Typing tool
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Typing tool
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Complete norovirus genomes
| MN308007 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5096
ORF2: 5077..6699
ORF3: 6699..7505
LOCUS MN308007 7505 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 079_GII.Pe_GII.4_Araguaina nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION MN308007
VERSION MN308007.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7505)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7505)
AUTHORS Tinker,R.J., da-Costa,A.C., Leal,E.S., Tahmasebi,R.,
Milagres,F.A.P., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Teles,Md.A.R., Sayao-Lobato,M.C.A.B., Chagas,R.T.,
Santos-Abrao,Md.F.N., Alves-Soares,C.V.D., Cunha,M.S., Deng,X.,
Delwart,E., Sabino,E.C. and Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (13-AUG-2019) Institute of Tropical Medicine, University
of Sao Paulo, Av Dr Eneas de Carvalho Aguiar 470, Sao Paulo, Sao
Paulo 05403000, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7505
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="079_GII.Pe_GII.4_Araguaina"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="09-Jan-2013"
/note="genotype: GII.Pe_GII.4"
gene <1..5096
/gene="ORF1"
CDS <1..5096
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="QED42409.1"
/translation="ASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQP
PPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETN
TAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAK
VELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAV
ELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKE
EANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSA
SPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKK
IAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKNAFSSDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASEL
LHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDL
KQALKNIAIKKCQIVYDGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCAR
IRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMTSKDGCLKP
KDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
ATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPG
SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
ESFTGKLADQASKANLMFGEGKNMTPVYTGALKDELVKTDKVYAKIKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
QQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEY
GLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH
EDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..983
/gene="ORF1"
/product="p48"
mat_peptide 984..2081
/gene="ORF1"
/product="NTPase"
mat_peptide 2082..2618
/gene="ORF1"
/product="p22"
mat_peptide 2619..3020
/gene="ORF1"
/product="VPg"
mat_peptide 3021..3563
/gene="ORF1"
/product="Pro"
mat_peptide 3564..5093
/gene="ORF1"
/product="RdRp"
gene 5077..6699
/gene="ORF2"
CDS 5077..6699
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QED42410.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLGSSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6699..7505
