Typing tool
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Typing tool
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Complete norovirus genomes
| MN308013 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5018
ORF2: 4999..6621
ORF3: 6621..7427
LOCUS MN308013 7427 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 131_GII.Pe_GII.4_Araguaina nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION MN308013
VERSION MN308013.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7427)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7427)
AUTHORS Tinker,R.J., da-Costa,A.C., Leal,E.S., Tahmasebi,R.,
Milagres,F.A.P., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Teles,Md.A.R., Sayao-Lobato,M.C.A.B., Chagas,R.T.,
Santos-Abrao,Md.F.N., Alves-Soares,C.V.D., Cunha,M.S., Deng,X.,
Delwart,E., Sabino,E.C. and Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (13-AUG-2019) Institute of Tropical Medicine, University
of Sao Paulo, Av Dr Eneas de Carvalho Aguiar 470, Sao Paulo, Sao
Paulo 05403000, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7427
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="131_GII.Pe_GII.4_Araguaina"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="10-Jun-2015"
/note="genotype: GII.Pe_GII.4"
gene <1..5018
/gene="ORF1"
CDS <1..5018
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="QED42427.1"
/translation="SNMAVTFKRPLGARPKQPPPKEIPPRPPRPPTPELGKKIPPPPP
NGEDELVVSYSAKDGVSGLPELTTVRQPEETNTAFSVPPLNQRESRDAKEPLTGTIIE
MWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELTPLSLFWRPVYTPQYLISPYTLR
SLHCDSFPYTAFYNSCYAFCCWVLDLNDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMD
DSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILATCDWTFAGIVESLILLAE
LFGVFWTPPDVSAMIAPLLGDYELQGPEDLVVELVPIVMGGIGLVLGFTKEKIGKMLS
SAASTLRACKALGAYGLEILKLVMKRLFPKKEEANELAMVRSIEDAVLDLEAIENNHM
TTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINSLLARIAAARSLVHRAK
EELSSCWRAVVVMISGRPGIGKTHLARHLAKKIAASLTGDQRVGLIPRNGVDHWDAYK
GERVVLWDDYGMRHPIQGALRLQELAYTSPFTLNCDRIENKGKVFDSDAIIITTNLAN
PAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNAFSPDFSHIKLSLAP
QGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDVDTMKGPALTTFNLENSPIL
AFRQLAAENKYGLMDTMKVGKQLKDVKTMSDLKQALKNIAIKKCQIVYNGSTYTLEAD
GRGSVKVDKVQSATVHFVNHLAGALHHLRCARIRYYVKCVQEALYSMIQIAGAAFVTT
RIAMRVNIQNLWSKPQVEDTEEMTSKDGCLKPKDDEEFVVSSDDIKTEGKKGKNKSDR
TPHHRAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEEVVAIARATEEDF
CEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPEDFKPKGKPWADDDRRVD
YNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLNTKLTHIIPHGAKEFFGVPIKQIQIH
KSGELCRLRFPNPIGTDVAGMILEEGALGGTVGALPICPPTGAPLNLSVRMGTHATMK
IQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNT
VICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPLPPGTYVP
AYLGGKDPRVKGGPSLQHVMRDQLKPFTEPRGKPPRPTVLGDARKTIISVRGQTIVAP
RKWSVAQACASLDKTSSCGQPQHMRKNDCWNGGSVTGKLADQASKANLMFEEGKNMTP
VYTGALKDELVKTDKVYAKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPVRV
GMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLGQVV
ADDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSDVRDRSRDFIQ
ANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFL
RRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHADPFETMIPHSPRPIQLMSLLGEAAL
HGPAFYSQLCKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSGVNED
GVE"
mat_peptide <1..905
/gene="ORF1"
