Typing tool
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Typing tool
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Complete norovirus genomes
| MN227774 | GIX.1 | |
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| GII.P15 |
ORF1: 1..5097
ORF2: 5078..6745
ORF3: 6745..7476
LOCUS MN227774 7484 bp RNA linear VRL 03-AUG-2019
DEFINITION Norovirus GIX strain Sevier0098 isolate
Hu/US/2017/GII.P15-GIX.1/Sevier0098, complete genome.
ACCESSION MN227774
VERSION MN227774.1
KEYWORDS .
SOURCE Norovirus GIX
ORGANISM Norovirus GIX
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7484)
AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7484
/organism="Norovirus GIX"
/mol_type="genomic RNA"
/strain="Sevier0098"
/isolate="Hu/US/2017/GII.P15-GIX.1/Sevier0098"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:2594528"
/country="USA"
/collection_date="07-Jul-2018"
/note="genotype: GIX.1-GII.P15"
gene 1..5097
/gene="ORF1"
CDS 1..5097
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QDR48011.1"
/translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK
ILGAVPKAPKQHGSIQKSPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST
VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP
AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDSWLSRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ
GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR
RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL
ARQLAKSIASSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP
DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL
TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN
VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTAL
LRLRQARARFYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS
SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK
YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT
GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN
LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC
GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL
GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR
GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN
GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG
TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS
TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS
QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTSKLRE
YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
mat_peptide 1..1002
/gene="ORF1"
/product="p48"
mat_peptide 1003..2100
/gene="ORF1"
/product="NTPase"
mat_peptide 2101..2622
/gene="ORF1"
/product="p22"
mat_peptide 2623..3021
/gene="ORF1"
/product="VPg"
mat_peptide 3022..3564
/gene="ORF1"
/product="Pro"
mat_peptide 3565..5094
/gene="ORF1"
/product="RdRp"
gene 5078..6745
/gene="ORF2"
CDS 5078..6745
/gene="ORF2"
/codon_start=1
/product="VP1"
/protein_id="QDR48012.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCMLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFFPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6745..7476
/gene="ORF3"
