Typing tool
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Typing tool
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Complete norovirus genomes
| MN199033 | GII.3 | |
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| GII.P12 |
ORF1: 2..5101
ORF2: 5082..6728
ORF3: 6728..7492
LOCUS MN199033 7565 bp RNA linear VRL 27-JUL-2019
DEFINITION Norovirus GII isolate CAU140599 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MN199033
VERSION MN199033.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7565)
AUTHORS Seo,D.J., Jung,D., Jung,S., Ha,S.K., Ha,S.D., Choi,I.S., Myoung,J.
and Choi,C.
TITLE Experimental miniature piglet model for the infection of human
norovirus GII
JOURNAL J. Med. Virol. 90 (4), 655-662 (2018)
PUBMED 29106738
REFERENCE 2 (bases 1 to 7565)
AUTHORS Choi,C.
TITLE Direct Submission
JOURNAL Submitted (21-JUL-2019) Infectious disease, College of veterinary
medicine, Konkuk University, 120, Neungdong-ro, Gwangjin-gu, Seoul
05029, South Korea
COMMENT ##Assembly-Data-START##
Assembly Method :: Trinity v. trinityrnaseq_r20140717, bowtie
1.1.2
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7565
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="CAU140599"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="South Korea"
/collection_date="01-May-2014"
/note="genotype: GII.p12_GII.3"
gene 2..5101
/gene="ORF1"
CDS 2..5101
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QDP15995.1"
/translation="MKMASNDASAAAAANSNNDNAKSSSDGVLSSMAVTFKRALGARH
KQPPPRETPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELVPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
SELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVRVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASKDGC
PKPQDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGRPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 2..991
/gene="ORF1"
/product="p48"
mat_peptide 992..2089
/gene="ORF1"
/product="NTPase"
mat_peptide 2090..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RdRp"
gene 5082..6728
/gene="ORF2"
CDS 5082..6728
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QDP15997.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRTSDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6728..7492
/gene="ORF3"
CDS 6728..7492
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QDP15996.1"
/translation="MAGAFVAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQVVHRTTPNFKMNQAPKSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGPTAASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 aatgaagatg gcgtctaacg acgcttccgc tgccgctgct gctaatagca acaacgacaa
61 cgcaaaatct tcaagtgacg gagtgctttc tagcatggct gtcactttta aacgagccct
121 cggggcgcgg cataaacagc ctcccccgag ggaaacacca caaaggcctc cacggccacc
181 caccccagaa ctggtcaaaa agatccctcc tcccccaccc aacggggagg atgagctagt
241 ggtctcttac agcgccaaag atggcgtttc tggtttgcct gaacttacca ctgtctggca
301 accggatgag accaacacgg cattcagtgt tccccctctc aaccagaggg agaacaggga
361 cgccaaggag ccgctgaccg gaacaatcct ggaaatgtgg gacggggaga tctatcatta
421 cggtctgtat gtggagcgag gccttgtact tggtgtgcac aaaccaccag ctgccatcag
481 cctcgccaag gttgaactag taccactctc tctgttttgg aggccagtgt acacaccaca
541 gtatctcatc tctccagaca ctctaaggag actgcatgga gagtcgttcc cctacacagc
601 ctttgacaac aactgctatg ccttctgttg ttgggttctg gacctaaacg actcgtggtt
661 gtgcaggaga atgatccaga gaacaactgg cttcttcaga ccttaccaag aatggaacag
721 gaaacccctc cccaccatgg atgactctaa attgaaaaag gtagccaaca tattcttgtg
781 tgcgctatct tcgctattca ctaggcccat caaagacata ataggaaagg tgagaccgct
