Typing tool
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Typing tool
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Complete norovirus genomes
| MN227771 | GIX.1 | |
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| GII.P15 |
ORF1: 4..5100
ORF2: 5081..6748
ORF3: 6748..7479
LOCUS MN227771 7547 bp RNA linear VRL 03-AUG-2019
DEFINITION Norovirus GIX strain Bradford0309 isolate
Hu/US/2017/GII.P15-GIX.1/Bradford0309, complete genome.
ACCESSION MN227771
VERSION MN227771.1
KEYWORDS .
SOURCE Norovirus GIX
ORGANISM Norovirus GIX
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7547)
AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7547
/organism="Norovirus GIX"
/mol_type="genomic RNA"
/strain="Bradford0309"
/isolate="Hu/US/2017/GII.P15-GIX.1/Bradford0309"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:2594528"
/country="USA"
/collection_date="27-Dec-2017"
/note="genotype: GIX.1-GII.P15"
gene 4..5100
/gene="ORF1"
CDS 4..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QDR48002.1"
/translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK
ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLFT
VKNESEHSPYTVPPLSEREHRSATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP
AAISLATIDLTPISLYWRPVYTPPCLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ
GPEDLAVELVPIIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR
RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL
ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP
DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL
TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN
VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTAL
LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS
SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK
YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT
GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN
LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC
GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL
GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR
GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN
GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG
TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS
TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS
QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE
YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
mat_peptide 4..1005
/gene="ORF1"
/product="p48"
mat_peptide 1006..2103
/gene="ORF1"
/product="NTPase"
mat_peptide 2104..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6748
/gene="ORF2"
CDS 5081..6748
/gene="ORF2"
/codon_start=1
/product="VP1"
/protein_id="QDR48003.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6748..7479
/gene="ORF3"
CDS 6748..7479
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="QDR48004.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV
PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD
SWTPSFNTKHLPLFAHVRKRGQSQV"
ORIGIN
