Typing tool
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Typing tool
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Complete norovirus genomes
| MN227776 | GIX.1 | |
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| GII.P15 |
ORF1: 4..5100
ORF2: 5081..6748
ORF3: 6748..7479
LOCUS MN227776 7535 bp RNA linear VRL 03-AUG-2019
DEFINITION Norovirus GIX strain Providence0110 isolate
Hu/US/2017/GII.P15-GIX.1/Providence0110, complete genome.
ACCESSION MN227776
VERSION MN227776.1
KEYWORDS .
SOURCE Norovirus GIX
ORGANISM Norovirus GIX
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7535)
AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7535
/organism="Norovirus GIX"
/mol_type="genomic RNA"
/strain="Providence0110"
/isolate="Hu/US/2017/GII.P15-GIX.1/Providence0110"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:2594528"
/country="USA"
/collection_date="19-Jan-2018"
/note="genotype: GIX.1-GII.P15"
gene 4..5100
/gene="ORF1"
CDS 4..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QDR48017.1"
/translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK
ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVRFVKETETIKGLPDLST
VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP
AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ
GPEDIAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR
RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL
ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP
DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL
TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN
VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTAL
LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS
SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK
YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT
GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN
LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC
GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL
GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR
GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN
GESFTGPLADQASKANLVYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG
TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHSKYKYHYDADYSRWDS
TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS
QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE
YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
mat_peptide 4..1005
/gene="ORF1"
/product="p48"
mat_peptide 1006..2103
/gene="ORF1"
/product="NTPase"
mat_peptide 2104..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6748
/gene="ORF2"
CDS 5081..6748
/gene="ORF2"
/codon_start=1
/product="VP1"
/protein_id="QDR48018.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSSRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6748..7479
/gene="ORF3"
CDS 6748..7479
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="QDR48019.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV
PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHHVLD
