Typing tool
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Typing tool
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Complete norovirus genomes
| MN227777 | GIX.1 | |
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| GII.P15 |
ORF1: 4..5100
ORF2: 5081..6748
ORF3: 6748..7479
LOCUS MN227777 7546 bp RNA linear VRL 03-AUG-2019
DEFINITION Norovirus GIX strain Shenandoah0111 isolate
Hu/US/2017/GII.P15-GIX.1/Shenandoah0111, complete genome.
ACCESSION MN227777
VERSION MN227777.1
KEYWORDS .
SOURCE Norovirus GIX
ORGANISM Norovirus GIX
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7546)
AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7546
/organism="Norovirus GIX"
/mol_type="genomic RNA"
/strain="Shenandoah0111"
/isolate="Hu/US/2017/GII.P15-GIX.1/Shenandoah0111"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:2594528"
/country="USA"
/collection_date="09-May-2018"
/note="genotype: GIX.1-GII.P15"
gene 4..5100
/gene="ORF1"
CDS 4..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QDR48020.1"
/translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK
ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST
VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP
AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ
GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR
RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL
ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP
DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL
TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN
VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL
LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS
SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK
YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT
GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN
LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC
GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL
GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR
GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN
GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG
TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS
TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS
QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE
YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
mat_peptide 4..1005
/gene="ORF1"
/product="p48"
mat_peptide 1006..2103
/gene="ORF1"
/product="NTPase"
mat_peptide 2104..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6748
/gene="ORF2"
CDS 5081..6748
/gene="ORF2"
/codon_start=1
/product="VP1"
/protein_id="QDR48021.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6748..7479
/gene="ORF3"
CDS 6748..7479
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="QDR48022.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTHV
PSSTSSSSGASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD
SWTPSFNTKHLPLFAHVRKRGQSQV"
ORIGIN
1 tgaatgaaga tggcgtcgaa tgacgtcgtt actgcccttg gcagccaaaa agctaccaat
