Typing tool
|
Complete norovirus genomes
MN307997 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5103 ORF2: 5084..6706 ORF3: 6706..7512LOCUS MN307997 7512 bp RNA linear VRL 29-JUN-2021 DEFINITION Norovirus GII isolate 032_GII.Pe_GII.4_Araguaina nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION MN307997 VERSION MN307997.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7512) AUTHORS Tinker,R.J., da Costa,A.C., Tahmasebi,R., Milagres,F.A.P., Dos Santos Morais,V., Pandey,R.P., Jose-Abrego,A., Brustulin,R., Rodrigues Teles,M.D.A., Cunha,M.S., Araujo,E.L.L., Gomez,M.M., Deng,X., Delwart,E., Sabino,E.C., Leal,E. and Luchs,A. TITLE Norovirus strains in patients with acute gastroenteritis in rural and low-income urban areas in northern Brazil JOURNAL Arch Virol 166 (3), 905-913 (2021) PUBMED 33462673 REFERENCE 2 (bases 1 to 7512) AUTHORS Tinker,R.J., da-Costa,A.C., Leal,E.S., Tahmasebi,R., Milagres,F.A.P., Pandey,R.P., Jose-Abrego,A., Brustulin,R., Teles,Md.A.R., Sayao-Lobato,M.C.A.B., Chagas,R.T., Santos-Abrao,Md.F.N., Alves-Soares,C.V.D., Cunha,M.S., Deng,X., Delwart,E., Sabino,E.C. and Luchs,A. TITLE Direct Submission JOURNAL Submitted (13-AUG-2019) Institute of Tropical Medicine, University of Sao Paulo, Av Dr Eneas de Carvalho Aguiar 470, Sao Paulo, Sao Paulo 05403000, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R9 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7512 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="032_GII.Pe_GII.4_Araguaina" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Brazil" /collection_date="25-Apr-2014" /note="genotype: GII.Pe_GII.4" gene 1..5103 /gene="ORF1" CDS 1..5103 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QED42379.1" /translation="MKMASNDASAAAVANSNNDIAKSSSDGVLSNMAVTFKRALGARP KQPPPREIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSTKGGVSGLPELTTVRQPE ETNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEVNELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEYELQGPALTTLNCVHQPILAFRQLAAENKYGLMDTMRVGKQLKDVKTM SDLKQALKNIAIKKCQIVYDGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMTNKDGC LKPKDDEEFVVSSDDIKTEGKKGKNKSHRIPHHWAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYSSMEVAITRATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGL VTGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVS PSLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPE GTVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG DCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPIL GPGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVEGGPSLQQVLRDQLKPFTE PRGRPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDC WNGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKIKKRLLWGSD LATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW DSTQQRDVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGVPC TSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKL KEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRG PNHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSQLSKLVIAELKEGGMDFYVPRQ EPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide 1..990 /gene="ORF1" /product="p48" mat_peptide 991..2088 /gene="ORF1" /product="NTPase" mat_peptide 2089..2625 /gene="ORF1" /product="p22" mat_peptide 2626..3027 /gene="ORF1" /product="VPg" mat_peptide 3028..3570 /gene="ORF1" /product="Pro" mat_peptide 3571..5100 /gene="ORF1" /product="RdRp" gene 5084..6706 /gene="ORF2" CDS 5084..6706 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QED42380.