Typing tool
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Typing tool
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Complete norovirus genomes
| MN308004 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5097
ORF2: 5078..6700
ORF3: 6700..7506
LOCUS MN308004 7506 bp RNA linear VRL 29-JUN-2021
DEFINITION Norovirus GII isolate 068_GII.Pe_GII.4_Araguaina nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION MN308004
VERSION MN308004.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7506)
AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos
Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M.,
Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A.
TITLE Norovirus strains in patients with acute gastroenteritis in rural
and low-income urban areas in northern Brazil
JOURNAL Arch Virol 166 (3), 905-913 (2021)
PUBMED 33462673
REFERENCE 2 (bases 1 to 7506)
AUTHORS Tinker,R.J., da-Costa,A.C., Leal,E.S., Tahmasebi,R.,
Milagres,F.A.P., Pandey,R.P., Jose-Abrego,A., Brustulin,R.,
Teles,Md.A.R., Sayao-Lobato,M.C.A.B., Chagas,R.T.,
Santos-Abrao,Md.F.N., Alves-Soares,C.V.D., Cunha,M.S., Deng,X.,
Delwart,E., Sabino,E.C. and Luchs,A.
TITLE Direct Submission
JOURNAL Submitted (13-AUG-2019) Institute of Tropical Medicine, University
of Sao Paulo, Av Dr Eneas de Carvalho Aguiar 470, Sao Paulo, Sao
Paulo 05403000, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7506
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="068_GII.Pe_GII.4_Araguaina"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="10-Dec-2014"
/note="genotype: GII.Pe_GII.4"
gene <1..5097
/gene="ORF1"
CDS <1..5097
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QED42400.1"
/translation="MASNDASAAAVANSNNDIAKSSSDGMFSNMAVTFKRALGARPKQ
PPPKEVPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEET
NTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLA
KVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLK
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAK
KIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERLDEYELQGPALTTLNCVHQPILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSD
LKQALKNIAIKKCQIVYDGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCA
RIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQMEDTEEMANKDGCLK
PRDKEEFVLSSNNIKTEGKKGKNKSHRTPHHWAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYSSEEVAIARATEEDFCEEEEAKIRQRIFKPTRKQRKEERASLGLVT
GSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPS
LFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGT
VATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGNEGEATLEGGDSKGTYCGAPILGP
GSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWN
GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKVKKRLLWGSDLA
TMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN
HADPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..984
/gene="ORF1"
/product="p48"
mat_peptide 985..2082
/gene="ORF1"
/product="NTPase"
mat_peptide 2083..2619
/gene="ORF1"
/product="p22"
mat_peptide 2620..3021
/gene="ORF1"
/product="VPg"
mat_peptide 3022..3564
/gene="ORF1"
/product="Pro"
mat_peptide 3565..5094
/gene="ORF1"
/product="RdRp"
