Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MN227775 | GIX.1 | |
|
|---|---|---|---|
| GII.P15 |
ORF1: 4..5100
ORF2: 5081..6748
ORF3: 6748..7479
LOCUS MN227775 7545 bp RNA linear VRL 03-AUG-2019
DEFINITION Norovirus GIX strain Nassau0108 isolate
Hu/US/2017/GII.P15-GIX.1/Nassau0108, complete genome.
ACCESSION MN227775
VERSION MN227775.1
KEYWORDS .
SOURCE Norovirus GIX
ORGANISM Norovirus GIX
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7545)
AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7545
/organism="Norovirus GIX"
/mol_type="genomic RNA"
/strain="Nassau0108"
/isolate="Hu/US/2017/GII.P15-GIX.1/Nassau0108"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:2594528"
/country="USA"
/collection_date="18-May-2018"
/note="genotype: GIX.1-GII.P15"
gene 4..5100
/gene="ORF1"
CDS 4..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QDR48014.1"
/translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK
ILGAVPKAPKQHGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPNLST
VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP
AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLLASCDWSFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ
GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR
RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL
ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP
DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTVKTLTLHSL
TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN
VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTAL
LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS
SEVATGRWEIEPKDIDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK
YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT
GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN
LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC
GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL
GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR
GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN
GESFTGPLADQASKANLMYEQAKHMSPIYTAALKDELVKTDKIYKKIKKRLLWGSDLG
TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS
TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS
QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE
YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
mat_peptide 4..1005
/gene="ORF1"
/product="p48"
mat_peptide 1006..2103
/gene="ORF1"
/product="NTPase"
mat_peptide 2104..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6748
/gene="ORF2"
CDS 5081..6748
/gene="ORF2"
/codon_start=1
/product="VP1"
/protein_id="QDR48015.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6748..7479
/gene="ORF3"
CDS 6748..7479
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="QDR48016.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGLTHQTGSTTGSISSLSTSSTRV
PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPYHVLD
SWTPSFNTKHLPLFAHVRKRGQSQV"
ORIGIN
1 tgaatgaaga tggcgtcgaa tgacgtcgtt actgcccttg gcagccagaa agctaccaat