841 caacatcctt aacatcctgg cctcatgtga ttggactttt gcaggcatag tggaatcttt
901 gatcctcttg gcagagctct ttggagtttt ctggacaccc ccagatgtgt ctgcgatgat
961 cgccccctta ctaggtgact acgaactaca ggggcctgag gaccttgcag tggaactcgt
1021 accagtagtg atggggggga ttggtttggt gttaggattc accaaagaga agatcggaaa
1081 aatgttgtca tctgctgcat ccaccttaag agcttgtaaa gaccttggtg catacggact
1141 ggaaatccta aaattggtca tgaaatggtt cttcccaaag aaagaggaag caaatgagct
1201 agctatggtg aggtccatcg aggatgcggt gctggacctc gaagcaattg agaacaacca
1261 catgaccgcc ctcctcaaag acaaagacag cttggcaacc tacatgagga cccttgacct
1321 cgaggaggag aaagccagga agctttcaac caagtctgct tcacctgaca tcgtgggcac
1381 aatcaacgct ctcctggcga gaatcgccgc tgcacgttcc ctggtgcatc gggcgaaaga
1441 ggaactctcc agcagaccaa gacctgttgt tgttatgata tcaggcagac cagggatagg
1501 gaaaactcac cttgccaggg agctagccaa gaagatcgca gcttcgctca caggggacca
1561 gcgcgtgggc ctcatccctc gcaatggcgt tgaccactgg gatgcataca agggagaaag
1621 agtcgtccta tgggacgatt atggaatgag taatcccatc cacgacgccc tcaggttaca
1681 ggaacttgct gacacctgcc cccttacgct aaactgtgac aggattgaga acaaaggaaa
1741 ggtctttgac agtgatgcca taatcatcac cactaatcta gccaacccag caccattgga
1801 ctatgtcaac tttgaagcat gctcgaggcg cattgatttc ctcgtgtacg cagaagctcc
1861 tgaggtcgag aaagcaaagc gtgatttccc aggtcaacct gacatgtgga agaacgcatt
1921 tagctctgac ttctcgcaca taaaactggc gctggctccg caaggtggtt tcgacaagaa
1981 cggaaacacc ccacacggga aaggcgttat gaaaaccctc accactggtt ccctcatcgc
2041 ccgagcatca gggctactcc atgagaggtt agatgagtac gagctgcagg gcccaacccc
2101 caccaccttt aactttgacc gcaacaaggt gcttgcgttc agacagcttg ctgccgaaaa
2161 caagtacgga ttgttggaca caatgagagt tggaaaacag ctcaaggatg ttaagaccat
2221 gtcagagctc aaacaggcac tcaagaatgt cgcaatcaag agttgtcaga tagtgtatgg
2281 tggctgcacc tacaggcttg agtctgatgg caagggtgat gtaagagttg acagagttca
2341 gaacgccact gtacagacca acaatgagct tgccggcgcc ctacaccatc ttaggtgcgc
2401 cagaatcaga tattatgtca agtgtgttca ggaggccctg tattccatca tccaaattgc
2461 tggggctgca tttgttacca cgcgcattgt caagcgcatg aacatacaag atctctggtc
2521 caagccacag gtggaggata cagaggaaac cgctagcaag gatgggtgcc caaaacccca
2581 ggatgatgaa gagtttgttg tctcatccga tgacatcaaa accgaaggca agaaagggaa
2641 gaacaagtct ggccgtggca agaagcacac agcattctca agtaaaggtc tcagtgatga
2701 agagtacgat gagtacaaaa gaatcagaga agaaagaaat ggcaaatact ccatagagga
2761 atacctccag gacagagaca ggtactatga ggaggtggcc atcgccaggg caaccgaaga
2821 ggacttctgt gaagaagaag aggccaagat ccgacagagg atctttaggc caacaagaaa
2881 acaacgcaaa gaggagagag cctctctcgg tttggtcaca ggttctgaaa tcaggaagag
2941 gaacccagac gacttcaagc ctaaaggaaa actgtgggct gatgatgaca ggagtgttga
3001 ctacaatgag agactcaatt ttgaagcccc accaagcatc tggtcgagga tagtcaactt
3061 tggctcaggt tggggctttt gggtttcccc cagcctgttc ataacatcaa ctcatgtcat
3121 accccagggc gcacaggagt tctttggtgt acccatcaaa caaattcaga tacacaaatc
3181 aggtgaattc tgccgcttga ggtttccaaa gccgatcaga actgacgtga caggcatgat
3241 cttagaagaa ggtgcacccg aagggaccgt ggtcacatta ctcattaaaa gaccaactgg
3301 agagctcatg cccctggcag ccagaatggg aacccacgca accatgaaga tacaagggcg
3361 cactgttgga ggtcaaatgg gcatgctcct aacaggatcc aacgctaaga gtatggacct
3421 gggcaccaca ccaggtgact gtggctgccc ctacatttac aagaggggga atgactacgt
3481 ggtcattggg gtccacacag ctgccgcccg tggaggaaac actgtcattt gtgccaccca
3541 ggggagcgag ggagaagcca cacttgaagg cggtgacagc aaggggacct actgcggtgc
3601 accaatctta ggtccaggaa gtgccccaaa actcagcacc aagaccaagt tctggaggtc
3661 atccacggca ccactcccac ctggtaccta tgagccagct tacctcggcg gcaaggaccc
3721 cagagttaag ggtggccctt cactgcaaca agttatgagg gatcaactga aaccattcac