gene 5078..6700
/gene="ORF2"
CDS 5078..6700
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QED42401.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFSPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6700..7506
/gene="ORF3"
CDS 6700..7506
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QED42402.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALLGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSIARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 atggcgtcta acgacgcttc cgctgccgct gttgccaaca gcaacaacga catcgcaaaa
61 tcttcaagtg acggtatgtt ttctaacatg gctgtcactt ttaagcgggc cctcggggcg
121 cggcctaaac agccgccccc gaaggaagta ccacccagac ccccgcgacc acccacacca
181 gaattggtca aaaagatccc tcctccccca cccaacgggg aggatgaact agtggtctct
241 tacagcgcca aagatggcgt ttccggactg cctgagctca ccactgtcag acaaccggaa
301 gaaaccaaca cggcgttcag tgtcccccca ctcaaccaaa gggagagcag ggacgccaag
361 gagccattaa ctggaacaat cattgaaatg tgggatggag aaatctacca ttacggcctg
421 tacgtggaac gaggtcttat acttggtgtg cacaagccac cggcagccat tagccttgcc
481 aaggtcgagc tagcaccgct ctctttgttc tggagacctg tatacacccc ccagtatctc
541 atctctccgg acactcttag gagattgcat ggagagtcat tcccttacac tgcatttgac
601 aacaattgct acgccttttg ttgttgggta ttagacctaa acgactcatg gctaagcagg
661 agaatgattc agagaacaac aggcttcttt aggccgtacc aggattggaa caggaaaccc
721 ctccccacta tggatgattc caagttaaag aaggtagcca acatattctt gtgcactttg
781 tcttcactat tcaccagacc cattaaggac ataataggga agttgaaacc tcttaacatc
841 cttaacattc tcgctacatg tgattggacc ttcgcaggca tagtggaatc cttaatactc
901 ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat gatcgccccc
961 ttgctaggtg attatgaact gcaaggacct gaggaccttg cagtggaact ggtcccaata
1021 gtgatggggg ggataggttt ggtgctagga tttaccaaag agaaaatcgg aaagatgcta
1081 tcatccgctg catccacttt aagagcttgt aaagaccttg gtgcatacgg actggaaatc
1141 ttaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga actggctatg
1201 gtgagatcca tcgaggatgc agtactagac cttgaggcaa ttgaaaacaa ccacatgacc
1261 accctactca aagacaaaga cagcttggca acctacatga gaacccttga ccttgaggag
1321 gagaaagcca gaaaactctc aaccaaatct gcttcacccg atattgtggg cacaatcaac
1381 tctcttctgg caagaatcgc tgctgcacgc tccctagtgc atcgggcgaa agaagagctc
1441 tccagcaggc cgagacctgt cgttgtgatg atatcgggaa gaccagggat agggaaaact
1501 caccttgcca gggagctggc caagaagatc gcggcctccc tcacagggga ccagcgtgtg
1561 ggtcttatcc cacgcaatgg tgtcgaccac tgggacgcat acaagggcga aagagttgtc
1621 ctatgggacg actatggaat gagcaacccc atccatgatg ccctcaggtt acaggagctt
1681 gctgacactt gccccctcac gctaaattgt gacagaattg agaacaaagg gaaagtcttt
1741 gacagtgatg ccataattat caccaccaat ctggccaacc cagcaccact ggattatgtc
1801 aactttgaag cgtgctcgag acgcattgat ttcctcgtgt acgctgaagc ccctgaggtg
1861 gagaaggcaa agcgcgactt cccaggtcaa cctgacatgt ggaagaacgc tttcagtcct
1921 gacttctcac acataaaact gtcattggct ccacagggtg gttttgacaa gaatggcaac
1981 accccgcatg gaaaaggggt catgaagacc ctcaccactg gctccctcat cgcccgagca
2041 tcagggttac tccatgagag gctagatgaa tatgaactgc aaggcccggc cctcacaact
2101 ctcaactgtg tccatcagcc catacttgct tttagacagc ttgctgctga aaacaagtat
2161 gggctgatgg acacaatgag agttggaaaa caactcaagg atgtcaagac catgtcagac