SWTPSFNTKHLPLFAHVRKRGQSQV"
ORIGIN
1 tgaatgaaga tggcgtcgaa tgacgtcgtt actgcccttg gcagccagaa agctaccaat
61 gacagctata gcacaccccc ccccaacaag gaggaggcta gtgtgcttgc caacgtcaaa
121 gttggcttta aaaagatcct cggggccgtc cctaaggctc cgaaacagca tggcagcata
181 caaaaaccgc cgatcgttga gatcgatggt gtggccatgc gtgtaccctc tcccccccca
241 aacggcgagg acgcagtccg cttcgtgaag gaaacggaga ccatcaaggg actaccagat
301 ttgtccaccg tggagaacga atctgaacac tccccgtaca cagtcccccc gttgagtgag
361 agggagcaca ggccagcaac agagccattg cccggcacta tacttgagat gtgggatggt
421 gagttctatc actactccat atacgtggac aatggcaagg cccttggtgt tcacaaacca
481 ccagcagcaa ttagcctagc aacgatagat ttgacaccta tatcgttgta ctggagaccg
541 gtttacacac cgccgtacct tgtccaccca gagacgctca agggactggc tggcgaaaag
601 tttccctaca cggccttcag caacaactgc tacaacttct gttgctgggt tctggacctc
661 aatgattcat ggttgaaccg gagatccata actagaacaa ctggattctt caaaccctac
721 caatcctgga ataggaaacc ccttccaact gtggatgatg gcaagatcaa gaaggtcgcg
781 aatgcagttc tgtgcgccct aggatcactt ttctccaagc ccattaaaga cctccttggt
841 aaattgaaac ccctcaatct cctgaacttg cttgcatcat gtgactggac ctttgctggt
901 gtggtggaga cagttattct tgcagcagag ctcttcaatg tcttttggac tccacctgat
961 gtctccaact tcattgcttc cataattggc gacttcgaga tgcaaggacc agaggatatt
1021 gctgtggagc tcgttcctgt tatcatggga ggcattggta tggtgttggg gttcacagct
1081 gagaagatag ggcgtatgtt atcatctgca gcatccactc tcagggcttg taaggacctt
1141 ggcaattacg ccttagacat cctgaaatta gtcatgaagt ggtttttccc taaaaaggag
1201 gaaaaggccg agatggaaac cctgagggcc attgaggatg ctgtccttga catggaggca
1261 attggaaaca accacctcac aacactgctc aaagacaaag atagcttgag cgcctacatg
1321 aagaccttag acatggagga ggagaaggct aggaggctct ccactaaatc atcatcaccc
1381 gacattgttg gcaccatcaa cgcgatcctc gcacgcattg ccgccgcaag gtcactccta
1441 cacaaagcca aagaggaaat gttcagtcga gcgaggcctg ttgtcgttat ggtgtctgga
1501 agacccggca tcgggaagac atatctggct agacagcttg ccaaatcgat tgcaaacagc
1561 atgagtggtg atcagagagt gggactcgtc ccccgcaatg gggttgacca ctgggatgct
1621 tataggggtg aaagagttgt cctatgggat gactatggca tgggaaatac aatcaaagat
1681 gccctgaccc tacaagagtt ggctgacacc tgcccagtta ccctcaattg tgacaggatc
1741 gaaaacaagg ggaagatgtt tgacagtgat gtcatcataa taacaaccaa tcttgtcaac
1801 cccgctcccc tcgattatgt taattttgag gcttgctgta ggcgaattga cttccttgtt
1861 tatgccgagg caccggacat tgagaaagtc aaaaaggatt tccctggaca acctgacatg
1921 tggcgtgatc attttaaagc tgactcgtca cacataaagt tgtcactagc cccacagggt
1981 ggctttgaca agaacggaaa cacccctcac gggaagggca ccatgaaaac tctcacgcta
2041 cactcactca ctgcacgtgt gatgggttta gtgtgtgaga ggaaggatga gttccaacta
2101 cagggtgatg aactacaggt ttataacttt gacacaaaca aggtctctgc atttagaaaa
2161 ctagcagctg acaacaagta tagctttgtg gagacaatga aagtcggtgc agtcctcaag
2221 aacgtaaaaa ctctggaaga tctgaagtct gccctcaagg gagtcaaatt caaagagtgt
2281 gaaataattt acaagggggc caagtataga gtcgcctcgg atggctgtgg cagtgtctca
2341 gtttccaaga tcaaggatgt tgtgtcgcag acagccaatg aagtgcacac agctctcctg
2401 agattgaggc aagcccgggc caggtattac atcagctgct tccaagacct catatacacc
2461 ctaatacagg ttgctggagc ctcatttgtg gtgcatagga tctcaaagag attctcatgg