CDS 6745..7476
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="QDR48013.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV
PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD
SWTPSFNTKHLPLFAHVRKRGQSQV"
ORIGIN
1 atgaagatgg cgtcgaatga cgtcgttact gcccttggca gccagaaagc taccaatgac
61 agctatagca cacctccccc caataaggag gaggctagtg tgcttgccaa cgttaaagtt
121 ggcttcaaaa agatcctcgg ggccgtccct aaggctccga aacagcatgg cagcatacaa
181 aaatcgccga tcgtcgagat cgatggtgtg gccatgcgtg taccttctcc ccccccaaac
241 ggtgaggacg cagtccactt tgtgaaggaa acggagacca tcaagggact gccagatttg
301 tccaccgtgg agaacgaatc tgaacactcc ccgtacacag tccccccgtt gagtgagaga
361 gagcacaggc cagcaacaga accattgccc ggcactatac ttgagatgtg ggatggtgag
421 ttctatcact actccatata cgtggacaat ggcaaggctc ttggtgttca caaaccacca
481 gcagcaatta gcctagcaac gatagattta acacctatat cgttgtactg gagaccggtt
541 tacacaccgc cgtaccttgt ccacccagag acgctcaagg gactggctgg cgaaaagttt
601 ccctacacgg ccttcagcaa caactgctac aacttctgtt gctgggtttt ggacctcaat
661 gattcgtggt tgagccggag atccataact agaacaactg gattcttcaa accctaccaa
721 tcctggaata ggaagcccct tccaactgtg gatgatggca agatcaagaa ggtcgcgaat
781 gcagttctgt gtgccctggg ttcacttttc tccaagccca ttaaggatct ccttggtaaa
841 ttaaaacccc tcaatctcct aaacttgctt gcatcatgtg actggacctt tgctggcgtg
901 gtggagacag tcattcttgc agcagagctc ttcaatgtct tttggacccc acctgatgtc
961 tccaatttca ttgcctctat aattggcgac tttgagatgc aaggaccaga ggatcttgct
1021 gtggagcttg tccctgttat catgggaggc attggtatgg tattagggtt tacagctgag
1081 aagatagggc gcatgttatc atctgcagca tccaccctca gggcttgtaa ggaccttggc
1141 aattacgcct tagacatcct gaaactagtc atgaagtggt tcttccctaa aaaggaggaa
1201 aaggccgaga tggaaaccct gagggccatt gaggacgctg tccttgacat ggaggcaatt
1261 ggaaacaacc acctcacaac actgctcaaa gacaaagata gcttgagcgc ctacatgaag
1321 accttagaca tggaggagga gaaggccagg aggctctcca ctaaatcatc atcacccgac
1381 attgttggca ccatcaacgc gatcctcgca cgcattgctg ccgcaaggtc actcctacac
1441 aaagccaaag aggaaatgtt cagtcgagcg aggcctgttg tcgtcatggt gtctggaaga
1501 cccggcatcg ggaagacata tctggctaga cagcttgcca aatcgattgc aagcagcatg
1561 agtggtgatc agagagtggg actcgtcccc cgcaatgggg ttgaccactg ggatgcctat
1621 aggggtgaaa gagttgtcct atgggatgac tacggcatgg ggaatacaat caaagatgcc
1681 ctgaccctac aagagttggc tgacacctgc ccagtcaccc tcaactgtga caggatcgag
1741 aacaagggga agatgtttga cagtgatgtc atcataataa caaccaatct tgtcaacccc
1801 gctcccctcg attatgttaa ttttgaggct tgctgtaggc gaattgactt ccttgtttat
1861 gccgaggcac cggacattga gaaagtcaaa aaggatttcc ctggacaacc tgacatgtgg
1921 cgtgatcatt ttaaagctga ctcgtcacac ataaagttat cactagcccc acagggtggt
1981 tttgacaaga acggaaacac cccccacggg aagggcacca tgaaaactct cacgctacac
2041 tcactcactg cacgtgtgat gggtttagtg tgtgagagga aggatgagtt ccaactgcag
2101 ggtgatgaac tacaggttta taactttgac acaaacaagg tctctgcatt tagaaaacta
2161 gcagctgaca acaagtacag ctttgtggag acaatgaaag tcggtgcagt cctcaagaac
2221 gtaaaaaccc tggaagatct gaaatctgcc ctcaagggag ttaaatttaa agagtgtgaa
2281 ataatttaca agggggccaa gtatagagtt gcctcagatg gttgtggcag tgtctcagtt
2341 tccaagatca aggatgttgt gtcgcagaca gccaatgaag tgcacacagc gctcctaaga