/gene="ORF3"
CDS 6699..7505
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QED42411.1"
/translation="MAGAFFAGLASDVLGSWLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 tggcgtctaa cgacgcttcc gctgccgctg ttgccaacag caacaacgac atcgcaaaat
61 cttcaagtga cggtgtgttt tctaacatgg ctgtcacttt taagcgggcc ctcggggcgc
121 ggcctaaaca gccgcccccg aaggagatac cacccagacc cccgcgacca cccacaccag
181 aattggtcaa aaagatccct cctcccccac ccaacgggga ggatgaacta gtggtctctt
241 acagcgccaa agatggcgtt tccggactgc ctgagctcac cactgtcaga caaccggaag
301 aaaccaacac ggcgttcagt gtccccccac tcaaccaaag ggagagcagg gacgccaagg
361 agccactaac tggaacaatt attgaaatgt gggatggaga aatctaccat tacggcctgt
421 acgtggaacg aggtcttata cttggtgtgc acaagccacc ggcagccatc agccttgcca
481 aggtcgagct aacaccgctc tctttgttct ggagacctgt atacactccc cagtatctca
541 tctctccaga cactcttagg agattacatg gagagtcatt cccctacact gcatttgaca
601 acaattgcta cgccttttgt tgttgggtat tagacctaaa cgactcatgg ctgagcagga
661 gaatgattca gagaacaaca ggtttcttca ggccgtacca ggattggaac aggaaacccc
721 tccccactat ggatgattcc aaattaaaga aggtagccaa catattcttg tgcactttgt
781 cttcactatt caccagacct attaaggaca taatagggaa gttgaaacct cttaacatcc
841 ttaacattct ggctacatgt gattggacct tcgcaggcat agtggaatct ttaatactct
901 tagcagaact ctttggagtt ttctggacac ccccagatgt gtctgcgatg atcgccccct
961 tgctaggtga ttatgaactg caaggacctg aggaccttgc agtggaactg gtcccaatag
1021 tgatgggggg gataggtttg gtgctaggat ttaccaaaga gaaaattgga aagatgctat
1081 catccgctgc atccacttta agagcttgta aagaccttgg tgcatacgga ctggaaatct
1141 taaaattggt catgaagtgg ttcttcccaa agaaagagga ggcaaatgaa ctggctatgg
1201 tgagatccat cgaggacgca gtgctagatc tcgaggcaat tgaaaacaac cacatgacca
1261 ccctactcaa agacaaagac agcttggcaa cctacatgag aacccttgac cttgaggagg
1321 agaaagccag aaaactctca accaaatctg cttcacccga tattgtgggc acaatcaact
1381 ctcttttggc aagaatcgct gctgcacgct ccctagtgca tcgggcgaaa gaagagctct
1441 ccagcaggcc gagacctgtc gttgtgatga tatcgggaag accagggata gggaaaactc
1501 atcttgccag ggagctggcc aagaagatcg cggcctccct cacaggggac cagcgtgtgg
1561 gtcttatccc acgcaatggt gtcgaccact gggacgcata caagggcgaa agagttgtcc
1621 tatgggacga ctatggaatg agcaacccca tccatgatgc cctcaggttg caggagcttg
1681 ctgacacttg ccccctcacg ctaaattgtg acagaattga gaacaaaggg aaagtctttg
1741 acagtgatgc cataattatc accaccaatc tggccaaccc agcaccactg gattatgtca
1801 actttgaagc gtgctcgaga cgtattgact tcctcgtgta cgcagaagcc cctgaggtgg
1861 agaaggcaaa gcgcgacttc ccaggtcaac ctgatatgtg gaagaacgct ttcagttctg
1921 acttctcaca cataaaactg tcattggctc cccagggtgg ttttgacaag aacggcaaca
1981 ccccgcatgg aaaaggggtc atgaagaccc tcaccactgg ctccctcatc gcccgagcat
2041 cagagttact ccatgagagg ctagatgaat atgaactgca aggcccagcc ctcaccactt
2101 tcaactttga ccgcaacaag atacttgctt ttagacagct tgctgctgaa aacaagtatg
2161 ggctgatgga cacaatgaga gttggaaaac aactcaagga tgtcaagacc atgtcagacc
2221 tcaaacaagc actcaagaac atcgcgatca aaaagtgcca gatagtgtac gatggtggca
2281 cctacacact tgaggctgat ggcaagggta gtgtgaaagt tgacaaagtg cagagtgcca
2341 ctgtgcagac caacaatgaa ctagccggtg ccctacacca cctaaggtgc gctagaatca
