Typing tool
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Typing tool
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Complete norovirus genomes
| MN227773 | GIX.1 | |
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| GII.P15 |
ORF1: 2..5098
ORF2: 5079..6746
ORF3: 6746..7477
LOCUS MN227773 7547 bp RNA linear VRL 03-AUG-2019
DEFINITION Norovirus GIX strain Barry0458 isolate
Hu/US/2017/GII.P15-GIX.1/Barry0458, complete genome.
ACCESSION MN227773
VERSION MN227773.1
KEYWORDS .
SOURCE Norovirus GIX
ORGANISM Norovirus GIX
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7547)
AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7547
/organism="Norovirus GIX"
/mol_type="genomic RNA"
/strain="Barry0458"
/isolate="Hu/US/2017/GII.P15-GIX.1/Barry0458"
/isolation_source="vomitus"
/host="Homo sapiens"
/db_xref="taxon:2594528"
/country="USA"
/collection_date="15-Dec-2017"
/note="genotype: GIX.1-GII.P15"
gene 2..5098
/gene="ORF1"
CDS 2..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QDR48008.1"
/translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK
ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST
VENESEHSPYTVPPLSEREHRSATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP
AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNIFWTPPDVSNFIASIIGDFEMQ
GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR
RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL
ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP
DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL
TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN
VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL
LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS
SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK
YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT
GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPIGTGWGFWVSSN
LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC
GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL
GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR
GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN
GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG
TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS
TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS
QWNSIAHWITTLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE
YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
mat_peptide 2..1003
/gene="ORF1"
/product="p48"
mat_peptide 1004..2101
/gene="ORF1"
/product="NTPase"
mat_peptide 2102..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6746
/gene="ORF2"
CDS 5079..6746
/gene="ORF2"
/codon_start=1
/product="VP1"
/protein_id="QDR48009.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVYDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6746..7477
/gene="ORF3"
CDS 6746..7477
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="QDR48010.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSTHKPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTHV
PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD
SWTPSFNTKHLPLFAHVRKRGQSQV"
ORIGIN
1 aatgaagatg gcgtcgaatg acgtcgttac tgcccttggc agccaaaaag ctaccaatga
61 cagctatagc acacctcccc ctaacaagga ggaggctagt gtgcttgcca acgttaaagt
121 tggctttaaa aagatcctcg gggccgtccc taaggctccg aaacagcatg gcagcataca
181 aaaaccgccg atcgtcgaga tcgatggcgt ggccatgcgt gtaccctctc cccccccaaa
241 cggtgaggac gcagtccact tcgtgaagga aacggagacc atcaagggac tgccagatct
301 gtccaccgtg gagaacgagt ctgaacactc tccgtacaca gtccccccgt tgagtgagag
361 ggagcacagg tcagcaacag agccattgcc cggcactata cttgagatgt gggatggtga
421 gttctaccac tactccatat acgtggacaa tggcaaggcc cttggagttc acaaaccacc
481 agcagcaatt agcctagcaa cgatagattt aacacctata tcgttgtact ggaggccggt
541 ttacacaccg ccgtaccttg tccacccaga gacgctcaag ggactggctg gcgaaaagtt
601 cccctacacg gccttcagca acaactgcta caacttctgt tgctgggttc tggacctcaa
661 tgactcgtgg ttgaaccgga gatccataac tagaacaact ggcttcttca aaccctacca
721 atcctggaac aggaagcccc tcccaactgt ggatgatggc aagatcaaga aggtcgcgaa
781 tgcagttctg tgtgccctag gatcactttt ctccaagccc attaaggacc tccttggcaa
841 attaaaaccc ctcaatctcc tgaacttgct tgcatcatgt gactggacct ttgctggcgt
901 ggtggaaaca gtcattcttg ctgcagagct cttcaatatc ttttggactc cacctgatgt
961 ctccaacttc attgcttcca taattggcga cttcgagatg caaggaccag aggatcttgc
1021 tgtggagctt gtccctgtta tcatgggagg cattggtatg gtgttagggt ttacagctga
1081 gaagataggg cgtatgttat catctgcagc atccaccctc agggcttgta aggaccttgg
1141 caattacgcc ttagacatcc tgaaactagt catgaagtgg tttttcccta aaaaggagga
1201 aaaggccgag atggaaaccc tgagggccat tgaggacgct gtccttgaca tggaggcaat
1261 tggaaacaac cacctcacaa cgctgctcaa agacaaagat agcttgagcg cctacatgaa
1321 gaccttggac atggaggagg agaaggccag gaggctctcc actaaatcat catcacccga
1381 cattgttggc accatcaacg cgatcctcgc acgcattgct gccgcaaggt cactcctaca
1441 caaagccaaa gaggaaatgt tcagtcgagc gaggcctgtt gtcgttatgg tgtctggaag
1501 acccggcatc gggaagacat atctggctag acagcttgcc aaatcgattg cgaacagcat
1561 gagtggtgat cagagagtgg gactcgtccc ccgcaatggg gttgaccact gggatgccta
1621 taggggtgaa agagttgtcc tatgggatga ctacggcatg ggaaacacaa tcaaagatgc
1681 cctgaccctg caagagttgg ctgacacctg cccagttacc ctcaactgtg acaggatcga
1741 aaacaagggg aagatgtttg acagtgatgt catcataata acaaccaatc ttgtcaaccc
1801 cgctcccctc gattatgtta attttgaggc ttgctgtagg cgaattgact tccttgttta
1861 tgccgaggca ccggacattg agaaagtcaa aaaggatttc cctggacaac ctgacatgtg
1921 gcgtgaccat tttaaagctg actcgtcaca cataaagtta tcactagccc cacagggtgg
1981 ctttgacaag aacggaaaca cccctcacgg gaagggcacc atgaaaactc tcacgctaca
2041 ctcactcact gcacgtgtga tgggtttagt gtgtgagagg aaggatgagt tccaactgca
2101 gggtgatgaa ctacaggttt ataactttga cacaaacaag gtctctgcat ttagaaaact
2161 agcagctgac aacaagtaca gctttgtgga gacaatgaaa gtcggtgcag tcctcaagaa
2221 tgtaaaaacc ctggaagatc tgaaatctgc cctcaaggga gttaaattca aagagtgtga
2281 aataatttac aagggggcca agtatagagt cgcctcggat ggttgtggca gtgtctcagt
2341 ttccaagatc aaggatgttg tgtcgcagac atccaacgaa gtgcacacag cgctcctgag
2401 attgaggcaa gcccgggcca ggtattacat cagctgcttc caagacctca tatacaccct