61 gacagctata gcacaccccc ccccaacaag gaggaggcta gtgtgcttgc caacgttaaa
121 gttggcttta aaaagattct tggggccgtc cctaaggctc cgaaacagca tggtaacaca
181 caaaaaccgc cgatcgtcga gatcgatggt gtggccatgc gtgtaccctc tcccccccca
241 aacggtgagg acgcagtcca cttcgtgaag gaaacggaga ccatcaaggg actgccaaat
301 ttgtccaccg tggagaacga atctgaacac tccccgtata cagtcccacc gttgagtgag
361 agggaacaca ggccagcaac agagccattg cccggcacta tacttgagat gtgggatggt
421 gagttctatc actactccat atacgtggac aatggcaagg cccttggtgt tcacaaacca
481 ccagcagcaa ttagcctagc aacgatagat ttaacaccta tatcgttgta ttggaggccg
541 gtttacacac cgccgtacct tgtccaccca gagacgctca agggactggc tggcgaaaag
601 tttccctata cggccttcag caacaactgc tacaacttct gctgctgggt tctggacctc
661 aatgattcat ggttgaaccg gagatccata actagaacaa ctggattctt caaaccctac
721 caatcctgga ataggaaacc ccttccaact gtggatgatg gcaagatcaa gaaggtcgcg
781 aatgcagttc tgtgcgccct aggatcactc ttctctaagc ccattaagga cctccttggg
841 aagttaaaac ccctcaatct cctgaacttg cttgcatcat gtgactggtc ctttgctggc
901 gtggtggaga cagtcattct tgcagcagag ctctttaatg tcttctggac tccacctgat
961 gtctccaact ttattgcctc cataattggc gacttcgaaa tgcaaggacc agaggatctt
1021 gctgtggagc ttgtccctgt tatcatggga ggcattggta tggtgttagg gtttacagct
1081 gagaagatag ggcgtatgtt atcatctgca gcatccactc tcagggcttg taaggatctt
1141 ggtaattacg ccttagacat cctgaaacta gtcatgaagt ggtttttccc taaaaaggag
1201 gaaaaggccg agatggaaac cctgagggcc attgaggacg ctgtccttga catggaggca
1261 attggaaaca accacctcac aacactgctc aaagacaaag atagcttgag cgcctacatg
1321 aagaccttgg acatggagga ggagaaggcc aggaggctct ccactaaatc atcatcaccc
1381 gacattgttg gcaccatcaa cgcgatcctc gcacgcattg ctgccgcaag gtcactccta
1441 cacaaagcca aagaggaaat gttcagtcga gcgaggcctg ttgtcgtcat ggtgtctgga
1501 agacccggca tcgggaagac atatctggct agacagcttg ccaaatcgat tgcaaacagc
1561 atgagtggtg atcagagagt ggggctcgtc ccccgcaatg gggttgacca ctgggatgcc
1621 tataggggtg aaagagttgt cctatgggat gattatggca tgggaaacac aatcaaagat
1681 gccctgaccc tacaagagtt ggctgacacc tgcccagtca ccctcaactg tgacaggatc
1741 gaaaacaagg ggaagatgtt tgacagcgat gtcatcataa taacaaccaa tctcgtcaac
1801 cccgctcccc tcgattatgt caattttgag gcttgctgta ggcgaattga cttccttgtt
1861 tatgccgagg caccggacat tgagaaagtc aaaaaggatt tccctggaca acctgacatg
1921 tggcgtgacc attttaaagc tgactcgtca cacataaagt tatcactagc cccacagggt
1981 ggttttgata agaacggaaa caccccccac gggaagggca ctgtgaaaac tctcacacta
2041 cactcactca ctgcacgtgt gatgggttta gtgtgtgaga ggaaggatga gttccaactg
2101 cagggtgatg aactacaggt ttataacttt gacacaaaca aggtctctgc gttcaggaaa
2161 ctagcagctg acaacaagta cagctttgtg gagacaatga aagtcggtgc agtcctcaag
2221 aacgtaaaaa ctctggaaga tctgaaatct gctctcaagg gagtcaaatt caaagagtgt
2281 gaaataattt acaagggggc caagtataga gttgcctcgg atggttgtgg cagtgtctca
2341 gtctccaaga tcaaggacgt tgtgtcgcag acagccaatg aagtgcacac agcgctcctg
2401 agattgaggc aagcccgggc caggtattac atcagctgct tccaagacct catatacacc
2461 ctaatacagg ttgctggagc ctcattcgtg gtgcatagga tctcaaagag attctcatgg
2521 gaccgctgga tcaaacccag tgatagccct caggaggaag aacaacccag cagtgaggtg