/product="p48"
mat_peptide 906..2003
/gene="ORF1"
/product="NTPase"
mat_peptide 2004..2540
/gene="ORF1"
/product="p22"
mat_peptide 2541..2942
/gene="ORF1"
/product="VPg"
mat_peptide 2943..3485
/gene="ORF1"
/product="Pro"
mat_peptide 3486..5015
/gene="ORF1"
/product="RdRp"
gene 4999..6621
/gene="ORF2"
CDS 4999..6621
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QED42428.1"
/translation="MKMASNDAAPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSRSARKYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLLG
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPSEEMSTGHSSGFVVQPQNDRCTTDGVLLGTT
QLSPVSNCTLRGDVPHITSSWSYTMNLVSQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFSPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQCLLPSYSGRNTHNVHPAPAVAPTLPGEQLLFFRTTTPGCIGYPNMDLD
CLLPQEWMQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6621..7427
/gene="ORF3"
CDS 6621..7427
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QED42429.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVELKNNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETCAARGAIN
APMTKALDWSGIRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
TSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEAQSRNLSPFMRGPHNI
WFVTPPDSRSPSHGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 tttctaacat ggctgtcact tttaagcggc ccctcggggc gcggcctaaa cagccgcccc
61 cgaaggagat accacccaga cccccgcgac cacccacacc agaattgggc aaaaagatcc
121 ctcctccccc acccaacggg gaggatgaac tagtggtctc ttacagcgcc aaagatggcg
181 tttccggact gcctgagctc accactgtca gacaaccgga agaaaccaac acggcgttca
241 gtgtcccccc actcaaccaa agggagagca gggacgccaa ggagccacta actggaacaa
301 ttattgaaat gtgggatgga gaaatctacc attacggcct gtacgtggaa cgaggtctta
361 tacttggtgt gcacaagcca ccggcagcca tcagccttgc caaggtcgag ctaacaccgc
421 tctctttgtt ctggagacct gtatatactc cccagtatct catctctcca tacactctta
481 ggagtttaca ttgtgactca ttcccctaca ctgcatttta caacagttgc tacgcctttt
541 gttgttgggt attagaccta aacgactcat ggctgagcag gagaatgatt cagagaacaa
601 caggtttctt caggccgtac caggattgga acaggaaacc cctccccact atggatgatt
661 ccaaattaaa gaaggtagcc aacatattct tgtgcactct gtcttcacta ttcaccagac
721 ccattaagga cataataggg aagttgaaac ctcttaacat ccttaacatt ctggctacat
781 gtgattggac cttcgcaggc atagtggaat ctttaatact cttagcagaa ctctttggag
841 ttttctggac acccccagat gtgtctgcga tgatcgcccc attgctaggt gattatgaac
901 tgcaaggacc tgaggacctt gtagtggagc tggtcccaat agtgatgggg gggataggtt
961 tggtgctagg atttaccaaa gagaaaattg gaaagatgct atcatccgct gcatccactt
1021 taagagcttg taaagctctt ggtgcatacg gattggaaat cttaaaattg gtcatgaagc
1081 ggctcttccc aaagaaagag gaggcaaatg aactggctat ggtgagatcc atcgaggacg
1141 cagtgctaga tctcgaggca attgaaaaca accacatgac caccctactc aaagacaaag
1201 acagcttggc aacctacatg agaacccttg accttgagga ggagaaagct agaaaactct
1261 caaccaaatc cgcttcaccc gatattgtgg gcacaatcaa ctctcttttg gcaagaatcg
1321 ctgctgcgcg ctccctagtg catcgggcga aagaagagct ctccagctgc tggagagctg
1381 tcgttgtgat gatatcggga agaccaggga tagggaaaac tcatcttgcc aggcacctgg
1441 ccaagaagat cgcggcctcc ctcacagggg accagcgtgt gggtcttatc ccacgcaatg
1501 gtgtcgacca ctgggacgca tacaagggcg aaagagttgt cctatgggac gactatggaa
1561 tgcgccaccc catccagggt gcccttaggt tgcaggagct tgcttacaca tcccccttca
1621 cgctaaattg tgacagaatt gagaacaaag ggaaagtctt tgacagtgat gccataatta
1681 tcaccaccaa tctggccaac ccagcaccac tggattatgt caactttgaa gcgtgctcga