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTSSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNDDPTEEIPAPLGTPDFVGKIQGVL TQTTRTDGSTRGHKATVYTGSADFSPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV" gene 6706..7512 /gene="ORF3" CDS 6706..7512 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QED42381.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPEARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPPTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 ttgaagatgg cgtctaacga cgcttccgct gccgctgttg ccaacagcaa caacgacatc 61 gcaaaatctt caagtgacgg tgtgctttct aacatggctg tcacttttaa gcgggccctc 121 ggggcgcggc ctaaacagcc gcccccgagg gagataccac ccagaccccc gcgaccaccc 181 acaccagaat tggtcaaaaa gatccctcct cccccaccca acggggagga tgaactagtg 241 gtctcttaca gcaccaaagg tggcgtttcc ggattgcctg agctcaccac tgtcagacaa 301 ccggaagaaa ccaacacggc gttcagtgtc cccccactca accaaagaga gagcagggac 361 gccaaggagc cactaactgg aacaattatt gaaatgtggg atggagaaat ctaccattac 421 ggcctgtatg tggaacgggg tcttatactt ggtgtgcaca aaccaccggc agccatcagc 481 cttgccaagg tcgagctagc accgctctct ttgttttgga gacctgtata caccccccag 541 tatctcatct ctccggacac tcttaggaga ttgcatggag agtcattccc ttacactgca 601 tttgacaaca attgctacgc cttttgttgt tgggtattag acctaaacga ctcatggtta 661 agcaggagaa tgattcagag aacgacaggt ttcttcaggc cgtaccagga ttggaacagg 721 aaacccctcc ccactatgga tgattccaaa ttaaagaagg tagccaacat attcttgtgc 781 actttgtctt cactattcac cagacccatc aaggacataa tagggaagtt gaaacctctt 841 aacatcctta atattctggc tacatgtgat tggaccttcg caggcatagt ggaatcttta 901 atactcttag cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc 961 gcccccttgc taggtgatta cgaactgcaa ggacctgagg accttgcagt ggaactggtc 1021 ccaatagtga tgggggggat aggtttggtg ctaggattta ccaaagagaa aattggaaag 1081 atgctatcat ccgctgcatc cactttaaga gcttgtaaag accttggtgc atacggactg 1141 gaaatcttaa aattggtcat gaagtggttc ttcccaaaga aagaggaagt aaatgaattg 1201 gctatggtga gatccatcga ggacgcagtg ctggacctcg aggcaattga aaacaaccac 1261 atgaccaccc tactcaaaga caaagacagc ttggcaacct acatgagaac ccttgacctt 1321 gaggaggaga aagccagaaa actctcaacc aaatctgctt caccagatat tgtgggcaca 1381 atcaactctc ttctggcaag aatcgccgct gcacgctccc tagtgcatcg ggcgaaagaa 1441 gagctttcca gcaggccgag acctgtcgtt gtgatgatat cgggaaggcc agggataggg 1501 aaaactcacc ttgccaggga gctggccaag aagatcgcgg cctccctcac aggggaccag 1561 cgcgtgggtc ttatcccacg caatggtgtc gatcactggg acgcatacaa gggcgaaaga 1621 gttgtcttat gggacgacta tggaatgagc aaccccatcc atgatgccct caggttgcag 1681 gagcttgctg acacttgccc cctcacgcta aattgtgaca gaattgagaa caaagggaaa 1741 gtctttgaca gtgatgccat aattatcacc accaatctgg ccaacccagc accactggat 1801 tatgtcaact tcgaagcgtg ctcgagacgt attgacttcc tcgtgtacgc agaagcccct 1861 gaggtggaga aggcaaagcg cgacttccca ggtcaacctg acatgtggaa gaacgctttc 1921 agtcctgact tctcacacat aaaactgtca ttggctccac agggtggttt tgacaagaac 1981 ggcaacaccc cgcatgggaa aggggtcatg aagaccctca ccactggctc cctcatcgcc 2041 cgagcgtcag ggttactcca tgagaggcta gatgaatatg aactgcaagg