61 gacagctata gcacacctcc ccccaacaag gaggaggcta gtgtgcttgc caacgttaaa
121 gttggcttta aaaagatcct cggggccgtc cctaaggctc cgaaacagca tggcagcata
181 caaaaaccgc cgatcgtcga gatcgatggt gtggccatgc gtgtaccctc tcccccccca
241 aacggtgagg acgcagtcca cttcgtgaag gaaacggaga ccatcaaggg actgccagat
301 ttgtccaccg tggagaacga gtctgaacac tccccgtaca cagtcccccc gttgagtgag
361 agggagcaca ggccagcaac agagccattg cccggcacta tacttgagat gtgggatggt
421 gagttctacc actactccat atacgtggac aatggcaagg cccttggagt tcacaaacca
481 ccagcagcaa ttagcctagc aacgatagat ttaacaccta tatcgttgta ctggagaccg
541 gtttacacac cgccgtacct tgtccaccca gagacgctca agggactggc tggcgaaaag
601 ttcccctaca cggccttcag caacaactgc tacaacttct gttgctgggt tctggacctc
661 aatgattcgt ggctgaaccg gagatccata actagaacaa ctggtttctt caaaccctac
721 caatcctgga acaggaagcc cctcccaact gtggatgatg gcaagatcaa gaaggtcgcg
781 aatgcagttc tgtgtgccct aggatcactt ttctccaagc ccattaagga cctccttggc
841 aaattaaaac ccctcaatct cctgaacttg cttgcatcat gtgactggac ctttgctggc
901 gtggtggaaa cagtcattct tgctgcagag ctcttcaatg tcttttggac tccacctgat
961 gtctccaact tcattgcttc cataattggc gacttcgaga tgcaaggacc agaggatctt
1021 gctgtggagc ttgtccctgt tatcatggga ggcattggta tggtgttagg gtttacagct
1081 gagaagatag ggcgtatgtt atcatctgca gcatccaccc tcagggcttg taaggacctt
1141 ggcaattacg ccttagacat cctgaaacta gtcatgaagt ggtttttccc taaaaaggag
1201 gaaaaggccg agatggaaac cctgagggcc attgaggacg ctgtccttga catggaggca
1261 attggaaaca accacctcac aacgctgctc aaagacaaag atagcttgag cgcctacatg
1321 aagaccttgg acatggagga ggagaaggcc aggaggctct ccactaaatc atcatcaccc
1381 gacattgttg gtaccatcaa cgcgatcctc gcacgcattg ctgccgcaag gtcactccta
1441 cacaaagcca aagaggaaat gttcagtcga gcgaggcctg ttgtcgttat ggtgtctgga
1501 agacccggca tcgggaagac atatctggct agacagcttg ccaaatcgat tgcgaacagc
1561 atgagtggtg atcagagagt gggactcgtc ccccgcaatg gggttgacca ctgggatgcc
1621 tataggggtg aaagagttgt cctatgggat gactacggca tgggaaatac aatcaaagat
1681 gccctgaccc tacaagagtt ggctgacacc tgcccagtta ccctcaactg tgacaggatc
1741 gaaaacaagg ggaagatgtt tgacagtgat gtcatcataa taacaaccaa tcttgtcaac
1801 cccgctcccc tcgattatgt taattttgag gcttgctgta ggcgaattga cttccttgtt
1861 tatgccgagg caccggacat tgagaaagtc aaaaaggatt tccctggaca acctgacatg
1921 tggcgtgacc attttaaagc tgactcgtca cacataaagt tatcactagc cccacagggt
1981 ggctttgaca agaacggaaa cacccctcac gggaagggca ccatgaaaac tctcacgcta
2041 cactcactca ctgcacgtgt gatgggttta gtgtgtgaga ggaaggatga gttccaactg
2101 cagggtgatg aactacaggt ttataacttt gacacaaaca aggtctctgc atttagaaaa
2161 ctagcagctg acaacaagta cagctttgtg gagacaatga aagtcggtgc agtcctcaag
2221 aatgtaaaaa ccctggaaga tctgaaatct gccctcaagg gagttaaatt caaagagtgt
2281 gaaataatct acaagggggc caagtataga gtcgcctcgg atggttgtgg cagtgtctca
2341 gtttccaaga tcaaggatgt tgtgtcgcag acatccaacg aagtgcacac agcgctcctg
2401 agattgaggc aagcccgggc caggtattac atcagctgct tccaagacct catatacacc
2461 ctaatacagg ttgctggagc ctcatttgtg gtacatagga tctcaaagag attctcatgg
2521 gaccgctgga tcaaacccag tgacagccct caggaggaag aacaacccag cagtgaggtg