2401 gatactatgt taagtgcgtc caggaggcac tgtattccat catccaaatc gctggggctg
2461 cattcgtcac cacgcgcatc gctaagcgca tgaatataca gaacctctgg tccaagccac
2521 aggtggaaga cacagaagag atgaccagca aagatggttg cctaaaaccc aaagatgatg
2581 aagagtttgt cgtctcatcc gacgacatca aaactgaggg caagaaaggg aagaacaagt
2641 ccggccgtgg caagaagcac acagcctttt caagcaaagg gctcagtgat gaggagtacg
2701 atgagtacaa gagaatcaga gaagaaagga atggtaagta ctccatagaa gagtaccttc
2761 aggacagaga caggtactac gaggaggagg tggccatcgc cagggcaacc gaagaggact
2821 tctgtgaaga agaagaggcc aaaatccggc agagaatttt tagaccaaca aggaaacaac
2881 gcaaagaaga gagggcctct ctcggcttgg tcacaggctc tgaaatcagg aagagaaacc
2941 cagaagactt caaacccaag ggaaagctgt gggctgatga tgacagaagt gttgactaca
3001 atgagaaact caactttgag gccccaccaa gcatctggtc gcggatagtc aactttggtt
3061 caggctgggg cttctgggtc tcccccagtc tgtttataac atcaacccat gtcatacccc
3121 aaggtgcaaa agagttcttc ggagtcccta tcaagcaaat ccagatacac aaatcaggtg
3181 aattctgccg gttgagattc ccaaagccaa tcagaactga tgtgacgggc atgattctag
3241 aagaaggtgc gcccgaggga accgtggcca cactgctcat caagagacca actggagagc
3301 tcatgcctct ggcagccaga atgggaaccc atgcaaccat gaaaattcag gggcgcacag
3361 ttggagggca aatgggtatg ctcctgacag gatccaacgc caagagtatg gacctaggca
3421 caacaccagg cgactgcggc tgcccctaca tctacaagag ggggaatgac tacgtggtca
3481 taggagtcca tacggccgct gcccgtggag gaaacactgt catatgtgcc actcagggga
3541 gtgagggaga agccacactt gaaggaggtg acagtaaagg gacatactgt ggcgcaccaa
3601 tcttgggccc agggagcgct ccgaagctca gtaccaagac taagttttgg agatcatcca
3661 caacaccact cccacctggc acctacgaac cagcctacct cggtggcaaa gaccccagag
3721 tcaaaggtgg cccttcattg caacaagtta tgagggacca gctaaagcca ttcacagaac
3781 ccagaggcaa accaccaagg ccaaatgtgt tggaagctgc caagaaaacc atcatcaatg
3841 tccttgagca aacaattgat ccaccccaaa aatggtcatt tgcgcaagct tgcgcatccc
3901 ttgacaaaac cacctccagc ggccacccac accacatgcg gaaaaacgac tgttggaatg
3961 gggagtcctt cacaggaaaa ttggctgatc aagcctccaa ggccaaccta atgtttggag
4021 agggaaagaa catgactcca gtctacacag gtgcacttaa agatgagttg gtaaagaccg
4081 ataaagttta tgctaagatc aagaagaggc tcctgtgggg ttcagatctg gcgaccatga
4141 tacggtgcgc ccgagctttt ggaggcctta tggatgaact caaggcacac tgtgtcacac
4201 ttcctgtcag agttggtatg aacatgaatg aggatggccc catcatcttt gagaagcact
4261 ccagatatag ataccactat gatgctgatt attcccggtg ggactcaaca caacaaaggg
4321 atgtgctagc agcagcacta gaaatcatgg ttaagttctc tccagaacca cacctggccc
4381 agatagttgc agaagacctc ctttccccta gcgtgatgga tgtaggtgac tttcaaatat
4441 caataagtga gggtctcccc tctggggtac cttgtacctc ccagtggaat tccatcgccc
4501 actggctcct cactctgtgt gcactctctg aagtcacgga cctgtcccct gacatcattc
4561 aggccaactc ccttttctcc ttctatggtg atgatgagat tgtaagcaca gacataaagt
4621 tggacccaga gaagctgaca gcaaaactca aggagtacgg gctgaaacca acccgccccg
4681 acaaaactga aggacccctt gttatctctg aagacctgga tggcctgaca ttcctccgga
4741 gaactgtgac ccgtgatcca gctggctggt ttggaaaatt ggaacaaagt tcaattctca
4801 ggcaaatgta ctggactagg ggtcccaacc atgaagatcc atttgaaaca atgataccac
4861 actcccaaag acccatacaa ttgatgtcct tgctgggcga ggctgcactc cacggcccgg
4921 cattttacag caaaattagc aaattagtca ttgcagagtt gaaggaaggt ggcatggatt