cccggccctc 2101 acaactctca actgtgtcca tcagcccata cttgctttta gacagcttgc tgctgaaaac 2161 aagtatgggc tgatggacac aatgagagtt ggaaaacaac tcaaggatgt caagaccatg 2221 tcagacctca aacaggcact caagaacatc gcgatcaaga agtgccagat agtgtacgat 2281 ggtggcacct acacacttga ggccgatggc aagggtagtg tgaaagttga caaagtgcag 2341 agtgccactg tgcagaccaa caatgaacta gccggtgccc tacaccacct aaggtgcgct 2401 agaatcaggt actatgttaa gtgcgtccag gaggcactgt attccatcat ccagatcgct 2461 ggggctgcat tcgtcaccac gcgcatcgct aagcgcatga atatacagaa tctctggtcc 2521 aaaccacagg tggaagatac agaagagatg accaacaaag atggttgcct aaaacccaaa 2581 gatgatgaag agtttgtcgt ctcatccgac gacatcaaaa ctgagggcaa gaaagggaag 2641 aacaagtctc atcgtattcc tcatcactgg gccttttcaa gcaaagggct cagtgatgag 2701 gaatacgatg agtacaagag aattagagaa gaaaggaatg gtaagtattc catagaagag 2761 taccttcagg acagagacag gtactcttct atggaagtgg ccattaccag agcaaccgaa 2821 gaggacttct gtgaggaaga agaggccaaa atccggcaga gaatctttag accaacaagg 2881 aaacaacgca aagaagagag ggcctctctc ggcttggtca caggctctga aatcaggaag 2941 agaaacccag aagacttcaa acccaaggga aagctgtggg ctgatgatga cagaagtgtt 3001 gactacaatg agaaactcaa ttttgaggcc ccaccaagca tctggtcgcg gatagtcaac 3061 tttggttcag gctggggctt ctgggtctcc cccagtctgt ttataacatc aacccatgtc 3121 ataccccaag gtgcaaaaga gttcttcgga gtccctatca agcaaatcca gatacacaaa 3181 tcaggtgaat tctgccgatt gagattccca aagccaatca ggactgatgt gacgggcatg 3241 atcctagaag aaggtgcgcc cgaggggacc gtggccacac tgctcatcaa gagaccaact 3301 ggagagctca tgcctctggc agccagaatg gggacccatg caaccatgaa aattcagggg 3361 cgcacagttg gagggcaaat gggtatgctc ctgacaggat ccaacgccaa gagcatggac 3421 ctaggcacaa caccaggcga ctgcggctgc ccctacatct acaagagggg gaatgactac 3481 gtggtcatag gagtccatac ggccgctgcc cgtggaggaa acactgtcat atgtgccacc 3541 caggggagtg agggagaggc cacacttgaa ggaggtgaca gtaaagggac atactgtggc 3601 gcaccaatct tgggcccagg gagcgctccg aagctcagta ccaagactaa gttttggaga 3661 tcatccacaa cacctctacc acctggtaca tatgaaccag cctacctcgg tggcaaagac 3721 cccagggttg aaggtggtcc atctttgcag caagtgttgc gagaccagct aaaaccattc 3781 acagaaccca gaggcaggcc accaagacca aatgtgttgg aagctgccaa gaaaaccatc 3841 atcaatgtcc ttgagcaaac aattgatcca ccccaaaaat ggtcatttgc gcaagcttgc 3901 gcatcccttg acaaaaccac ctccagcggc cacccgcacc acatgcggaa aaacgattgt 3961 tggaatgggg aatccttcac gggaaaattg gctgaccaag cctccaaggc caacctaatg 4021 tttgaagagg gaaagaacat gactccagtc tatacaggtg cacttaagga tgagttggta 4081 aagaccgata aagtttatgg taagatcaag aagaggcttc tgtggggttc agacctggcg 4141 accatgatac ggtgcgcccg agcttttgga ggccttatgg atgaactcaa ggcgcactgt 4201 gtcacacttc ctgtcagagt tggtatgaac atgaatgagg atggccccat catctttgag 4261 aagcactcca ggtatagata ccactatgat gctgattatt cccggtggga ctcaacacaa 4321 caaagggatg tgctagcagc agcactagaa atcatggtta agttctctcc agaaccacac 4381 ctggcccagg tagttgcaga ggacctcctt tcccctagtg tgatggatgt aggtgacttt 4441 caaatatcaa taagtgaggg tcttccctct ggggtacctt gtacctccca gtggaattcc 4501 atcgcccact ggctcctcac tctttgtgca ctctctgaag tcacggacct gtcccctgac 4561 atcattcagg ccaactccct tttctccttc tatggtgatg atgagattgt gagcacagac 4621 ataaagttgg acccagagaa gctgacagca aaactcaagg agtacgggtt gaaaccaacc 4681 cgccccgaca aaactgaggg accccttgtt atctctgaag acctggatgg cctgacattc 4741 ctccggagaa ctgtgacccg tgatccggct ggctggtttg gaaaattgga acaaagttca 4801 