2461 aatacaggtt gctggagcct catttgtggt acataggatc tcaaagagat tctcatggga
2521 ccgctggatc aaacccagtg acagccctca ggaggaagaa caacccagca gtgaggtggc
2581 cacagggaga tgggaaattg agccaaaaga cacagatcct gaaggcaaaa agggtaaaaa
2641 caagaaggga aggggaagga aacacacggc tttctctagt aagggtctta gtgatgaaga
2701 gtatgatgag ttcaaaagaa tcagagagga gaagaacggc aaatactcca tagaagaata
2761 cctccaggac cgtgacagat tttacgagga agtggcagtt gcaagggcaa cggaagagga
2821 cttctgtgag gaagaagtgg caaagatcag acagagaatc ttcaggccca caaagaagca
2881 gaggaaggaa gagcgtggcg tcctagggct ggtcactggt tcagaaatca ggaagagaag
2941 accagatgac ttccagccta aaggtaactt gtgggctgat gacaccagga gcgtggacta
3001 caacgaaaag ctggagtttg aggcccctcc gagcgtgtgg tcacgcatcg tacccatcgg
3061 cactggctgg ggtttctggg tctcctccaa ccttctcata acaacaacac atgtcctgcc
3121 aaaaggattg aaggagctgt tcggggttga tatcaaacaa gtccagatac acaagtcagg
3181 tgagttctgc aggttcaggt ttccaagacc aatcagacca gatgtcacag gcctcatcct
3241 tgaagaaggg gcccctgaag gtacggtgtg ttctatcctt gtcaaaagac cgactggaga
3301 gatgatacca cttgcagtga ggatgggcac ccacgcttcc atgaaaatcc agggtagaac
3361 ggttggtggt caaatgggca tgttgctcac aggagcaaac gccaaaaaca tggatttggg
3421 cacgaaccct ggtgattgtg gatgcccgta catttttaag aggggcaatg acattgtggt
3481 agctggggtc cacactgcag ctgcacgggg tggcaacact gtgatctgtg ccacgcaagg
3541 agctgacgga gaggccgtcc ttgaaggagg agaggacaaa gggacgtact gtggtgcccc
3601 aatacttgga ctcgggaagg ctcccaaact cagtaccaag acaaagttct ggcgatcctc
3661 ccctgatgcg cttcccccgg gaacgtatga gccagcatac ctaggtggaa aggacccaag
3721 ggttgagaag ggcccgtcac tccagcaggt catgagagaa caacttaaac ctttcaccga
3781 acccagagga aaacccccaa aacccaacgt tcttgatgag gcaaagaaaa ctgtgatgaa
3841 cgtgttggag cagactataa accctgccaa accctggtca tactcccaag catgtgcttc
3901 gcttgacaag acaacttcaa gtggtagccc gcaccacctg agaaagaatg atcattggaa
3961 tggtgaatct tttaccggtc ctttggccga tcaagcttca aaagcaaacc taatgtatga
4021 acaggcaaaa cacatgagcc ccgtttacac tgcggccctt aaagatgaac tggtcaagac
4081 tgataagatc tacaagaaaa taaagaagag gctgctgtgg ggctctgacc tgggtaccat
4141 ggtcaggtgt gctagggctt ttggtgggtt gatggatagc atgaaagaga gttgtgtgat
4201 gttgccctgc agagttggca tgaacatgaa tgaagatgga ccaatcattt ttgacaaaca
4261 tgcaaagtac aaatatcact atgatgcaga ttactccaga tgggattcca cacaacaaag
4321 gagcatctta tctgctgcca tggaggttat ggtgaagttc tcagctgaac cggaactggc
4381 acaagtggtc gctgaagact tgctcgcccc gagccaactc gacgtgggcg actttgtggt
4441 gtcagtccaa gaaggtctcc cctcaggtgt tccgtgcact tcccaatgga actccatagc
4501 acattggatc accaccctta gtgcaatggc agaagtttct ggtctctccc cagatgtgat
4561 ccaagctcac tcatgcttct ctttctatgg tgatgatgag atagttagca cagacatcaa
4621 cttggaccca gcaaagctaa ccttaaaact cagggaatat ggattggtcc ccaccagacc
4681 agacaaaact gaaggcccat tagtcatcac agaggatctc catggattga cctttctacg
4741 cagacacatc acacgagatc ctgctggatg gtttggaaaa ttggaccagg attcaatctt
4801 gaggcaactc tattggacta gaggacccaa ccatgaaaac ccctacgagt gcatggtccc
4861 acactcacag cgcgcaactc agttaatggc gctgttgggt gaggcatcat tgcacggtcc
4921 ccagttctac aagaaagtca gcaagatggt tatcaatgag attaagagtg gtggtctgga
4981 attttacgtg cccagacagg aggccatgtt cagatggatg agattctctg acctcagcac