2221 ctcaaacaag cactcaagaa catcgcgatc aaaaagtgcc agatagtgta cgatggtggc
2281 acctacacac ttgaggctga tggcaagggt agtgtgaaag ttgacaaagt gcaaagtgcc
2341 actgtgcaga ccaacaatga acttgccggt gccctacacc acctaaggtg cgctagaatc
2401 agatactatg ttaagtgcgt ccaggaggca ctgtattcca tcatccaaat tgctggggct
2461 gcattcgtca ccacgcgcat cgctaagcgc atgaatatac agaatctctg gtccaagcca
2521 cagatggaag acacagaaga gatggccaac aaagatggtt gcctaaaacc cagagataag
2581 gaagagtttg tcctctcatc caacaacatc aaaactgagg gcaagaaagg gaagaacaag
2641 tctcatcgta ctcctcatca ctgggccttt tcaagtaaag gactcagtga tgaggagtac
2701 gatgagtaca agaggatcag agaagaaagg aatggtaagt actccataga agagtacctt
2761 caggacagag acaggtactc ttctgaggag gtggccattg ccagggcaac cgaagaggac
2821 ttctgtgaag aagaagaggc caaaatccgg cagagaattt ttaaaccaac aaggaaacaa
2881 cgcaaagaag agagggcctc tctcggcttg gtcacaggct ctgaaatcag gaagagaaac
2941 ccagaagact tcaaacccaa gggaaagctg tgggctgatg atgacagaag tgttgactac
3001 aatgagaaac tcaactttga ggccccacca agcatctggt cgcgtatagt caactttggt
3061 tcaggctggg gcttctgggt ctcccccagt ctatttataa catcaaccca tgtcataccc
3121 caaggtgcaa aagagttctt cggagtccct atcaagcaaa tccagataca caagtcaggt
3181 gaattctgcc ggttgagatt cccaaagcca atcagaactg atgtgacggg catgattcta
3241 gaagaaggtg cgcccgaggg gaccgtggcc acactgctca tcaagagacc aactggagag
3301 ctcatgcctc tggcagccag aatggggacc catgcaacca tgaaaattca ggggcgcaca
3361 gttggagggc aaatgggtat gctcctgaca ggatccaatg ccaagagtat ggacctaggc
3421 acaacaccag gcgactgcgg ctgcccctac atctacaaga gggggaatga ctacgtggtc
3481 ataggagtcc atacggccgc tgcccgtgga ggaaacactg tcatatgtgc cacccagggg
3541 aatgagggag aagccacact tgaaggaggt gacagtaaag ggacatactg tggcgcacca
3601 atcttgggcc cagggagcgc tccgaagctc agtaccaaga ctaagttttg gagatcatcc
3661 acaacaccac tcccacctgg cacctacgaa ccagcctacc tcggtggcaa agaccctaga
3721 gtcaaaggtg gcccttcact gcagcaagtt atgagggacc agctgaagcc attcacagaa
3781 cccagaggca aaccaccaag accaaatgtg ttggaagctg ccaagaaaac catcatcaat
3841 gtccttgagc aaacaattga tccacctcaa aaatggtcat ttgcgcaagc ttgcgcatcc
3901 cttgacaaaa ccacctccag cggccacccc caccacatgc ggaaaaacga ctgttggaat
3961 ggggagtcct tcacgggaaa attggctgat caagcctcca aggccaacct aatgtttgaa
4021 gagggaaaga acatgactcc agtttacaca ggtgcactta aagatgagtt ggtaaagacc
4081 gataaaattt atggtaaggt caagaagagg cttctgtggg gttcagatct ggcgaccatg
4141 atacggtgcg cccgagcttt tggaggcctt atggatgaac tcaaggcaca ctgtgtcaca
4201 cttcctgtca gagttggtat gaacatgaat gaggatggcc ccatcatctt tgagaagcac
4261 tccagatata gataccacta tgatgctgat tattcccggt gggattcaac acaacaaagg
4321 gatgtgctag cagcagcact agaaatcatg gttaagttct ctccagaacc acacctggcc
4381 cagatagttg cagaagacct cctctcccct agcgtgatgg atgtaggtga ctttcaaata
4441 tcaataagtg agggtctccc ctctggggta ccttgtacct cccagtggaa ttccatcgcc
4501 cattggctcc tcactctgtg tgcactctct gaagtcacgg acctgtcccc cgatatcatt
4561 caggccaact cccttttctc cttctatggt gatgatgaaa ttgtaagcac agatataaag
4621 ttggacccag agaagctgac agcaaaactc aaggagtacg ggctgaaacc aacccgcccc
4681 gacaaaactg aaggacccct tgttatctct gaagacctgg atggcctgac attcctccgg
4741 agaactgtga cccgtgatcc agctggctgg tttggaaaat tggaacagag ttcaattctc
4801 aggcaaatgt actggaccag gggtcccaac catgcagatc catttgaaac aatgatacca