2581 gccacaggga gatgggaaat tgagccaaaa gacacagacc ctgaaggcaa aaagggtaaa
2641 aacaagaagg gaaggggaag gaaacacacg gctttctcta gtaagggtct tagtgatgaa
2701 gagtatgatg agttcaaaag aatcagagag gagaagaacg gcaaatactc catagaagaa
2761 tacctccagg accgtgatag attttatgag gaagtggcag ttgcaagggc aacggaagag
2821 gacttctgtg aggaagaagt ggcaaagatc agacagagaa tcttcaggcc cacaaagaag
2881 cagaggaagg aggagcgtgg cgtcctaggg ctggtcactg gttcagaaat caggaagaga
2941 agaccagatg acttccagcc taaaggtaac ttgtgggctg atgacaccag gagcgtggac
3001 tacaacgaaa agctggagtt tgaggcccct ccgagcgtgt ggtcacgtat cgtacccctc
3061 ggcactggct ggggtttctg ggtctcctcc aaccttctca taacaacaac acatgtcctg
3121 ccaaaaggat tgaaggagct gttcggggtt gatatcaaac aagtccagat acacaagtca
3181 ggtgagttct gcaggttcag gtttccaaga ccaatcagac cagatgtcac aggcctcatc
3241 cttgaagaag gggcccctga aggtacggtg tgttctatcc ttgtcaaaag accgactgga
3301 gagatgatac cacttgcagt gaggatgggc acccacgctt ccatgaaaat ccagggtaga
3361 acggttggtg gtcaaatggg catgttgctc acaggagcaa acgccaaaaa catggatttg
3421 ggcacgaacc ctggtgattg tggatgcccg tacattttta agaggggcaa tgacattgtg
3481 gtagctgggg tccacactgc agctgcacgg ggtggcaaca ctgtgatctg tgccacgcaa
3541 ggagctgacg gagaggccgt ccttgaagga ggagaggaca aagggacgta ctgtggtgcc
3601 ccaatacttg gactcgggaa ggctcccaaa ctcagtacca agacaaagtt ctggcgatcc
3661 tcccctgatg cgcttccccc gggaacgtat gagccagcat acctaggtgg aaaggaccca
3721 agggttgaga agggcccgtc actccagcag gtcatgagag aacaacttaa acctttcacc
3781 gaacccagag gaaaaccccc aaaacccaac gttcttgatg aggcaaagaa aactgtgatg
3841 aacgtgttgg agcagactat aaaccctgcc aaaccctggt catactccca agcatgtgct
3901 tcgcttgaca agacaacttc aagtggtagc ccgcaccacc tgagaaagaa tgatcattgg
3961 aatggtgaat cttttaccgg tcctttggcc gatcaagctt caaaagcaaa cctaatgtat
4021 gaacaggcaa aacacatgag ccccgtttac actgcggccc ttaaagatga actggtcaag
4081 actgataaga tctacaagaa aataaagaag aggctgctgt ggggctctga cctgggtacc
4141 atggtcaggt gtgctagggc ttttggtggg ttgatggata gcatgaaaga gagttgtgtg
4201 atgttgccct gcagagttgg catgaacatg aatgaagatg gaccaatcat ttttgacaaa
4261 catgcaaagt acaaatatca ctatgatgca gattactcca gatgggattc cacacaacaa
4321 aggagcatct tatctgctgc catggaggtt atggtgaagt tctcagctga accggaactg
4381 gcacaagtgg tcgctgaaga cttgctcgcc ccaagccaac tcgacgtggg cgactttgtg
4441 gtgtcagtcc aagaaggtct cccctcaggt gttccgtgca cttcccaatg gaactccata
4501 gcacattgga tcatcaccct tagtgcaatg gcagaagttt ctggtctctc cccagatgtg
4561 atccaagctc actcatgctt ctctttctat ggtgatgatg agatagttag cacagacatc
4621 aacttggacc cagcaaagct aaccttaaaa ctcagggaat atggattggt ccccaccaga
4681 ccagacaaaa ctgaaggccc attagtcatc acagaggatc tccatggatt gacctttcta
4741 cgcagacaca tcacacgaga tcctgctgga tggtttggaa aattagacca ggattcaatc
4801 ttgaggcaac tctattggac tagaggaccc aaccatgaaa acccctacga gtgcatggtc
4861 ccacactcgc agcgcgcaac tcagttaatg gcgctgttgg gtgaggcatc attgcacggt
4921 ccccagttct acaagaaagt cagcaagatg gttatcaatg agattaagag tggtggtctg
4981 gaattttacg tgcccagaca ggaggccatg ttcagatgga tgagattctc tgacctcagc
