Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MN227770 | GIX.1 | |
|
|---|---|---|---|
| GII.P15 |
ORF1: 5..5101
ORF2: 5082..6749
ORF3: 6749..7480
LOCUS MN227770 7550 bp RNA linear VRL 03-AUG-2019
DEFINITION Norovirus GIX strain Pulaski0185 isolate
Hu/US/2017/GII.P15-GIX.1/Pulaski0185, complete genome.
ACCESSION MN227770
VERSION MN227770.1
KEYWORDS .
SOURCE Norovirus GIX
ORGANISM Norovirus GIX
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7550)
AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7550
/organism="Norovirus GIX"
/mol_type="genomic RNA"
/strain="Pulaski0185"
/isolate="Hu/US/2017/GII.P15-GIX.1/Pulaski0185"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:2594528"
/country="USA"
/collection_date="14-Dec-2017"
/note="genotype: GIX.1-GII.P15"
gene 5..5101
/gene="ORF1"
CDS 5..5101
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QDR47999.1"
/translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK
ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVRFVKETETIKGLPDLST
VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP
AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ
GPEDIAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR
RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL
ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP
DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL
TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN
VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTAL
LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS
SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK
YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT
GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN
LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC
GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL
GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR
GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN
GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG
TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDS
TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS
QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE
YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RdRp"
gene 5082..6749
/gene="ORF2"
CDS 5082..6749
/gene="ORF2"
/codon_start=1
/product="VP1"
/protein_id="QDR48000.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSSRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6749..7480
/gene="ORF3"
CDS 6749..7480
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="QDR48001.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV
PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHHVLD
SWTPSFNTKHLPLFAHVRKRGQSQV"
ORIGIN
1 gtgaatgaag atggcgtcga atgacgtcgt tactgccctt ggcagccaga aagctaccaa
61 tgacagctat agcacacccc cccccaacaa ggaggaggct agtgtgcttg ccaacgtcaa
121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat
181 acaaaaaccg ccgatcgttg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc
241 aaatggtgag gacgcagtcc gcttcgtgaa ggaaacggag accatcaagg gactaccaga
301 tttgtccacc gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga
361 gagggagcac aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg
421 tgagttctat cactactcca tatacgtgga caatggcaag gcccttggtg ttcacaaacc
481 accagcagca attagcctag caacgataga tttgacacct atatcgttgt actggagacc
541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa
601 gtttccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct
661 caatgattca tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta
721 ccaatcctgg aataggaaac cccttccaac tgtggatgat ggcaagatca agaaggtcgc
781 gaatgcagtt ctgtgcgccc taggatcact tttctccaag cccattaaag acctccttgg
841 taaattgaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg
901 tgtggtggag acagttattc ttgcagcaga gctcttcaat gtcttttgga ctccacctga
961 tgtctccaac ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatat
1021 tgctgtggag ctcgttcctg ttatcatggg aggcattggt atggtgttgg ggttcacagc
1081 tgagaagata gggcgtatgt tatcatctgc agcatccact ctcagggctt gtaaggacct
1141 tggcaattac gccttagaca tcctgaaatt agtcatgaag tggtttttcc ctaaaaagga
1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctgtccttg acatggaagc
1261 aattggaaac aaccacctca caacactgct caaagacaaa gatagcttga gcgcctacat
1321 gaagacctta gacatggagg aggagaaggc taggaggctc tccactaaat catcatcacc
1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gccgccgcaa ggtcactcct
1441 acacaaagcc aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg
1501 aagacccggc atcgggaaga catatctggc tagacagctt gccaaatcga ttgcaaacag
1561 catgagtggt gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc
1621 ttataggggt gaaagagttg tcctatggga tgactatggc atgggaaata caatcaaaga
1681 tgccctgacc ctacaagagt tggctgacac ctgcccagtt accctcaatt gtgacaggat
1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa
1801 ccccgctccc ctcgattatg tcaattttga ggcttgctgt aggcgaattg acttccttgt
1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat
1921 gtggcgtgat cattttaaag ctgactcgtc acacataaag ttgtcactag ccccacaggg
1981 tggctttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct
2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact
2101 acagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa
2161 actagcagct gacaacaagt atagctttgt ggagacaatg aaagtcggtg cagtcctcaa
2221 gaacgtaaaa actctggaag atctgaagtc tgccctcaag ggagtcaaat tcaaagagtg
2281 tgaaataatt tacaaggggg ccaagtatag agtcgcctcg gatggctgtg gcagtgtctc
2341 agtttccaag atcaaggatg ttgtgtcgca gacagccaat gaagtgcaca cagcgctcct
2401 gagattgagg caagcccggg ccaggtatta catcagctgc ttccaagacc tcatatacac
2461 cctaatacag gttgctggag cctcatttgt ggtgcatagg atctcaaaga gattctcatg
2521 ggaccgctgg atcaagccca gtgatagccc tcaggaggaa gaacaaccca gcagtgaggt
2581 ggccacaggg agatgggaaa ttgagccaaa agacacagac cctgaaggca aaaagggtaa