1 tgaatgaaga tggcgtcgaa tgacgtcgtt actgcccttg gcagccagaa agctaccaat
61 gacagctata gcacacctcc ccccaacaag gaggaggcta gtgtgcttgc caacgttaaa
121 gttggcttta aaaagatcct cggggccgtc cctaaggctc cgaaacagca tggcagcata
181 caaaaaccgc cgatcgtcga gatcgatggt gtggccatgc gtgtaccctc tcccccccca
241 aacggtgagg acgcagtcca cttcgtgaag gaaacggaga ccatcaaggg actgccagat
301 ttgttcaccg tgaagaacga atctgaacac tccccgtaca cagtcccccc gttgagtgag
361 agggagcaca ggtcagcaac agagccattg cccggcacta tacttgagat gtgggatggt
421 gagttctatc actactccat atacgtggac aatggcaagg cccttggtgt tcacaaacca
481 ccagcagcaa ttagcctagc aacgatagat ttaacaccta tatcgttgta ctggagaccg
541 gtttacacac cgccgtgcct tgttcaccca gagacgctca agggactggc tggcgagaag
601 ttcccctaca cggccttcag caacaactgc tacaacttct gttgctgggt tctggacctc
661 aatgattcgt ggttgaaccg gagatccata actagaacaa ctggattctt caaaccctac
721 caatcctgga ataggaagcc ccttccaact gtagatgatg gcaagatcaa gaaggtcgcg
781 aatgcagttc tgtgtgccct aggatcactt ttctccaagc ccattaagga cctccttggc
841 aaattaaaac ccctcaatct cctaaacttg cttgcatcat gtgactggac ctttgctggt
901 gtggtggaga cagtcattct tgcagcagag ctcttcaatg tcttttggac tccacctgat
961 gtctccaact tcattgcttc tataattggc gacttcgaga tgcaaggacc agaggatctt
1021 gctgtggagc ttgtccctat tattatggga ggcattggta tggtgttagg gtttacagct
1081 gagaagatag ggcgtatgtt atcatctgca gcatccaccc tcagggcttg taaggacctt
1141 ggcaattacg ccttagacat cctaaaacta gtcatgaagt ggtttttccc taaaaaggag
1201 gaaaaggccg agatggaaac cctgagggcc attgaggacg ctgtccttga catggaggca
1261 attggaaaca accacctcac aacactgctc aaagacaagg atagcttgag cgcctacatg
1321 aagaccttag acatggagga ggagaaggcc aggaggctct ccactaaatc atcatcaccc
1381 gacattgttg gcaccatcaa cgcgatcctc gcacgcattg ctgccgcaag atcactccta
1441 cacaaagcca aagaggaaat gttcagtcga gcgaggcctg ttgtagttat ggtatctgga
1501 agacccggca tcgggaagac atatctggct agacagcttg ccaaatcgat tgcaaacagc
1561 atgagtggtg atcagagagt gggactcgtc ccccgcaatg gggttgacca ctgggatgcc
1621 tataggggtg aaagagttgt cctatgggat gactatggta tgggaaatac aatcaaagat
1681 gccctgaccc tacaagagtt ggctgacacc tgcccagtta ccctcaactg tgacaggatc
1741 gaaaacaagg ggaagatgtt tgacagtgat gtcatcataa taacaaccaa tcttgtcaac
1801 cccgctcccc tcgattatgt taattttgag gcttgctgta ggcgaattga cttccttgtt
1861 tatgccgagg caccggacat tgagaaagtc aaaaaggatt tccctggaca acctgacatg
1921 tggcgtgacc attttaaagc tgactcgtca cacataaagt tatcactagc cccacagggt
1981 ggttttgaca agaacggaaa cacccctcac gggaagggca ccatgaaaac tctcacgcta
2041 cactcactca ccgcacgtgt gatgggttta gtgtgtgaga ggaaggatga gttccaactg
2101 cagggtgatg aattacaggt ttataacttt gacacaaaca aggtctctgc atttagaaaa
2161 ctagcagctg acaacaagta cagttttgtg gagacaatga aagttggtgc agtcctcaag
2221 aacgtaaaaa ccctggaaga tctgaaatct gccctcaagg gagttaaatt caaagagtgt
2281 gaaataattt acaagggggc caagtataga gttgcctcgg atggttgtgg cagtgtctca
2341 gtttccaaga tcaaggatgt tgtgtcgcag acagccaatg aagtgcacac agcgctcctg
2401 agattgaggc aagcccgggc caggtattac atcagctgct tccaagatct catatacacc
2461 ctaatacagg ttgctggagc ctcatttgtg gtgcatagaa tctcaaagag attctcatgg