2521 gaccgctgga tcaagcccag tgatagccct caggaggaag aacaacccag cagtgaggtg
2581 gccacaggga gatgggaaat tgagccaaaa gacacagacc ctgaaggcaa aaagggtaaa
2641 aataagaaag gaaggggaag gaaacacaca gctttctcta gtaagggtct tagtgatgaa
2701 gagtatgatg agttcaaaag aatcagagag gaaaagaacg gcaaatactc catagaagaa
2761 tacctccagg accgtgacag attttatgag gaagtggcag ttgcaagggc aacggaagag
2821 gacttctgtg aggaagaagt ggcaaagatc agacagagaa tcttcaggcc cacaaagaag
2881 cagaggaagg aggagcgagg cgtcctaggg ctggttactg gttcagaaat caggaagaga
2941 agaccagatg actttcagcc taaaggcaac ttgtgggctg atgacaccag gagcgtggac
3001 tacaacgaaa agctggagtt tgaggcccct ccaagcgtgt ggtcacgtat cgtacccctc
3061 ggcactggct ggggtttctg ggtctcctcc aacctcctca taacaacgac acacgttctg
3121 ccaaaaggat tgaaggagct gttcggggtt gacatcaaac aagtccagat acacaagtca
3181 ggtgagttct gcaggttcag gtttccaaga ccaatcagac cagatgtcac aggcctcatc
3241 cttgaagaag gggcccctga aggcacggtg tgttccatcc ttgtcaaaag accgactgga
3301 gagatgatac cacttgcagt gaggatgggc acccatgctt ccatgaaaat ccagggtaga
3361 acggttggtg gtcaaatggg catgttgctc acaggagcaa atgccaaaaa catggatttg
3421 ggcacgaacc ctggtgattg tggatgcccg tacattttta agaggggcaa tgacattgtg
3481 gtggctgggg ttcacactgc agctgcgcgg ggtggcaaca ctgtgatctg tgccacgcaa
3541 ggagctgatg gagaggccgt ccttgaagga ggagaggaca aagggacgta ctgtggtgcc
3601 ccaatacttg gacttgggaa ggcccccaaa ctcagtacca agacaaagtt ctggcgatcc
3661 tcccctgatg cgcttccccc gggaacgtat gagccagcat acctaggtgg aaaggaccca
3721 agggttgaga agggcccgtc gcttcagcag gtcatgagag aacaacttaa acccttcacc
3781 gaacccagag gaaaaccccc aaaacccaac gttcttgatg aggcaaagaa aactgtgatg
3841 aacgtgttgg agcagactat aaaccctgcc aaaccctggt catactccca agcatgtgct
3901 tcgcttgaca agacaacttc aagtggtagc ccgcaccacc tgagaaagaa tgatcattgg
3961 aatggtgaat ctttcaccgg tcctttggcc gatcaagctt caaaagcaaa cctagtgtat
4021 gaacaggcaa aacacatgag ccccgtttac actgcagccc tcaaagatga gctggtcaaa
4081 actgataaga tttacaagaa aataaagaag aggctgctgt ggggttctga tctgggtacc
4141 atggtcaggt gtgccagggc ttttggtggg ttgatggata gcatgaaaga gagttgtgtg
4201 atgttaccct gcagagttgg catgaacatg aatgaagatg gaccaatcat ttttgacaaa
4261 cattcaaaat acaaatatca ctatgatgca gattactcca gatgggattc cacacaacaa
4321 aggagcatct tatctgctgc catggaggtt atggtgaagt tctcagctga accagagctg
4381 gcacaagtgg tcgctgaaga cttgctcgcc ccaagccaac tcgacgtggg cgattttgtg
4441 gtgtcagtcc aagaaggtct cccctcaggt gttccgtgca cttcccaatg gaactccata
4501 gcacattgga tcattacact tagtgcaatg gcagaagttt ctggtctctc cccagatgtg
4561 atccaggctc attcatgctt ctctttctat ggtgatgatg agatagttag cacagacatc
4621 aacttagacc cagcaaagct aaccttaaaa ctcagggaat atgggttggt ccccaccaga
4681 ccagacaaga ctgaaggccc attagtcatc acagaggacc tccatgggtt gaccttccta
4741 cgcagacaca tcacacgaga tcctgctgga tggtttggaa aattagatca ggattcaatc
4801 ttaaggcaac tctattggac tagagggccc aaccatgaga acccctacga atgcatggtc
4861 ccacactcac agcgcgcaac ccagttaatg gcgctgttgg gtgaggcatc attgcacggc
4921 ccccagttct acaagaaagt cagcaagatg gttatcaatg aaattaagag tggtggtctg
4981 gaattttacg tgcccagaca ggaggccatg ttcagatgga tgagattctc tgacctcagc