attctcagac aaatgtactg gaccaggggt cccaaccatg aagatccatt tgaaacaatg 4861 ataccacact cccaaagacc catacaattg atgtccttgc tgggcgaggc tgcactccac 4921 ggcccggcat tctatagcca actcagcaaa ttagtcattg cagagttgaa ggaaggtggc 4981 atggattttt acgtgcccag acaagagcca atgttcaggt ggatgagatt ctcagatctg 5041 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag 5101 tgacgccaac ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt 5161 tatggctctg gagcccgttg ttggtgccgc cattgcggca cctgtagcgg gccagcaaaa 5221 tgtaattgac ccctggatta gaaataattt tgtacaagcc cctggtggag agtttacagt 5281 atcccctaga aacgctccag gtgaaatact atggagcgcg cccttgggcc ctgatctaaa 5341 tccctaccta tcccatctgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca 5401 ggtaattctc gcggggaacg cgttcaccgc cgggaaggtc atatttgcag cagttccacc 5461 aaattttcca actgaaggct tgagccccag ccaggttact atgttccccc atatagtagt 5521 agatgttagg caactagaac ctgtgttgat tcctttaccc gatgttagga ataatttcta 5581 tcattataat caatcaaatg accccaccat taagttgata gcaatgttgt atacaccact 5641 tagggctaat aatgctgggg atgatgtctt cacagtttct tgccgggtcc tcacgagacc 5701 atcccccgat tttgatttca tatttctagt gccacccaca gttgaatcaa gaactaaacc 5761 attctctgtc ccagttttaa ctgttgagga gatgaccagt tcaagattcc ccattccttt 5821 ggaaaagttg ttcacgggtc ccagcagtgc ctttgttgtc caaccacaaa acggcaggtg 5881 cacgactgac ggcgtgctcc taggcaccac ccaactgtct cctgtcaaca tctgtacctt 5941 cagaggagat gtcacccaca tcacaggtag tcataactac acaatgaatt tggcttctca 6001 gaattggagc aatgatgacc caacagaaga aatcccagcc cctctaggaa ctccagactt 6061 tgtggggaag attcaaggcg tgctcactca aaccacaagg acagatggct caacacgcgg 6121 ccacaaagcc acagtgtaca ctgggagcgc cgacttttct ccaaaactgg gtagagttca 6181 atttgaaact gacacaaacc atgattttga agccaaccaa aacacaaagt tcaccccagt 6241 cggtgtcatc caagatggta gcaccactca ccgaaatgaa ccccagcagt gggtgctccc 6301 aagttactca ggcagaaata ctcataatgt gcatctggcc cccgctgtag ctcccacttt 6361 tccgggtgag caacttctct tcttcagatc caccatgccc ggatgcagcg ggtaccccaa 6421 catggatttg gactgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc 6481 cccagcacaa tctgatgtgg ctctgctaag atttgtgaat ccagacacag gtagggtttt 6541 gtttgagtgt aagcttcata aatcaggcta tgttacagtg gctcacactg gccaacatga 6601 tttggttatt ccccccaatg gttattttag atttgattcc tgggtcaacc agttctacac 6661 gcttgccccc atgggaaatg gaacggggcg tagacgtgca gtataatggc tggagctttc 6721 tttgctggat tggcatctga tgtcctaggc tctggacttg gttcccttat caatgctggg 6781 gctggggcca tcaaccaaaa agttgatttt gaaaataaca gaaaattgca acaagcatcc 6841 ttccaattta gcagcaattt acaacaggct tcctttcaac atgacaaaga gatgctccaa 6901 gcacaaattg aggccaccaa aaagctacaa caggaaatga tgaaagttaa gcaggcaatg 6961 ctcctagagg gtgggttctc tgagacagat gcagcccgcg gggcaatcaa cgcccccatg 7021 acaaaagctt tggactggag cgggacaagg tactgggcac ccgaagctag gactacaaca 7081 tacaatgcag gccgcttttc cacccctcaa ccatcggggg cactgccagg aagagctaat 7141 cttagggatg ctgtccctgc tcggggttcc tctagtaaat cttctaattc ttctactgct 7201 acttctgtgt actcaaatca aactacttca acgagacttg gttctacagc tggttctggc 7261 accagtgtct cgagcctccc gccaactgca aggaccagga gctgggttga ggatcaaagt 7321 aggaatttgt cacctttcat gaggggggcc cacaacatat cgtttgtcac cccaccatct 7381 agcagatcct ctagccaagg cacagtctca accgtgccta aagaggtttt ggactcctgg 7441 actggcgctt tcaacacgcg caggcagcca ctcttcgctc acattcgtaa gcgaggggag 7501 tcacgcgcgt aa //