2521 gaccgctgga tcaaacccag tgatagccct caggaggaag aacaacccag cagtgaggtg
2581 gccacaggga gatgggaaat tgagccaaaa gacacagacc ctgaaggcaa aaagggtaaa
2641 aacaagaagg gaaggggaag gaaacacacg gctttctcta gtaagggtct tagtgatgaa
2701 gagtatgatg agttcaaaag aattagagag gagaagaacg gcaaatactc catagaagaa
2761 tacctccagg accgtgacag attttacgag gaagtggcag ttgcaagggc aacggaagag
2821 gacttctgtg aggaagaagt ggcaaagatc agacagagaa tcttcaggcc cacaaagaag
2881 cagaggaagg aggagcgggg cgtcctaggg ctggtcactg gttcagaaat caggaagaga
2941 agaccagatg acttccagcc taaaggtaac ttgtgggctg atgacaccag gagcgtggac
3001 tacaacgaaa agctggagtt tgaggcccct ccgagcgtgt ggtcacgtat cgtacccctc
3061 ggcactggct ggggtttctg ggtctcctcc aaccttctca taacaacaac acacgtcctg
3121 ccaaaaggat tgaaggagct gttcggggtt gatatcaagc aagtccagat acataagtca
3181 ggtgagttct gcaggttcag gtttccaaga ccaatcagac cagatgtcac aggcctcatc
3241 cttgaagaag gggcccctga aggcacggtg tgttctatcc ttgtcaaaag accgactgga
3301 gagatgatac cacttgcagt gaggatgggc acccacgctt ccatgaaaat ccagggtaga
3361 acggttggtg gtcaaatggg catgttgctc acaggagcaa atgccaaaaa catggacttg
3421 ggcacgaacc ctggtgattg tggatgcccg tacattttta agaggggcaa tgacattgtg
3481 gtagctgggg tccacactgc agctgcacgg ggtggcaaca ctgtgatctg tgccacgcaa
3541 ggagctgacg gagaggccgt ccttgaagga ggagaagaca aagggacata ctgtggtgcc
3601 ccaatacttg gactcgggaa ggcccccaaa ctcagcacca agacaaagtt ctggcgatcc
3661 tcccctgatg cgcttccccc gggaacgtat gagccagcat acctaggtgg aaaggaccca
3721 agggttgaga agggcccgtc actccagcag gtcatgagag aacaacttaa acctttcacc
3781 gaacccagag gaaaaccccc gaaacccaac gttcttgatg aggcaaagaa aactgtgatg
3841 aacgtgttgg agcagactat aaaccctgcc aaaccctggt catactccca ggcatgtgct
3901 tcgcttgaca agacaacttc aagtggtagc ccgcaccacc tgagaaagaa tgatcattgg
3961 aatggtgaat cttttaccgg tcctttggcc gaccaagctt caaaagcaaa cctaatgtat
4021 gagcaggcaa aacacatgag ccccgtttac actgcggccc tcaaagatga actggtcaag
4081 actgataaga tttacaagaa aataaagaag aggctgctgt ggggttctga cctgggtacc
4141 atggtcaggt gtgctagggc ttttggtggg ttgatggata gcatgaaaga gagttgtgtg
4201 atgttaccct gcagagttgg catgaacatg aatgaagatg gaccaatcat ttttgacaaa
4261 catgcaaagt acaaatatca ctatgatgca gattactcca gatgggattc cacacaacaa
4321 aggagcatct tatctgctgc catggaggtt atggtgaagt tctcagctga accggaactg
4381 gcacaagtgg tcgctgaaga cttgctcgcc ccaagccaac tcgacgtggg cgactttgtg
4441 gtgtcagtcc aagaaggtct cccctcaggt gttccgtgca cttcccaatg gaactccata
4501 gcacattgga tcatcaccct tagtgcaatg gcagaagttt ctggtctctc cccagatgtg
4561 atccaagctc actcatgctt ctctttctat ggtgatgatg agatagttag tacagacatc
4621 aacttggacc cagcaaagct aaccttaaaa ctcagggaat atggattggt ccccaccaga
4681 ccagacaaaa ctgaaggccc attagtcatc acagaggacc tccatgggtt gaccttccta
4741 cgcagacaca tcacacgaga tcctgctgga tggtttggaa aattagacca ggattcaatc
4801 ttaaggcaac tctattggac tagaggaccc aaccatgaga acccctacga gtgcatggtc
4861 ccacactcac agcgcgcaac ccagttaatg gcgctgctgg gtgaggcatc attgcacggt
4921 ccccagttct acaagaaagt cagcaaaatg gttatcaatg aaattaagag tggtggtctg
4981 gaattttacg tgcccagaca ggaggccatg ttcagatgga tgagattctc tgacctcagc