5041 acgtgggagg gcgatcgcaa tctggctccc gacggtgtga atgaggatgg cgtcgagtga
5101 cgcgcccgtt tctggcaccg atggtgcggc aggactcgtc ccagagagtc aacaagaagt
5161 cttgccttta gagcccgtcg cgggagttca gctggctgct cccgtagcag ggcaaagtaa
5221 tataattgac ccctggatta gaatgaattt tgtacaagcc ccggccggtg agttcactgt
5281 ttccccccgg aacgcaccgg gtgaggtgct tattgatttg gaattaggac cagagttaaa
5341 tccctatctc aatcaccttg caagaatgta caatgggtat gtgggaggaa tggaggtgga
5401 agttgtcctt gccgggaatg cgttcacggc gggtaagatc ttattcgcag ctgtgccccc
5461 cagcttccca acccatggca tttctgcagc acaggctact atgttgccac atgtgattgt
5521 ggatgtcagg cagctggagc ctgttcggct ccctcttcct gatgtcagga atgtgatgtt
5581 ccatttctgt caagaaaata aggagccgcg catgagaatt gtggcaatat tgtacacccc
5641 tctccgtgcc aacggtgcgg gtgatgatgt tttcactgtc tcatgtcgtg tgctaacaag
5701 gccctcacca gattttgatt ttattttctt ggtccccccc tctgtagaga gtaagctgaa
5761 acagtttacc cttccaaacc tgcagccaaa tgaaatgacc aattcaagat ttcccactgg
5821 tatcacacaa ctttacacca gtccaaacac caatttggtt gtccagttcc aaaatggcag
5881 gtgtctgctt gatggcacac ttctcggcac cacccctgtt agagctgctg acatctgcag
5941 tttcagagga gtcacctcaa ctgaagttga tgcaactgac agttccagag tggcagggtc
6001 gcatagaatt atggtgcagc tcaaggagcc agatggagag gagttttcac ctacaggtcc
6061 caaccctgcc cctgttggca ctccagactt tcaagcagcc atatttggca cccttagtca
6121 aagaaacact ggcggggctg ggcagaattc caacagagcc cacttcgcat acttttacac
6181 tagaaaccct acatttgcac caggcatagg gacagttgtg ttttcttttg atactactga
6241 ttttcagaat cgccaaccta ctaaattctc tccttctggt gtgtttgatg atgattcttc
6301 tgaacctttt aatcaatttt ctctaccata ttataatgga tcactcggtg cagtggatgc
6361 tgggaagcta gctccgcctg tagcacccaa ctacccaggt gagcagattc tttattttag
6421 agggaatatc cccttcaaag gtgggtatgg agagggtgaa attgatagct tgctccccca
6481 ggaatggatc acccactttt atgcagagca ggctcctaca caaggtgacg cagccctgct
6541 gcgttactac aaccctgaca ctggcagagt cctctttgag tgcaaactcc accgcgaggg
6601 attcatcaca atcaattaca cagggtccaa tgctcttgct gtaccagtca atggagtctt
6661 caggtttgag ggctgggtta acaaattcta cacactgacc cccatgggaa atggcaatgg
6721 ccgcaggggt agaagaaggg agttataatg gctggagctt tctttgcagg tcttgcttct
6781 gatgttctcg gcagcggttt gtcttcactt atcggtgccg gtgccaatgc cataaatcaa
6841 aaggttgaat atgattacaa taggcacttg cagtcagctt ctttccaaca tgataaggat
6901 atgctcaact cacaggtgga agccacaaag cacttacaaa gggagatgat ggccatcaag
6961 gaaggcatgc tgctcaaggg tgggttctcc cccactgatg cagcaagagg agctgtcaac
7021 gcccctatga cacaaatctt ggattggaat ggcaccagat actgggcccc gggtgcgatg
7081 aaaaccacgg cttactcagg ccgttttgtt agccaatcca ctcataggcc tattcccaat
7141 gttgtgcaca agagtgatgg acccatacac caaaccgggt caaccacagg gtccatttct
7201 tctctctcca catcatccac ccgtgttcca tcatccacat cctcatctag tagtgcttct
7261 agaacaaggg actgggtgtc tgaacagcaa agactcagcc ctttcatgag aggctctctt
7321 cacactgcat atgtgactcc tccctcaagc tctgcctctt cagtaagctc tgtttctaca
7381 gtcccacacc atgttttgga ttcatggacc ccttctttta acaccaaaca tttacctttg
7441 tttgctcatg ttaggaaaag gggacaatct caagtttaat ctaccactca tggtttgatt
7501 gatttgtttt gtaattagtg aaatgttgat tcttt
//