2581 gccactggga gatgggaaat tgagccaaaa gacatagacc ctgaaggcaa aaagggtaaa
2641 aacaaaaagg gaaggggtag gaaacacacg gctttctcta gtaagggtct tagtgatgaa
2701 gagtatgatg agttcaaaag aatcagagag gagaagaacg gcaaatactc catagaagaa
2761 tacctccagg accgtgacag attttacgag gaagtggcag ttgcaagggc aacggaagag
2821 gacttctgtg aggaagaagt ggcaaagatc agacagagaa tcttcaggcc cacaaagaag
2881 cagaggaagg aggagcgagg cgtcctaggg ctggtcactg gttcagaaat caggaagaga
2941 agaccagatg acttccagcc taaaggtaac ttgtgggctg atgacaccag gagcgtggac
3001 tacaacgaaa agctggagtt tgaagctcct ccaagcgtgt ggtcacgtat cgtgcccctc
3061 ggcactggct ggggtttctg ggtctcctcc aaccttctca taacaacaac acacgtcctg
3121 ccaaaagggt tgaaggagct gttcggggtt gatatcaaac aagtccagat acataagtca
3181 ggtgagttct gcaggtttag gtttccaaga ccaatcagac cagatgtcac aggtctcatc
3241 cttgaagaag gagcccctga aggcacggtg tgttctatcc ttgtcaagag accaactgga
3301 gagatgatac cacttgcagt gaggatgggt acccacgctt ccatgaaaat ccagggtaga
3361 acggttggtg gtcaaatggg catgttgctc acaggagcaa atgccaaaaa catggatttg
3421 ggcacgaacc ctggtgattg tggatgcccg tacattttta agaggggcaa tgacattgtg
3481 gtagctgggg ttcacactgc agctgcacgg ggtggcaaca ctgtcatctg tgccacgcaa
3541 ggagctgacg gagaggccgt ccttgaagga ggggaggaca aagggacgta ctgtggtgcc
3601 ccaatacttg gacttgggaa ggcccccaaa ctcagtacca agacaaagtt ctggcgatcc
3661 tcccctgatg cgcttccccc gggaacgtat gagccagcat acctaggtgg aaaggaccca
3721 agggttgaga agggcccgtc actccagcag gtcatgagag aacaacttaa gcctttcacc
3781 gaacccagag gaaaaccccc aaaacccaac gttcttgatg aggcaaagaa aactgtgatg
3841 aacgttttgg agcagactat aaaccctgcc aaaccctggt catactccca agcatgtgct
3901 tcgcttgaca agacaacttc aagtggtagc ccgcaccacc tgagaaagaa tgatcattgg
3961 aatggtgaat cttttaccgg tcctttggcc gatcaagctt caaaagcaaa cctaatgtat
4021 gaacaggcaa aacacatgag ccccatttac actgcagccc ttaaagatga actggtcaag
4081 actgacaaga tttacaagaa aataaagaag aggctgttgt ggggttctga cctgggtacc
4141 atggtcaggt gtgccagggc ctttggtggg ttgatggata gcatgaaaga gagctgtgtg
4201 atgttaccct gcagagttgg catgaacatg aatgaagatg gaccaatcat tttcgacaaa
4261 catgcaaagt acaaatatca ctatgatgca gattactcca gatgggactc cacacaacaa
4321 aggagcatct tatctgctgc catggaggtt atggtgaagt tctcagctga accggaactg
4381 gcacaagtgg tcgctgaaga cttactcgcc ccaagccaac tcgacgtggg cgattttgtg
4441 gtgtcagtcc aagaaggtct cccctcaggt gttccgtgca cttcccaatg gaactccata
4501 gcacattgga ttatcaccct tagtgcaatg gcagaagttt ctggtctctc cccagatgtg
4561 atccaagctc actcatgctt ctctttctat ggtgatgatg agatagttag cacagacatc
4621 aacttagacc cagcaaagtt aaccttaaaa ctcagggaat atggattggt ccccaccagg
4681 ccagacaaaa ctgaaggccc attagtcata acagaggacc tccatgggtt gaccttccta
4741 cgcagacaca tcacacgaga tcctgctgga tggtttggaa aattagacca ggattcaatc
4801 ttaaggcaac tctattggac tagaggaccc aaccatgaga acccctacga gtgcatggtc
4861 ccacactcac agcgcgcaac ccagttaatg gcgctgttgg gtgaggcatc attgcatggt
4921 ccccagttct acaagaaagt cagcaagatg gttatcaatg aaattaagag tggtggtctg
4981 gaattttacg tgcccagaca ggaggccatg ttcagatgga tgagattctc tgacctcagc