4861 cactcccaaa gacccataca attgatgtcc ttgctgggcg aggctgcact ccacggcccg
4921 gcattctata gcaaaattag caaattagtc attgcagagt tgaaggaagg tggcatggat
4981 ttttacgtac ccagacaaga gccaatgttc agatggatga gattctcaga tctgagcacg
5041 tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgagtgacgc
5101 caacccatct gatgggtccg cagccaacct cgtcccagag gtcaacaatg aggttatggc
5161 tctggagccc gttgtaggtg ccgccattgc ggcacctgta gcgggccaac aaaatgtaat
5221 tgacccctgg attagaaata attttgtaca agcccctggt ggagagttta cagtatcccc
5281 tagaaacgct ccaggtgaaa tactatggag cgcgcccctg ggccctgatc taaatcccta
5341 cctatcccat ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat
5401 tctcgcgggg aacgcgttca ccgccgggaa ggtcatattt gcagcagtcc caccaaattt
5461 tccaactgaa ggtttgagcc ccagccaggt cactatgttc ccccatatag tagtagatgt
5521 taggcaatta gaacctgtgt tgattccctt acccgatgtt aggaataatt tctatcatta
5581 caatcaatca aatgacccca ccattaagtt gatagcaatg ttgtacacac cacttagggc
5641 caacaatgct ggggatgatg tcttcacagt ttcttgccga gttctcacga gaccatcccc
5701 cgattttgat ttcatatttc tagtgccacc cacagttgag tcaagaacta aaccattctc
5761 tgtcccagtt ttaactgttg aggagatgac caattcaaga ttccccattc ctttggaaaa
5821 gttgttcacg ggtcccagca gtgcctttgt tgtccaacca caaaacggta ggtgtacgac
5881 tgatggcgtg ctcctaggca ccacccaact gtctcctgtc aacatttgca ccttcagagg
5941 agatgtcacc catatcacag gtagtcgtaa ctacacaatg aatttggctt ctcagaattg
6001 gagcaattat gacccaacag aagaaatccc agcccctcta ggaactccag attttgtggg
6061 gaagattcaa ggcatgctca cccaaaccac aaggacagat ggctcaacgc gcggccacaa
6121 agccacagtg tacactggga gcgccgattt ttctccaaaa ctgggtagag ttcaatttga
6181 aactgacaca gaccatgatt ttgaagctaa ccaaaacaca aagttcaccc cagttggtgt
6241 catccaagat ggtagcacca cccaccgaaa tgaaccccaa cagtgggtgc tcccaagcta
6301 ctcaggcaga aatactccca atgtgcacct ggcccctgct gtagccccca cttttccggg
6361 tgagcaactt ctcttcttca ggtccaccat gcccggatgc agcgggtacc ccaacatgga
6421 tttggactgt ctactccccc aggaatgggt gcagtacttc taccaagagg cagccccagc
6481 acaatctgat gtggctctgc taagatttgt gaatccagac acaggtaggg ttttgtttga
6541 gtgtaagctt cataaatcag gctatgtaac agtggctcac actggccaac atgatttggt
6601 tatccccccc aatggttatt ttaggtttga ttcctgggtc aaccagtttt acacgcttgc
6661 ccccatggga aatggaacgg ggcgtagacg tgcactataa tggctggagc tttctttgct
6721 ggattagcat ctgatgtcct tggctctgga cttggttccc ttatcaatgc tggggctggg
6781 gccatcaacc aaaaagttga gtttgaaaat aacagaaaat tgcaacaagc atccttccaa
6841 tttagcagca atctacaaca ggcttccttt caacatgaca aagagatgct ccaagcacaa
6901 attgaggcta ccaaaaggct acaacaggaa atgatgaaag ttaagcaggc agtgctccta
6961 gagggtgggt tctctgagac agatgcagcc cgtggggcaa tcaacgcccc catgacaaaa
7021 gctttggact ggagcgggac aaggtactgg gctcccgatg ctaggactac aacatacaat
7081 gcaggccgct tttctacccc tcaaccatca ggggcactgc tgggaagagc taatcttagg
7141 gatgccgtcc ctgctcgggg ttcctccagt aagtcttcta actcttcaac tgctacttct
7201 gtgtactcaa atcaaactac ttcaacgaga cttggttcta cagctggttc tggcaccagt
7261 gtctcgagct tcccgtcaat tgcaaggact aggagctggg ttgaggatca aagtaggaat
7321 ttgtcacctt tcatgagggg ggctcacaac atatcgttcg tcaccccacc atctagcaga
7381 tcctctagcc aaggcacagt ctcaaccgtg cctaaagaga ttttggactc ctggactggc
7441 gctttcaaca cgcgcaggca gccactcttc gcccacattc gtaagcgagg ggagtcacgg
7501 gcgtaa
//