg catgaatatg aatgaagatg gcccaataat atttgagaaa 4261 cattccagat acaaatacca ctatgatgca gactactctc gttgggattc aacacaacag 4321 agggcagtgc tagcagcagc cttggaaatc atggtcagat tctctgcaga accacaattg 4381 gcacaaatag tcgctgagga tctgctggcc cctagtgtag tagatgtagg agactttaaa 4441 attacaataa atgaagggct tccttctggt gtgccatgca cttctcaatg gaactccatc 4501 gcacactggc tgctaactct ctgtgccttg tctgaagtca ccaaactgtc ccctgatatc 4561 atacaggcaa actccatgtt ctcattttac ggtgatgacg agattgtcag caccgacata 4621 aaattggacc ctgaacagtt aaccgccaaa ttgaaggagt acggcctaaa accaacccgc 4681 ccagacaaaa ccgagggacc cctgatcatc agtgaagatt tgaacggtct cactttcctc 4741 cgaaggacgg tgactcgtga cccagctggc tggtttggaa aactggacca aagctcaata 4801 ttgaggcaga tgtactggac tagaggacca aatcatgagg accccaacga gacaatgata 4861 ccccattctc aaagacccat acagctcatg gcactgcttg gtgaagcctc tcttcacgga 4921 ccctctttct acagtaaaat cagtaaattg gtcataactg aactcaaaga aggtgggatg 4981 gacttttacg tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc 5041 acgtgggagg gcgatcgcaa tctggctccc aatttcgtga atgaagatgg cgtcgaatga 5101 cgccgctcca tctactgatg gtgcagccgg cctcgtgcca gaaagtaaca atgaggtcat 5161 ggctcttgaa cccgtggctg gtgccgcctt ggcagccccg gtcaccggtc aaacaaatat 5221 tatagaccct tggattagag caaattttgt ccaggccccc aatggtgaat tcacagtctc 5281 tccccgaaat gcccctggtg aagtgctact gaatctagag ttgggtccag aattaaatcc 5341 ttatctggca catttagcaa gaatgtacaa tgggtatgcc ggtgggatgg aggtgcaggt 5401 catgttggct gggaacgcgt tcacagccgg caagttggtc ttcgccgccg tgccacccca 5461 cttcccggtt gaaaacctta gcccacagca aataaccatg ttccctcatg tgatcataga 5521 tgtgagaacc ctggaacctg ttttgttacc actccctgat gttaggaaca acttcttcca 5581 ttataaccag aaagatgatc ccaagatgag aattgtggct atgctttata cccccctcag 5641 gtctaatggt tcaggtgatg atgtgtttac agtctcctgt agagtgttga ctagaccttc 5701 ccctgacttt gacttcacat acctggtgcc accaacagtg gagtctaaaa caaagccttt 5761 caccctccca atcctcacac ttggggaact ttccaattct aggttcccag tgtccataga 5821 ccagatgtat accagcccta atgaaattat atcagtgcag tgtcaaaatg gtaggtgcac 5881 actggacggg gagctccaag ggacaacaca actccaagtt agcggcattt gtgctttcaa 5941 aggtgaagtg accgcccact tgcatgacaa tgatcaccta tataatgtca ccatcacaaa 6001 cttgaatggg tccccttttg atccctccga ggatatccct gcccctctgg gtgtgcctga 6061 cttccaggga agggtttttg gtgtcatctc ccaaagagat aaacataata gtcctgggca 6121 caatgaacca gcaaacaggg gacacgacgc tgtggtccct acttacacag cacagtacac 6181 tccaaaactt ggacaaattc aaattggcac atggcaaact gacgacctta cagtcaacca 6241 accagttaaa tttaccccag ttggactcaa tgacactgaa cacttcaacc aatgggtggt 6301 ccctaggtat gctggtgccc taaacctcaa tacaaacctt gccccttctg ttgctccagt 6361 attcccagga gagcgcctgc tcttcttcag atcatacatt cccctcaagg gcggttatgg 6421 aagcccagcc attgattgcc tactaccaca agagtgggtg caacacttct atcaggaagc 6481 agccccttca atgagtgagg tggccctcgt cagatacatc aacccggaca ctggtcgggc 6541 actgtttgag gccaagctcc acagagctgg ttttatgaca gtctcgagca acaccagtgc 6601 cccggtggtt gtgcctgcca acgggtactt cagatttgat tcttgggtga accaatttta 6661 ttctctcgcc cccatgggaa ctgggaatgg gcgtaggagg gttcaataat ggctggagct 6721 tttgtagctg gtcttgcagg ggacgtgctc agcaatgggc ttagttcatt aatcaatgca 6781 ggtgctaatg caataaatca gagggcagaa tttgatttta atcagaagtt gcagcaaaat 6841 tcttttaatc atgataagga gatgttgcag gctcagattc aggcaactaa gcagctgcag 6901 gcagacatga tggctataaa acaaggggtc ttgaccgctg gcggcttttc ccctgctgat 6961 gcagccagag gtgctgtgaa cgcgcccatg acacaggcgc tggattggaa tggcacaagg 7021 tattgggcac caaactccat gaggaccacg tcttattctg gaaaattcac atcaaccgcc 7081 ccagtgaggc aggctgactt ccagcacacc caaagccggc cttcgagtgg ctcctctgtg 7141 tcttcctctg ccactcagtc ttcaaggcca actctgacca caaccactgg ttcctcacat 7201 ggcacagcct catcaaattc aactcgcagt acaagcctct cccaatcaac ggtctccaga 7261 gctacatcta ggactggtga gtgggttaga gatcaaaata gaaatttgga accctacatg 7321 catggtgcct tacagacagc ctttgtcacc ccaccttcca gcagggcatc tgatgggaca 7381 gtctcaaccg tccctaaagg tgttttggac tcctggacac ctgcgtttaa cacccgcagg 7441 cagccgcttt ttgcacacct ccgtaagagg ggggagtcac aagcttagtg aaaaggtgaa 7501 aatttattta ggatgaattg attttacctt tt //