2401 ttgaggcaag cccgggccag gttttacatc agctgcttcc aagacctcat atacacccta
2461 atacaggttg ctggagcctc atttgtggtg cataggatct caaagagatt ctcatgggac
2521 cgctggatca aacccagtga cagccctcag gaggaagaac aacccagcag tgaggtggcc
2581 acagggaggt gggaaattga gccaaaagac acagaccctg aaggcaaaaa gggtaaaaac
2641 aagaagggaa ggggaaggaa acacacggct ttctctagca agggtcttag tgatgaagag
2701 tatgatgagt tcaaaagaat cagagaggag aagaacggca aatactccat agaagaatac
2761 ctccaggacc gtgacagatt ttacgaggaa gtggcagttg caagggcaac ggaagaggac
2821 ttctgtgagg aagaagtggc aaagatcaga cagagaatct tcaggcccac aaagaagcag
2881 aggaaggagg aacggggcgt cctagggctg gtcactggtt cagaaatcag aaagagaaga
2941 ccagatgact tccagcctaa aggtaacttg tgggctgatg acaccaggag cgtggactac
3001 aacgaaaagc tggagtttga ggcccctccg agcgtgtggt cacgtatcgt acccctcggc
3061 actggctggg gtttctgggt ctcctctaac cttctcataa caacaacaca cgtcctgcca
3121 aaaggattga aggagctgtt cggggttgat atcaaacaag tccagataca taagtcaggt
3181 gagttctgca ggttcaggtt tccaagacca atcagaccag atgttacagg cctcatcctt
3241 gaagaagggg cccctgaagg cacggtgtgt tccatccttg tcaaaagacc gacaggagag
3301 atgataccac ttgcagtgag gatgggcaca cacgcttcca tgaaaatcca gggtagaacg
3361 gttggtggtc aaatgggcat gttgctcaca ggagcaaatg ccaaaaacat ggacttgggc
3421 acgaaccctg gtgattgtgg atgcccgtat atctttaaga ggggcaatga cattgtggtg
3481 gctggggtcc acactgcagc tgcacggggt ggcaacactg tgatctgtgc cacgcaagga
3541 gctgacggag aggccgtcct tgaaggagga gaggacaaag ggacatactg tggtgcccca
3601 atacttggac tcgggaaggc ccccaaactc agcaccaaaa caaagttctg gcgatcctcc
3661 cctgatgcgc ttcccccggg aacgtatgag ccagcatacc taggtggaaa ggacccaagg
3721 gttgaaaagg gcccgtcact ccagcaggtc atgagagaac aacttaaacc tttcaccgaa
3781 cccagaggaa aacccccaaa acccaacgtt cttgatgagg caaagaaaac tgtgatgaac
3841 gtgttggagc agactataaa ccctgccaaa ccctggtcat actcccaagc atgtgcttcg
3901 cttgacaaga caacctcaag tggtagcccg caccacctga gaaagaatga tcattggaat
3961 ggtgaatctt ttaccggtcc tttggccgat caagcttcaa aagcaaacct aatgtatgaa
4021 caggcaaaac acatgagccc cgtttacact gcggccctca aagatgaact ggtcaagact
4081 gataagattt acaagaaaat aaagaagagg ctgctgtggg gttctgacct gggtaccatg
4141 gtcaggtgtg ctagggcttt tggtgggctg atggatagca tgaaagagag ttgtgtgatg
4201 ttgccctgca gagttggcat gaacatgaat gaagatggac caatcatttt tgacaaacat
4261 gcaaagtaca aatatcacta tgatgcagat tactccagat gggattccac acaacaaagg
4321 agcatcttat ctgctgccat ggaggttatg gtgaagttct cagctgaacc ggaactggca
4381 caagtggtcg ctgaagactt gctcgcccca agccaactcg acgtgggcga ctttgtggtg
4441 tcagtccaag aaggtctccc ctcaggtgtt ccgtgcactt cccaatggaa ctccatagca
4501 cattggatca tcacccttag tgcaatggca gaagtttctg gtctctcccc agatgtgatc
4561 caagctcatt catgcttctc tttctatggt gatgatgaga tagttagcac agacatcaac
4621 ttggacccgg caaagctaac ctcaaaactc agggaatatg gattggtccc caccagacca
4681 gacaaaactg aaggcccatt ggtcatcaca gaggacctcc atgggttgac cttcctacgc
4741 aggcacatca cacgagatcc tgctggatgg tttggaaaat tagaccagga ttcaatctta
4801 aggcaactct attggactag aggacccaac catgagaacc cctacgagtg catggtccca
4861 cactcacagc gcgcaaccca gttaatggcg ctgttgggtg aggcatcatt gcacggtccc