2641 aaataagaaa ggaaggggaa ggaaacacac agctttctct agtaagggtc ttagtgatga
2701 agagtatgat gagttcaaaa gaatcagaga ggaaaagaac ggcaaatact ccatagaaga
2761 atacctccag gaccgtgaca gattttatga ggaagtggca gttgcaaggg caacggaaga
2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa
2881 gcagaggaag gaggagcgag gcgtcctagg gctggttact ggttcagaaa tcaggaagag
2941 aagaccagat gactttcagc ctaaaggcaa cttgtgggct gatgacacca ggagcgtgga
3001 ctacaacgaa aagctggagt ttgaggcccc tccaagcgtg tggtcacgta tcgtacccct
3061 cggcactggc tggggtttct gggtctcctc caacctcctc ataacaacga cacacgttct
3121 gccaaaagga ttgaaggagc tgttcggggt tgacatcaaa caagtccaga tacacaagtc
3181 aggtgagttc tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat
3241 ccttgaagaa ggggcccctg aaggcacggt gtgttccatc cttgtcaaaa gaccgactgg
3301 agagatgata ccacttgcag tgaggatggg cacccatgct tccatgaaaa tccagggtag
3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt
3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt
3481 ggtggctggg gttcacactg cagctgcgcg gggtggcaac actgtgatct gtgccacgca
3541 aggagctgat ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc
3601 cccaatactt ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcgatc
3661 ctcccctgat gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaggaccc
3721 aagggttgag aagggcccgt cgcttcagca ggtcatgaga gaacaactta aacctttcac
3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat
3841 gaacgtgttg gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc
3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg
3961 gaatggtgaa tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta
4021 tgaacaggca aaacacatga gccccgttta cactgcagcc ctcaaagatg agctggtcaa
4081 aactgataag atttataaga aaataaagaa gaggctgctg tggggttctg atctgggtac
4141 catggtcagg tgtgccaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt
4201 gatgttaccc tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa
4261 acattcaaaa tacagatatc actatgatgc agattactcc agatgggatt ccacacaaca
4321 aaggagcatc ttatctgctg ccatggaggt tatggtgaag ttctcagctg aaccagagct
4381 ggcacaagtg gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgattttgt
4441 ggtgtcagtc caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat
4501 agcacattgg atcattaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt
4561 gatccaagct cattcatgct tctctttcta tggtgatgat gagatagtta gcacagacat
4621 caacttagac ccagcaaagc taaccttaaa actcagggaa tatgggttgg tccccaccag
4681 accagacaag actgaaggcc cattagtcat cacagaggac ctccatgggt tgaccttcct
4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattagatc aggattcaat
4801 cttaaggcaa ctctattgga ctagaggacc caaccatgag aacccctacg aatgcatggt
4861 cccacactca cagcgcgcaa cccagttaat ggcgctgttg ggtgaggcat cattgcacgg
4921 cccccagttc tacaagaaag tcagcaagat ggttatcaat gaaattaaga gtggtggtct
4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag
5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg
5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag
5161 tcttgccttt agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta
5221 atataattga cccctggatt agaatgaatt ttgtacaagc cccggccggt gagttcactg
5281 tttccccccg gaacgcaccg ggtgaggtgc ttattgattt ggaattagga ccagagttaa
5341 atccctatct caatcacctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg
5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc
5461 ccagcttccc aacccatggc atttctgcag cacaggctac tatgttgcca catgtgattg
5521 tggatgtcag gcagctggag cctgttcggc tccctcttcc tgatgtcagg aatgtgatgt
5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc
5641 ctctccgtgc caacggtgcg ggtgatgatg ttttcactgt ctcatgtcgt gtgctaacaa
5701 ggccctcacc agattttgat tttattttct tggtcccccc ctctgtagag agtaagctga
5761 aacagtttac ccttccaaac ctgcagccaa atgaaatgac caattcaaga tttcccactg
5821 gtatcacaca actctacacc agtccaaata ccaatttggt tgtccagttc caaaatggca
5881 ggtgtctgct tgatggcaca cttctcggca ccacccctgt tagagctgct gacatctgca
5941 gtttcagagg agtcacctca actgaagttg atgcaactga cagttccaga gtggcagggt
6001 cgcatagaat tatggtgcag ctcaaggagc cagatggaga ggagttttca cctacaggtc
6061 ccaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc
6121 aaagaaacac tggcggggct gggcagaatt ccaacagagc ccacttcgca tacttttaca
6181 ctagaaaccc tacatttgca ccaggcatag ggacagttgt gttttctttt gatactactg
6241 attttcagaa tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt
6301 ctgaaccttt taatcaattt tctctaccat attataatgg atcactcggt gcagtggatg
6361 ctgggaagct agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta
6421 gagggaatat tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgctccccc
6481 aggaatggat cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc
6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg
6601 gattcatcac aattaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct
6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg
6721 gccgcagggg tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc
6781 tgatgttctc ggcagcggtt tgtcttcact aatcggtgcc ggtgccaatg ccataaatca
6841 aaaggttgaa tatgattaca ataggcactt gcagtcagct tctttccaac atgataagga
6901 tatgctcaac tcacaggtgg aagccacaaa gcacttacaa agggagatga tggccatcaa
6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa
7021 cgcccctatg acacaaatct tggattggaa tggcaccaga tactgggccc cgggtgcgat
7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcataggc ctattcccaa
7141 tgttgtgcac aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc
7201 ttctctctcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtgcttc
7261 tagaacaagg gactgggtgt ctgaacagca aagactcagc cctttcatga gaggctctct
7321 tcacactgca tatgtgactc ctccctcaag ctctgcctct tcagtaagct ctgtttctac
7381 agtcccacac catgttttgg actcatggac cccttctttt aacaccaaac atttaccttt
7441 gtttgctcat gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat
7501 tgatttgttt tgtaattagt gaaatgttga ttctttctaa ttcggcatta
//