5041 acgtgggagg gcgatcgcaa tctggctccc gacggtgtga atgaggatgg cgtcgagtga
5101 cgcgcccgtt tctggcaccg atggtgcggc aggactcgtc ccagagagtc aacaagaagt
5161 cttgccttta gagcccgtcg cgggagttca gctggctgct cccgtagcag ggcaaagtaa
5221 tataattgac ccctggatta gaatgaattt tgtgcaagcc ccggccggtg agttcactgt
5281 ttcccctcgg aacgcaccgg gtgaggtgct tattgattta gaattaggac cagaattaaa
5341 tccctatctc aatcaccttg cgagaatgta caatgggtat gtgggaggaa tggaggtgga
5401 agttgtcctt gccgggaatg cgttcacggc gggtaagatc ttattcgcag ctgtgccccc
5461 cagcttccca acccacggca tttctgcagc acaggcaact atgttaccac atgtgattgt
5521 ggatgtcagg cagctggagc ctgtccggct ccctcttcct gatgtcagga atgtgatgtt
5581 ccatttctgt caagaaaata aggagccgcg catgagaatt gtggcaatat tgtacacccc
5641 tctccgtgcc aatggtgcgg gtgatgatgt cttcactgtc tcatgtcgtg tgctaacaag
5701 gccctcacca gattttgact ttattttctt ggtccccccc tctgtagaga gtaagttgaa
5761 acagtttacc cttccaaacc tgcagccaaa tgaaatgacc aattcaagat tccccactgg
5821 tatcacacaa ctctacacca gtccaaatac caatttggtt gtccagttcc aaaatggcag
5881 gtgtctgctt gatggtacac tcctcggcac cacccctgtc agagctgctg acatctgcag
5941 tttcagagga gtcacctcaa ctgaagttga tgcaactgac agccccagag tggcagggtc
6001 ccatagaatt atggtgcagc tcaaggagcc agatggagag gagttttcac ccacaggtcc
6061 taaccctgcc cctgttggca ctccagactt tcaagcagcc atatttggca cccttagtca
6121 aagaaacact ggcggggctg ggcagaactc caacagagcc cacttcgcat acttctatac
6181 tagaaacccc acatttgcac caggtatagg gacagttgtg ttttcttttg atactactga
6241 ttttcaaaat cgtcaaccta ctaaattctc tccttctggt gtgtttgatg atgattcttc
6301 tgaacctttt aatcaatttt ctctaccata ctataatgga tcactcggtg cagtggatgc
6361 tggaaaacta gctccgcctg tagcgcccaa ctacccaggt gagcagattc tttattttag
6421 agggaatatt cccttcaaag gtgggtatgg agagggtgaa attgatagct tgcttcccca
6481 ggagtggatc acccactttt atgcagagca ggctcctaca caaggtgacg cagccctgct
6541 gcgttactac aaccctgaca ctggcagagt cctctttgag tgcaaactcc accgcgaggg
6601 attcatcaca atcaattaca cagggtccaa tgctcttgct gtaccagtca atggagtctt
6661 caggtttgag ggctgggtta acaaattcta cacactgacc cccatgggaa atggcaacgg
6721 ccgcaggggt agaagaaggg agttataatg gctggagctt tctttgcagg tcttgcttct
6781 gatgttctcg gcagcggctt gtcttcactt atcggtgccg gtgccaatgc cataaatcaa
6841 aaggttgaat atgattacaa taggcacttg cagtctgctt ctttccagca tgataaggat
6901 atgctcaact cacaggtgga agccacaaag cacttacaaa gagagatgat ggccatcaag
6961 gaaggcatgc tgctcaaggg tgggttctcc cccactgatg cagcaagagg agctgtcaac
7021 gcccctatga cacaaatttt ggattggaat ggcaccagat actgggcccc gggtgcaatg
7081 aaaaccacgg cttactcagg ccgttttgtt agccaatcca ctcacaggcc tattcccaat
7141 gttgttcaca agagtgatgg acccatacac caaactgggt caaccacagg gtccatttct
7201 tctctctcca catcatccac ccatgttcca tcatccacat cctcatctag tggtgcttct
7261 agaacaaggg actgggtgtc tgaacagcaa agactcagcc ctttcatgag aggctctctt
7321 cacactgcat atgtgactcc tccctcaagc tctgcctcct cagtaagctc tgtttctaca
7381 gtcccacact atgttttaga ttcatggact ccttctttta acaccaaaca tctaccattg
7441 tttgctcatg ttagaaaaag gggacaatct caagtttaac ctaccactca tggtttgatt
7501 gatttgtttt gtaattagtg aaatgttgat tcttcctaat tcggca
//