5041 acgtgggagg gcgatcgcaa tctggctccc gacggtgtga atgaggatgg cgtcgagtga
5101 cgcgcccgtt tctggcaccg atggtgcggc aggactcgtc ccagagagtc aacaagaagt
5161 cttgccttta gagcccgtcg cgggagttca gctggctgct cccgtagcag ggcaaagtaa
5221 tataattgac ccctggatta gaatgaattt tgtgcaagcc cctgccggtg agttcactgt
5281 ttcccctcgg aacgcaccgg gtgaggtgct tattgattta gaattaggac cagaattaaa
5341 cccctatctc aatcaccttg caagaatgta caatgggtat gtgggaggaa tggaggtgga
5401 agttgtcctt gccgggaatg cgttcacggc gggtaagatc ttatttgcag ctgtgccccc
5461 cagcttccca acccatggca tttctgcagc acaggcaact atgttaccac atgtgattgt
5521 ggatgtcagg cagctggagc ctgtccggct ccctcttcct gatgtcagga atgtgatgtt
5581 ccatttctgt caagaaaata aggagccgcg catgagaatt gtggcaatat tgtacacccc
5641 tctccgtgcc aacggtgcgg gtgatgatgt tttcactgtc tcatgtcgtg tgctaacaag
5701 gccctcacca gattttgatt ttatcttctt ggtccccccc tctgtagaaa gcaaattgaa
5761 acagtttacc ctcccaaacc tgcagccaaa tgagatgacc aattcaagat tccccactgg
5821 cattacacaa ctctacacca gcccaaatac caatttggtt gtccagttcc aaaatggcag
5881 gtgtctgctt gatggcacgc ttctcggcac cacccctgtc agagctgctg acatctgcag
5941 ctttagagga gtcacctcaa ctgaagttga tgcaactgac agccccagag tagcagggtc
6001 acatagaata atggtgcagc tcaaggagcc agatggagag gagttttcac ccacaggtcc
6061 caaccctgcc cctgttggca ctccagattt tcaagcagcc atatttggca cccttagtca
6121 aagaaacact ggcggggctg ggcagaattc caacagagcc cacttcgcat acttctatac
6181 taggaacccc acatttgcac caggcatagg gacagttgtg ttttcttttg acactactga
6241 ttttcagaat cgccaaccta ctaaattctc tccttctggt gtgtttgatg atgattcttc
6301 tgaacctttt aatcaatttt ctctgccata ttataatgga tcactcggtg cagtggatgc
6361 tgggaaacta gctccgcctg ttgcacccaa ctacccgggt gagcaaattc tttattttag
6421 agggaatatt cctttcaaag gtgggtatgg agagggtgaa attgatagct tgctccccca
6481 ggaatggatc acccactttt atgcagagca ggctcccaca caaggtgacg cagccctgct
6541 gcgttactac aatcctgaca ctggcagagt cctctttgag tgcaaactcc accgcgaggg
6601 attcatcaca atcaattaca cagggtccaa tgctcttgct gtaccagtca atggagtctt
6661 caggtttgag ggctgggtta ataaattcta cacactgacc cccatgggaa atggcaacgg
6721 ccgcaggggt agaagaaggg agttataatg gctggagctt tctttgcagg tcttgcttct
6781 gatgttctcg gcagcggttt gtcttcactt atcggtgccg gtgccaatgc cataaatcaa
6841 aaagttgagt atgattacaa taggcacttg cagtcagctt ctttccaaca tgataaggat
6901 atgctcaact cacaggtgga agccacaaag cacttacaaa gggagatgat ggccatcaag
6961 gaaggcatgc tgctcaaggg tgggttctcc cccactgatg cagcaagagg ggctgtcaac
7021 gcccctatga cacaaatctt ggattggaat ggcaccagat actgggcccc gggtgcaatg
7081 aaaaccacgg cttactcagg ccgttttgtt agtcaatcta ctcataggcc tatccccaat
7141 gttgtgcaca agagtgatgg actcacacac caaactgggt caaccacagg gtccatttct
7201 tctctctcca catcatccac ccgtgttcca tcatccacat cctcatctag tagtgcttct
7261 aggacaaggg actgggtgtc tgaacaacaa agactcagcc ctttcatgag aggctctctc
7321 cacacagcat atgtgactcc tccctcaagc tctgcctctt cagtaagctc tgtttctaca
7381 gtcccatatc atgttttaga ttcatggacc ccttctttca atactaaaca tttacctttg
7441 tttgctcatg ttaggaaaag gggacagtct caagtttaat ctaccactca tggtttgatt
7501 gatttgtttt gtaattagtg aaatgttgat tctttctaat tcggc
//