5041 gtgggagggc gatcgcaatc tggctcccga cggtgtgaat gaggatggcg tcgagtgacg
5101 cgcccgtttc tggcaccgat ggtgcggcag gactcgtccc agagagtcaa caagaagtct
5161 tgcctttaga gcccgtcgcg ggagtacagc tggctgctcc cgtagcaggg caaagtaata
5221 taattgaccc ctggattaga atgaattttg tgcaagcccc ggccggtgag ttcactgttt
5281 cccctcggaa cgcaccgggt gaggtgctta ttgatttaga attaggacca gaattaaatc
5341 cctatctcaa tcaccttgcg agaatgtaca atgggtatgt gggaggaatg gaggtggaag
5401 ttgtccttgc cgggaatgcg ttcacggcgg gtaagatctt attcgcagct gtgcccccca
5461 gcttcccaac ccatggcatt tctgcagcac aggcaactat gttaccacat gtgattgtgg
5521 atgtcaggca gctggagcct gtccggctcc ctcttcctga tgtcaggaat gtgatgttcc
5581 atttctgtca agaaaataag gagccgcgca tgagaattgt ggcaatattg tacacccctc
5641 tccgtgccaa cggtgcgggt gatgatgtct tcactgtctc atgtcgtgtg ctaacaaggc
5701 cctcaccaga ttttgacttt attttcttgg tccccccctc tgtagagagt aagttgaaac
5761 agtttaccct tccaaacctg cagccaaatg aaatgactaa ttcaagattc cccactggta
5821 tcacacaact ctacaccagt ccaaatacca atttggttgt ccagttccaa aatggcaggt
5881 gtctgcttga tggtacactc ctcggcacca cccctgtcag agctgctgac atctgcagtt
5941 tcagaggagt cacctcaact gaagttgatg caactgacag ccccagagtg gcaggatccc
6001 atagaattat ggtgcagctc aaggagccag atggagagga gttttcaccc acaggtccta
6061 accctgcccc tgttggcact ccagactttc aagcagccat atttggcacc cttagtcaaa
6121 gaaacactgg cggggctggg cagaactcca acagagccca cttcgcatac ttctacacta
6181 gaaaccccac atttgcacca ggtataggga cagttgtgtt ttcttttgat actactgatt
6241 ttcaaaatcg ccaacctact aaattctctc cttctggtgt gtatgatgat gattcttctg
6301 aaccttttaa tcaattttct ctaccatatt ataatggatc actcggtgca gtggatgctg
6361 gaaaactagc tcctcctgta gcacccaact acccaggtga gcagattctc tattttagag
6421 ggaatattcc cttcaaaggt gggtatgggg agggtgaaat tgatagcttg cttccccagg
6481 agtggatcac ccacttttat gcagagcagg ctcctacaca aggtgacgca gccctgctgc
6541 gttactacaa ccctgacact ggcagagtcc tctttgagtg caaactccac cgcgagggat
6601 tcatcacaat caattacaca gggtccaatg ctcttgctgt accagtcaat ggagtcttca
6661 ggtttgaggg ctgggttaac aaattctaca cactgacccc catgggaaat ggcaacggcc
6721 gcaggggtag aagaagggag ttataatggc tggagctttc tttgcaggtc ttgcttctga
6781 tgttctcggc agcggtttgt cttcacttat cggtgccggt gccaatgcca taaatcaaaa
6841 ggttgaatat gattacaata gacacttgca gtctgcttct ttccaacatg ataaggatat
6901 gctcaactca caggtggaag ccacaaagca cttacaaaga gagatgatgg ccatcaagga
6961 aggcatgctg ctcaagggtg ggttctcccc cactgatgca gcaagaggag ctgtcaacgc
7021 ccctatgaca caaattttgg attggaatgg caccagatac tgggccccgg gtgcaatgaa
7081 aaccacggct tactcaggcc gttttgttag ccaatccact cacaagccta ttcccaatgt
7141 tgttcacaag agtgatggac ccatacacca aactgggtca accacagggt ccatttcttc
7201 tctctccaca tcatccaccc atgttccatc atccacatcc tcatctagta gtgcttctag
7261 aacaagggac tgggtgtctg aacagcaaag actcagccct ttcatgagag gctctcttca
7321 cactgcatat gtgactcctc cttcaagctc tgcctcctca gtaagctctg tttctacagt
7381 cccacactat gttttagatt catggactcc ttcttttaac actaaacatc tacctttgtt
7441 tgctcatgtt aggaaaaggg gacaatctca agtttaatct accactcatg gtttgattga
7501 tttgttttgt aattagtgaa atgttgattc tttctaattc ggcatga
//