1741 gacgtattga cttcctcgtg tacgcagagg cccctgaggt ggagaaggcg aagcgcgatt
1801 tcccaggtca acctgacatg tggaagaacg ctttcagtcc tgacttctca cacataaaac
1861 tgtcattggc tccacagggt ggttttgaca agaacggcaa caccccgcat ggaaaagggg
1921 tcatgaagac cctcaccact ggctccctca tcgcccgagc atccgggtta ctccatgaga
1981 ggctagatgt ggacacaatg aaaggcccgg ccctcaccac tttcaacttg gaaaacagcc
2041 cgatacttgc ttttagacag cttgctgctg aaaacaagta tgggctgatg gacacaatga
2101 aagttggaaa acagctcaag gatgtcaaga ccatgtcaga cctcaaacaa gcactcaaga
2161 acatcgcgat caagaagtgc cagatagtgt acaatggtag cacctacaca cttgaggccg
2221 atggcagggg tagtgtgaaa gttgacaaag tgcaaagtgc cactgtgcac tttgtgaatc
2281 atctagccgg tgccctacac cacctaaggt gcgctagaat cagatactat gttaagtgcg
2341 tccaggaggc actgtattcc atgatccaaa tcgctggggc tgcattcgtc accacgcgca
2401 tagcgatgcg cgtgaatata cagaatctct ggtccaagcc acaggtggaa gacacagaag
2461 agatgaccag caaagatggt tgcctaaaac ccaaagatga tgaagaattt gtcgtctcat
2521 ccgacgacat caaaactgag ggcaagaaag ggaagaacaa gtccgatcgt actcctcatc
2581 acagagcctt ttcaagcaaa gggctcagtg atgaggagta cgatgagtac aagagaatca
2641 gagaagaaag gaatggtaag tactccatag aagagtacct ccaggacaga gacaggtact
2701 acgaggaggt ggtggccatt gccagggcaa ccgaagagga cttctgtgaa gaagaagagg
2761 ccaaaatccg gcagagaatt tttagaccaa caaggaaaca acgcaaagaa gagagggcct
2821 ctctcggctt ggtcacaggc tctgaaatca ggaagagaaa tccagaagac ttcaaaccca
2881 agggaaagcc gtgggctgat gatgacagaa gagttgacta caatgagaaa ctcaactttg
2941 aggccccacc aagcatctgg tcgcggatag ttaactttgg ttcaggctgg ggcttctggg
3001 tctcccccag tctgaataca aaattaaccc atatcatacc ccacggtgca aaagagttct
3061 tcggagtccc tatcaagcaa atccagatac acaagtcagg tgaattgtgc cgcttgagat
3121 tcccgaaccc aatcggaacg gacgtggcgg gcatgattct agaagaaggt gcgctcgggg
3181 gaaccgtagg agcactgccc atttgccctc caactggtgc gcccctgaat ctttcagtta
3241 gaatgggaac ccatgcaacc atgaaaattc aggggcgcac agttggaggg caaatgggca
3301 tgctcctgac aggatccaac gccaagagta tggacctagg cacaacacca ggcgactgcg
3361 gctgccccta catctacaag agggggaatg actacgtggt cataggagtc catacggccg
3421 ctgcccgtgg aggaaacact gtcatatgtg ccactcaggg gagtgaggga gaagccacac
3481 ttgaaggagg tgacagtaaa gggacatact gtggcgcacc gatcttgggc ccagggagcg
3541 ctccgaagct cagtaccaag actaagtttt ggagatcatc cacaacacca ctcccacctg
3601 gcacctacgt accagcctac ctcggtggca aagaccccag agtcaaaggt ggcccttcac
3661 tgcaacacgt tatgagggac cagctgaagc cattcacaga acccagaggc aaaccaccaa
3721 ggccaactgt gttgggagat gcaaggaaaa ccatcatcag tgtccgtggg caaacaattg
3781 ttgcaccccg aaaatggtca gttgcgcaag cttgcgcatc ccttgacaaa acctcctcct
3841 gcggacaacc acaacacatg cggaaaaacg actgttggaa tggggggtcc gtcacgggaa
3901 aattggctga tcaagcctcc aaggccaacc taatgtttga agagggaaag aacatgactc
3961 cagtctacac aggtgcactt aaagatgagt tggtaaagac cgataaagtt tatgctaaga
4021 tcaagaagag gctcctgtgg ggttcagatc tggcgaccat gatacggtgc gcccgagctt
4081 ttggaggcct tatggatgaa ctcaaggcgc actgtgtcac acttcctgtc agagttggca
4141 tgaacatgaa tgaggatggc cccatcatct ttgagaagca ctccagatat agataccact
4201 atgatgctga ctattcccgg tgggactcaa cacaacaaag ggatgtgcta gcagcagccc
4261 tagaaatcat ggttaagttc tctcctgaac cacacctggg ccaggtagta gcagacgacc
4321 tcctttcccc tagcgtaatg gatgtaggtg actttcaaat atcaataagt gagggtcttc
4381 cctctggggt accttgtacc tcccagtgga attccatcgc ccactggctc ctcactcttt
4441 gtgcactttc tgatgtcagg gacaggtccc gtgacttcat tcaggccaac tcccttttct
4501 ccttctatgg tgatgatgag attgtaagca cagacataaa gttggaccca gagaagctga
4561 cagcaaaact caaggagtac gggctgaaac caacccgccc cgacaaaact gaaggacccc