4921 cagttctaca agaaagtcag caagatggtt atcaatgaaa ttaagagtgg tggtctggaa
4981 ttttacgtgc ccagacagga ggccatgttc agatggatga gattctctga cctcagcacg
5041 tgggagggcg atcgcaatct ggctcccgac ggtgtgaatg aggatggcgt cgagtgacgc
5101 gcccgtttct ggcaccgatg gtgcggcagg actcgtccca gagagtcaac aagaagtctt
5161 gcctttagag cccgttgcgg gagttcagct ggctgctccc gtagcagggc aaagtaatat
5221 aattgacccc tggattagaa tgaattttgt gcaagccccg gccggtgagt tcactgtttc
5281 cccccgtaac gcaccgggtg aagtgcttat tgatttagaa ttaggaccag aattaaatcc
5341 ctatctcaat caccttgcaa gaatgtacaa tgggtatgtg ggaggaatgg aggtggaagt
5401 tgtccttgcc gggaatgcgt tcacggcggg taagatctta tttgcagctg tgccccccag
5461 cttcccgacc catggcattt ctgcagcaca ggcaaccatg ttaccacatg tgattgtgga
5521 tgtcaggcag ctggagcctg ttcggctccc tcttcctgat gtcaggaatg tgatgttcca
5581 tttctgtcaa gaaaataagg agccgcgcat gagaattgtg gcaatattgt acacccctct
5641 ccgtgccaac ggtgcgggtg atgatgtttt cactgtctca tgtcgtgtgc taacaaggcc
5701 ctcaccagat tttgacttta ttttcttggt ccccccctct gtagagagta agttgaaaca
5761 gtttaccctt ccaaacctgc agccaaatga aatgaccaat tcaagattcc ccactggcat
5821 cacacaactc tacaccagcc caaataccaa tctggttgtc cagttccaaa atggcaggtg
5881 tatgcttgat ggcacactcc tcggcaccac ccccgtcaga gctgctgaca tctgcagttt
5941 tagaggagtt acctcaactg aagttgatgc aactgacagt cccagagtgg cagggtcgca
6001 tagaattatg gtgcagctca aggagccaga tggagaggag ttttcaccca caggtcccaa
6061 ccctgcccct gttggtactc cagacttcca agcagccata tttggcaccc ttagtcaaag
6121 aaacactggc ggggctgggc agaactccaa cagagcccac ttcgcatact tctatactag
6181 gaaccccaca tttgcaccag gcatagggac agttgtgttt tcttttgata ctactgattt
6241 tcagaatcgc cagcctacta aattcttccc ttctggtgtg tttgatgatg attcttctga
6301 accttttaat caattttctc taccatatta taatggatca ctcggtgcag tggatgctgg
6361 gaaactagct ccgcctgtag cacccaacta cccaggtgag cagattcttt attttagagg
6421 gaatattccc ttcaaaggtg ggtatggaga gggtgaaatt gatagcttgc ttcctcagga
6481 gtggatcacc cacttttatg cagagcaggc tcctacacaa ggtgacgcag ccctgctgcg
6541 ttactacaac cctgacactg gcagagtcct ctttgagtgt aaactccacc gcgagggatt
6601 catcacaatc aattacacag ggtccaatgc tcttgctgta ccagtcaatg gagtcttcag
6661 gtttgagggc tgggttaaca aattctacac actgaccccc atgggaaatg gcaatggccg
6721 caggggtaga agaagggagt tataatggct ggagctttct ttgcaggtct tgcttctgat
6781 gttctcggca gtggtttgtc ttcacttatc ggtgccggtg ccaatgccat aaatcaaaag
6841 gttgaatatg attacaatag gcacttgcag tcagcttctt tccaacatga taaggatatg
6901 ctcaactcac aggtggaagc cacaaagcac ttacaaaggg agatgatggc catcaaggaa
6961 ggcatgctgc tcaagggtgg gttctccccc actgatgcag caagaggagc tgtcaacgcc
7021 cctatgacac aaattttgga ttggaatggc accagatact gggccccggg tgcaatgaaa
7081 accacggctt actcaggccg ttttgttagc caatccactc ataggcctat tcccaatgtt
7141 gttcacaaga gtgatggacc catacaccaa actgggtcaa ccacagggtc catttcttct
7201 ctctccacat catccactcg tgttccatca tctacatcct catctagtag tgcttctaga
7261 acaagggatt gggtgtctga acagcaaaga ctcagccctt tcatgagagg ttctcttcac
7321 actgcatatg taactcctcc ctcaagctcc gcctcttcag taagttctgt ttctacagtc
7381 ccacattatg ttttagattc atggaccccc tcttttaaca ctaaacacct acctctgttt
7441 gctcatgtta gaaaaagggg acaatctcaa gtttaatcta ccac
//