5041 acatgggagg gcgatcgcaa tctggctccc gacggtgtga atgaggatgg cgtcgagtga
5101 cgcgcccgtt tctggcaccg atggtgcggc aggactcgtc ccagagagtc aacaagaagt
5161 cttgccttta gagcccgtcg cgggagttca gctggctgct cccgtagcag ggcaaagtaa
5221 tataattgac ccctggatta gaatgaattt tgtgcaagcc ccggccggtg agttcactgt
5281 ttcccctcgg aacgcaccgg gtgaggtgct tattgattta gaattaggac cagaattaaa
5341 tccctatctc aatcaccttg caagaatgta caatgggtat gtgggaggaa tggaggtgga
5401 agttgtcctt gccgggaatg cgttcacggc gggtaagatc ttattcgcgg ctgtgccccc
5461 cagcttccca acccatggca tttctgcagc acaggcaacc atgttgccac atgtgattgt
5521 ggatgtcagg cagctggagc ctgtccggct ccctcttcct gatgttagga atgtgatgtt
5581 ccatttctgt caagaaaata aggagccgcg catgagaatt gtggcaatat tgtacacccc
5641 tctccgcgcc aacggtgcgg gtgatgatgt tttcactgtc tcatgccgtg tgctaacaag
5701 gccctcacca gattttgact ttattttctt ggtccccccc tctgtagaga gtaagttgaa
5761 acaatttacc cttccaaacc tgcagccaaa tgaaatgacc aattcaagat tccccactgg
5821 catcacacaa ctctatacca gtccaaatac caatttggtt gtccagttcc aaaatggcag
5881 gtgtctgctt gatggcacac tcctcggcac tacccctgtc agagctgctg acatctgcag
5941 tttcagagga gtcacctcaa ctgaagttga tgcaactgac agtcccagag tggcagggtc
6001 gcatagaatt atggtgcagc tcaaggagcc agatggagag gagttttcac ccacaggtcc
6061 taaccctgcc cctgttggca ctccagactt tcaagcagcc atatttggca cccttagtca
6121 aagaaacact ggcggggctg ggcagaactc caacagagcc cacttcgcat acttctacac
6181 tagaaacccc acatttgcac caggcatagg gacagttgtg ttttcttttg atactactga
6241 ttttcagaat cgccaaccta ctaaattctc tccttctggt gtgtttgatg atgattcttc
6301 tgaacctttt aatcaatttt ctctaccata ttataatggg tcactcggtg cagtggatgc
6361 tgggaaacta gctccgcctg tagcacccaa ctacccaggt gagcagattc tttattttag
6421 agggaatatt cccttcaaag gtgggtatgg agagggtgaa attgatagct tgcttcccca
6481 ggaatggatc acccactttt atgcagagca ggctcctaca caaggtgacg cagccctgct
6541 gcgttactac aaccctgaca ctggcagagt cctctttgag tgcaaactcc accgcgaggg
6601 attcatcaca atcaattaca cagggtctaa tgctcttgct gtaccagtca atggagtctt
6661 caggtttgag ggctgggtta acaaattcta cacactgacc cccatgggaa atggcaacgg
6721 ccgcaggggt agaagaaggg agttataatg gctggagctt tctttgcagg tcttgcttct
6781 gatgttctcg gcagcggttt gtcttcactt atcggtgccg gtgctaatgc cataaatcaa
6841 aaggttgaat atgattacaa taggcacttg cagtcagctt ctttccaaca tgataaggat
6901 atgctcaact cacaggtgga agccacaaag cacttacaaa gggagatgat ggccatcaag
6961 gaaggcatgc tgctcaaggg tgggttctcc cccactgatg cagcaagagg agctgtcaac
7021 gcccctatga cacaaatctt ggattggaat ggcaccaggt actgggcccc gggtgcaatg
7081 aaaaccacgg cttactcagg ccgttttgtt agccaatcca ctcataggcc tattcccaat
7141 gttgttcaca agagtgatgg acccatacac caaactgggt caaccacagg gtccatttct
7201 tctctctcca catcatccac ccgtgttcca tcatctacat cctcatctag tagtgcttct
7261 agaacaaggg actgggtgtc tgaacagcag agactcagcc ctttcatgag aggttctctt
7321 cacactgcat atgtgactcc tccctcaagc tctgcctctt cagtgagctc tgtttctaca
7381 gtcccacact atgttttaga ttcatggacc ccttctttta acactaaaca tctacctttg
7441 tttgctcatg ttaggaaaag gggacaatct caagtttaat ctaccactca tggtttgatt
7501 gatttgtttt gtaattagtg aaatgttgat tctttctaat tcgacat
//