4621 ttgttatctc tgaagacctg gatggcctga cattcctccg gaggactgtg acacgtgatc
4681 cagctggctg gtttggaaaa ttggaacaga gttcaattct caggcaaatg tactggacca
4741 ggggtcccaa ccatgcagat ccatttgaaa caatgatacc acactcccca agacccatac
4801 aattgatgtc cttgctgggc gaggctgcac tccacggccc ggcattctac agccaactct
4861 gcaaattagt cattgcagag ttgaaggaag gtggcatgga tttttacgtg cccagacaag
4921 agccaatgtt cagatggatg agattctcag atctcagcac atgggagggc gatcgcaatc
4981 ttgctcccag tggtgtgaat gaagatggcg tcgaatgacg ccgctccatc tgatgggtcc
5041 gctgccaacc tcgtcccaga ggtcaacaat gaggttatgg ctctggagcc cgttgttggt
5101 gccgccattg cggcacctgt agcgggccaa caaaatgtaa ttgacccctg gattagaaac
5161 aattttgtac aagcccctgg tggagagttc acagtatccc ctagaaacgc tccaggtgaa
5221 atactatgga gcgcgccctt gggccctgac ctaaatccct acctatcgcg ttcggccaga
5281 aagtacaatg gttatgcagg tggttttgaa gtgcaggtaa ttctcgcggg gaacgcgttc
5341 accgccggga aggtcatatt tgcagcagtc ccaccaaatt ttccaactga aggcttgagc
5401 cccagccagg tcactatgtt cccccatata gtagtagatg ttaggcaact agaacctgtg
5461 ttgattccct tactcggtgt taggaataat ttctatcatt ataatcaatc aaatgatccc
5521 actattaagt tgatagcaat gttgtataca ccacttaggg ctaataacgc tggggatgat
5581 gtcttcacag tttcttgccg agttctcacg agaccatccc ccgattttga tttcatattt
5641 ctagtgccac ccacagttga gtcaagaact aaaccattct ctgtcccagt tttaactgtt
5701 gaggagatga ccaattcaag attccccatt ccttcagagg agatgtcaac gggtcacagc
5761 agtggctttg ttgtccaacc acaaaacgat aggtgcacga ctgatggcgt gctcctaggc
5821 accacccaac tgtctcctgt cagcaactgt accttacgag gagatgttcc ccacatcaca
5881 agtagctgga gttacacgat gaatttggtt tctcaaaatt ggaacaatta tgacccaaca
5941 gaagaaatcc cagcccctct aggaactcca gactttgtgg ggaagattca aggtgtactc
6001 acccaaacca caaggacaga tggctcaacg cgcggccaca aagccacagt gtacactggg
6061 agcgccgatt tttctccaaa actgggtaga gttcaatttg aaactgacac agaccatgat
6121 tttgaagcta accaaaacac aaagttcacc ccagttggtg tcatccaaga tggtagcacc
6181 acccaccgaa atgaacccca acagtgtttg ctcccaagtt actcaggcag aaatactcat
6241 aatgtgcatc cggcccccgc tgtagccccg actttgccgg gtgagcaact tctcttcttc
6301 agaaccacca cgcccggatg catcgggtac cccaacatgg atttggactg tctgctcccc
6361 caggaatgga tgcagtactt ctaccaagag gcagccccag cacaatctga tgtggctctg
6421 ctaagatttg tgaatccaga cacaggtagg gttttgtttg agtgtaagct tcataaatca
6481 ggctatgtta cagtggctca cactggccaa catgatttgg ttattccccc caatggttat
6541 tttagatttg attcctgggt taaccagttc tacacgcttg cccccatggg aaatggaacg
6601 gggcgtagac gtgcagtata atggctggag ctttctttgc tggattggca tctgatgtcc
6661 ttggctctgg acttggttcc cttatcaatg ctggggctgg ggccatcaac caaaaagttg
6721 agcttaaaaa taacagaaaa ttgcaacaag catccttcca atttagcagc aatctacaac
6781 aggcttcctt tcagcatgac aaagagatgc tccaagcaca aattgaggcc accaaaaagc
6841 tacaacagga aatgatgaaa gttaagcagg caatgctcct agagggtggg ttctctgaga
6901 cgtgtgcagc ccgcggggca atcaacgccc ccatgacaaa agctttggac tggagcggga
6961 taaggtactg ggctcccgat gctaggacta caacatacaa tgcaggccgc ttctccaccc
7021 ctcaaccatc gggggcactg ccaggaagag ctaatcttag ggatgctgtc cctgctcggg
7081 gttcctctag taaatcttct acctcttcta ttgctacttc tgtgtactca aatcaaacta
7141 cttcaacgag acttggttct acagctggtt ctggtaccag tgtctcgagc ctcccgtcaa
7201 ctgcaaggac taggagctgg gtggaggctc agagtaggaa tttgtcacct ttcatgaggg
7261 ggccccacaa catatggttt gtcaccccac cagatagcag atcccctagc cacggcacag
7321 tctcaaccgt gcctaaagag attttggact cctggactgg cgctttcaac acgcgcaggc
7381 agccactctt cgctcacatt cgtaagcgag gggagtcacg ggcgtaa
//