Typing tool
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Typing tool
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Complete norovirus genomes
| MN227772 | GIX.1 | |
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| GII.P15 |
ORF1: 5..5101
ORF2: 5082..6749
ORF3: 6749..7480
LOCUS MN227772 7550 bp RNA linear VRL 03-AUG-2019
DEFINITION Norovirus GIX strain Barry0457 isolate
Hu/US/2017/GII.P15-GIX.1/Barry0457, complete genome.
ACCESSION MN227772
VERSION MN227772.1
KEYWORDS .
SOURCE Norovirus GIX
ORGANISM Norovirus GIX
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7550)
AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7550
/organism="Norovirus GIX"
/mol_type="genomic RNA"
/strain="Barry0457"
/isolate="Hu/US/2017/GII.P15-GIX.1/Barry0457"
/isolation_source="vomitus"
/host="Homo sapiens"
/db_xref="taxon:2594528"
/country="USA"
/collection_date="14-Dec-2017"
/note="genotype: GIX.1-GII.P15"
gene 5..5101
/gene="ORF1"
CDS 5..5101
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QDR48005.1"
/translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK
ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST
VENESEHSPYTVPPLSEREHRSATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP
AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNIFWTPPDVSNFIASIIGDFEMQ
GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR
RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL
ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP
DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL
TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN
VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL
LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS
SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK
YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT
GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPIGTGWGFWVSSN
LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC
GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL
GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR
GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN
GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG
TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS
TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS
QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE
YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RdRp"
gene 5082..6749
/gene="ORF2"
CDS 5082..6749
/gene="ORF2"
/codon_start=1
/product="VP1"
/protein_id="QDR48006.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVYDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6749..7480
/gene="ORF3"
CDS 6749..7480
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="QDR48007.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSTHKPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTHV
PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD
SWTPSFNTKHLPLFAHVRKRGQSQV"
ORIGIN
1 gtgaatgaag atggcgtcga atgacgtcgt tactgccctt ggcagccaaa aagctaccaa
61 tgacagctat agcacacctc cccctaacaa ggaggaggct agtgtgcttg ccaacgttaa
121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat
181 acaaaaaccg ccgatcgtcg agatcgatgg cgtggccatg cgtgtaccct ctcccccccc
241 aaacggtgag gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga
301 tctgtccacc gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga
361 gagggagcac aggtcagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg
421 tgagttctac cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc
481 accagcagca attagcctag caacgataga tttaacacct atatcgttgt actggaggcc
541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa
601 gttcccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct
661 caatgactcg tggttgaacc ggagatccat aactagaaca actggcttct tcaaacccta
721 ccaatcctgg aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc
781 gaatgcagtt ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg
841 caaattaaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg
901 cgtggtggaa acagtcattc ttgctgcaga gctcttcaat atcttttgga ctccacctga
961 tgtctccaac ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct
1021 tgctgtggag cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc
1081 tgagaagata gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct
1141 tggcaattac gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga
1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctgtccttg acatggaggc
1261 aattggaaac aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctacat
1321 gaagaccttg gacatggagg aggagaaggc caggaggctc tccactaaat catcatcacc
1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct
1441 acacaaagcc aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg
1501 aagacccggc atcgggaaga catatctggc tagacagctt gccaaatcga ttgcgaacag
1561 catgagtggt gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc
1621 ctataggggt gaaagagttg tcctatggga tgactacggc atgggaaaca caatcaaaga
1681 tgccctgacc ctgcaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat
1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa
1801 ccccgctccc ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt
1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat
1921 gtggcgtgac cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg
1981 tggctttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct
2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact
2101 gcagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa
2161 actagcagct gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa
2221 gaatgtaaaa accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg
2281 tgaaataatt tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc
2341 agtttccaag atcaaggatg ttgtgtcgca gacatccaac gaagtgcaca cagcgctcct
2401 gagattgagg caagcccggg ccaggtatta catcagctgc ttccaagacc tcatatacac
2461 cctaatacag gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg
2521 ggaccgctgg atcaaaccca gtgacagccc tcaggaggaa gaacaaccca gcagtgaggt
2581 ggccacaggg agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa
2641 aaacaagaag ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga
2701 agagtatgat gagttcaaaa gaatcagaga ggagaagaac ggcaaatact ccatagaaga
2761 atacctccag gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga
2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa
2881 gcagaggaag gaagagcgtg gcgtcctagg gctggtcact ggttcagaaa tcaggaagag
2941 aagaccagat gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga
3001 ctacaacgaa aagctggagt ttgaggcccc tccgagcgtg tggtcacgca tcgtacccat
3061 cggcactggc tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct
3121 gccaaaagga ttgaaggagc tgttcggggt tgatatcaaa caagtccaga tacacaagtc
3181 aggtgagttc tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat
3241 ccttgaagaa ggggcccctg aaggtacggt gtgttctatc cttgtcaaaa gaccgactgg
3301 agagatgata ccacttgcag tgaggatggg cacccacgct tccatgaaaa tccagggtag
3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aacgccaaaa acatggattt
3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt
3481 ggtagctggg gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca
3541 aggagctgac ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc
3601 cccaatactt ggactcggga aggctcccaa actcagtacc aagacaaagt tctggcgatc
3661 ctcccctgat gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaggaccc
3721 aagggttgag aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac
3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat
3841 gaacgtgttg gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc
3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg
3961 gaatggtgaa tcttttaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta
4021 tgaacaggca aaacacatga gccccgttta cactgcggcc cttaaagatg aactggtcaa
4081 gactgataag atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac
4141 catggtcagg tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt
4201 gatgttgccc tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa
4261 acatgcaaag tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca
4321 aaggagcatc ttatctgctg ccatggaggt tatggtgaag ttctcagctg aaccggaact
4381 ggcacaagtg gtcgctgaag acttgctcgc cccgagccaa ctcgacgtgg gcgactttgt
4441 ggtgtcagtc caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat
4501 agcacattgg atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt
4561 gatccaagct cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat
4621 caacttggac ccagcaaagc taaccttaaa actcagggaa tatggattgg tccccaccag
4681 accagacaaa actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct
4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattggacc aggattcaat
4801 cttgaggcaa ctctattgga ctagaggacc caaccatgaa aacccctacg agtgcatggt
4861 cccacactca cagcgcgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg
4921 tccccagttc tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct
4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag
5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg
5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag
5161 tcttgccttt agagcccgtc gcgggagtac agctggctgc tcccgtagca gggcaaagta
5221 atataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg
5281 tttcccctcg gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa
5341 atccctatct caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg
5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc
5461 ccagcttccc aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg
5521 tggatgtcag gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt
5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc
5641 ctctccgtgc caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctaacaa
5701 ggccctcacc agattttgac tttattttct tggtcccccc ctctgtagag agtaagttga
5761 aacagtttac ccttccaaac ctgcagccaa atgaaatgac taattcaaga ttccccactg
5821 gtatcacaca actctacacc agtccaaata ccaatttggt tgtccagttc caaaatggca
5881 ggtgtctgct tgatggtaca ctcctcggca ccacccctgt cagagctgct gacatctgca
5941 gtttcagagg agtcacctca actgaagttg atgcaactga cagccccaga gtggcaggat
6001 cccatagaat tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc
6061 ctaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc
6121 aaagaaacac tggcggggct gggcagaact ccaacagagc ccacttcgca tacttctaca
6181 ctagaaaccc cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg
6241 attttcaaaa tcgccaacct actaaattct ctccttctgg tgtgtatgat gatgattctt
6301 ctgaaccttt taatcaattt tctctaccat attataatgg atcactcggt gcagtggatg
6361 ctggaaaact agctcctcct gtagcaccca actacccagg tgagcagatt ctctatttta
6421 gagggaatat tcccttcaaa ggtgggtatg gggagggtga aattgatagc ttgcttcccc
6481 aggagtggat cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc
6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg
6601 gattcatcac aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct
6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaacg
6721 gccgcagggg tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc
6781 tgatgttctc ggcagcggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaatca
6841 aaaggttgaa tatgattaca atagacactt gcagtctgct tctttccaac atgataagga
6901 tatgctcaac tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa
6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa
7021 cgcccctatg acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat
7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcacaagc ctattcccaa
7141 tgttgttcac aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc
7201 ttctctctcc acatcatcca cccatgttcc atcatccaca tcctcatcta gtagtgcttc
7261 tagaacaagg gactgggtgt ctgaacagca aagactcagc cctttcatga gaggctctct
7321 tcacactgca tatgtgactc ctccttcaag ctctgcctcc tcagtaagct ctgtttctac
7381 agtcccacac tatgttttag attcatggac tccttctttt aacactaaac atctaccttt
7441 gtttgctcat gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat
7501 tgatttgttt tgtaattagt gaaatgttga ttctttctaa ttcggcattt
//