4981 tttacgtgcc cagacaagag ccaatgttca gatggatgag attctcagat ctgagcacgt
5041 gggagggcga tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc gagtgacgcc
5101 aacccatctg atgggtccgc agccaacctc gtcccagagg tcaacaatga ggttatggct
5161 ctggagcccg ttgttggtgc cgccattgcg gcacctgtag cgggccaaca aaatgtaatt
5221 gacccctgga ttagaaacaa ttttgtacaa gcccctggtg gagagtttac agtatcccct
5281 agaaacgctc caggtgaaat actatggagc gcgcccctgg gccccgatct aaatccctac
5341 ctatcccatt tggccagaat gtacaatggt tatgcaggtg gttttgaagt gcaggtaatt
5401 ctcgcgggga acgcgttcac cgccgggaag gtcatatttg cagcagtccc accaaatttt
5461 ccaactgaag gcttgggctc aagccaggtc actatgttcc cccatatagt agtagatgtt
5521 aggcaactag aacctgtgtt gattccctta cccgatgtta ggaataattt ctatcattat
5581 aatcaatcaa atgaccccac cattaagttg atagcaatgt tgtatacacc acttagggct
5641 aataatgctg gggatgatgt cttcacagtt tcttgccgag ttctcacgag accatccccc
5701 gattttgatt tcatatttct agtgccaccc acagttgagt caagaactaa accattctct
5761 gtcccagttt taactgttga ggagatgacc aattcaagat tccccattcc tttggaaaag
5821 ttgttcacgg gtcccagcag tgcctttgtt gtccaaccac aaaacggcag gtgcacgact
5881 gatggcgtgc tcctaggcac cacccaactg tctcctgtca acatctgcac cttcagagga
5941 gatgtcaccc atatcacagg tagtcgtaac tacacaatga atttggcttc tcaaaattgg
6001 agcaattatg acccaacaga agaaatccca gcccctctag gaactccaga ttttgtgggg
6061 aagattcaag gcatgctcac ccaaaccaca aggacagatg gctcaacacg cggtcacaaa
6121 gccacagtgt acactgggag cgccgacttt gctccaaaac tgggtagagt acaatttgaa
6181 actgacacag accatgattt tgaagctaac caaaacacaa agttcacccc agtcggtgtc
6241 atccaagatg gtggcaccac ccaccgaaat gaaccccaac agtgggtgct cccaagttac
6301 tcaggcagaa atactcataa tgtgcatctg gcccccgctg tagcccccac ttttccgggt
6361 gagcaacttc tcttctttag atccaccatg cccggatgca gcgggtaccc caacatggat
6421 ttggactgtc tgctccccca ggaatgggtg cagtacttct accaagaggc agccccagca
6481 caatctgatg tggctctgct aagatttgtg aatccagaca caggtagggt tttgtttgag
6541 tgtaagcttc ataaatcagg ctatgttaca gtggctcaca ctggccaaca tgatttggtt
6601 attcccccca atggttattt tagatttgat tcctgggtca accagtttta cacgcttgcc
6661 cccatgggaa atggaacggg gcgtagacgt gcagtataat ggctggagct ttctttgctg
6721 gattggcatc tgatgtcctt ggctcttggc ttggttccct tatcaatgct ggggctgggg
6781 ccatcaacca aaaagttgag tttgaaaata acagaaaatt gcaacaagca tccttccaat
6841 ttagcagcaa tctacaacag gcttcctttc aacatgacaa agagatgctt caagcacaaa
6901 ttgaggccac caaaaggcta caacaggaaa tgatgaaagt taagcaggca atgctcctag
6961 agggtgggtt ctctgagaca gatgcagccc gcggggcaat caacgccccc atgacaaaag
7021 ctttggactg gagtgggaca aggtactggg ctcccgatgc taggactaca acatacaatg
7081 caggccgctt ttccacccct caaccatcgg gggcactgcc aggaagagct aatcttaggg
7141 atgctgtccc tgctcggggt tcctctagta aatcttctaa ctcttctatt gctacttctg
7201 tgtactcaaa tcaaactact tcaacgagac ttggttctac agctggttct ggtaccagtg
7261 tctcgagcct cccgtcaact gcaaggacta ggagctgggt tgaggatcaa agtaggaatt
7321 tgtcaccttt catgaggggg gcccacaaca tatcgtttgt caccccacca tctagcagat
7381 cctctagcca aggcacagtc tcaaccgtgc ctaaagaggt tttggactcc tggactggcg
7441 ctttcaacac gcgcaggcag ccactcttcg ctcacattcg taagcgaggg gagtcacggg
7501 cgtaa
//