3781 tgagcctagg ggtagaccac caaaaccaag tgtgctagaa gctgccaaga aaaccatcgt
3841 caatgtcctt gaacagacaa ttgacccacc tcaaaagtgg tcgtttgcgc aggcatgcgc
3901 atcccttgac aagaccactt ctagcggtca tccgcaccac atgcggaaga acgactgttg
3961 gaacggggag tcctttacag gaaaattggc agaccaggct tccaaggcca acctgatgtt
4021 tgaggaggga aagaacatga ccccagttta cacgggtgcg cttaaggacg agctggtcaa
4081 gactgacaag atttatggta agatcaaaaa gaggcttctc tggggttcgg acctggcgac
4141 catgattcgg tgcgctcgag cattcggggg tctgatggag gaactcaaag cacattgtgt
4201 cacactacct gttagggtgg gtatgaatat gaatgaggat ggccctatca tctttgagag
4261 acactccagg tataaatatc attatgatgc tgactactcc cggtgggatt caacacaaca
4321 aagagccgtg ttggcagcag ccttagaaat catggtcaag ttttccccag agccgcacct
4381 ggcccaaaag gttgcagaag accttctttc tcccagtgtg atggacgtgg gtgatttcaa
4441 aatatcaatc aatgagggtc tcccctccgg agtgccctgc acctcccaat ggaattccat
4501 cgcccactgg ctcctcactc tctgtgcact ctccgaggtt acaaacctgt cccctgacat
4561 tattcaggcc aactctctct tttctttcta cggtgatgat gaaattgtga gtacagacat
4621 aaaattggac ccagaaaaac tgacagcaaa acttaaggaa tacgggttga aaccgacccg
4681 ccctgacaag actgaagggc ctcttgtcat ttccgaagac ctgaatggcc taaccttcct
4741 gcggaggacc gtgactcgcg acccagcagg ctggtttgga aagttggaac agagctcaat
4801 actcagacaa atgtactgga ctaggggccc caaccatgaa gatccatctg aaacaatgat
4861 accacactcc cagaggccca tacaattgat gtctttgctg ggtgaggcag cactccacgg
4921 cccagcattc tacagcaaaa tcagtaaact ggtcattgca gagttgaagg aaggtggcat
4981 ggatttttac gtgccaagac aagagccaat gttcagatgg atgagattct cggatctgag
5041 cacgtgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg
5101 acgccacccc atctaatgat ggtgccgccg gcctcgtccc agagatcaac aatgaggcaa
5161 tggcgctaga gccagtggcg ggtgcagcga tagcggcacc cctcactggc cagcaaaata
5221 taattgatcc ctggattatg aataattttg tgcaagcacc tggtggtgag ttcacagtgt
5281 ctcctaggaa ttcccctggt gaagtgctcc tcaatttgga attgggccca gaaataaacc
5341 cctatctggc ccatcttgct agaatgtata atggttatgc aggtgggttt gaagtgcagg
5401 tagtcctagc tggaaatgcg tttacagcag gaaagataat ctttgcagct atacccccta
5461 acttcccaat tgacaatcta agtgcagcac agatcacaat gtgcccacat gtgattgtgg
5521 atgtcaggca gttggaaccg gtcaacctcc cgatgcctga cgttcgcaat aacttcttcc
5581 actacaacca agggtctgat tcgagattgc gcttggttgc aatgctgtac acacctctta
5641 gggcaaataa ctctggggat gatgttttca ctgtgtcttg tagagtgctg actagaccta
5701 gccctgaatt ttcatttaac ttccttgtgc cacccactgt ggagtcaaag acaaaaccct
5761 tcaccctccc aattctgact atctctgaaa tgtctaattc taggtttcca gtgccgattg
5821 attctctgca caccagccca actgagaata ttgttgtcca gtgccaaaat gggcgcgtca
5881 ctcttgatgg tgagttgatg ggcaccactc agctcttacc tagtcaaatc tgtgctttca
5941 ggggcgtgct cactagatca acaagcagga ctagtgacca ggccgacaca gcaaccccta
6001 gattgtttaa ttattattgg cacatacaat tggataatct aaatgggact ccttatgatc
6061 ctgcagaaga cataccaggc cccctgggga caccagattt ccggggcaaa gtctttggcg
6121 tggccagcca aagaaacccc gacagtacaa ctagagcaca tgaagcaaag gtggacacaa
6181 cagctggtcg cttcacccca aaactaggct cactagagat atccactgaa tctggtgact
6241 ttgaccaaaa ccaaccaaca agattcaccc cagttggcat tggggttgac cacgaggcag
6301 acttccaaca atggtcctta cccgactact ctggccagtt cactcacaac atgaacttag
6361 ccccagctgt tgctcccaac ttccctggtg agcagctcct tttcttccgc tcacagttac
6421 catcttctgg tgggcgatcc aatgggattc tagactgcct ggtcccccaa gaatgggttc
6481 agcacttcta ccaagaatca gcccccgccc aaacccaggt ggctctggtt agatatgtca
6541 accctgacac tggtagagtg ttgtttgagg ccaagctgca caaattaggc ttcatgacta
6601 tagctaagaa tggtgactct ccaataactg ttcccccaaa tggatacttt aggtttgaat
6661 cttgggtgaa cccattttat acacttgccc ccatgggaac tgggaatggg cgtagaagag
6721 ttcaataatg gctggagctt ttgtagcagg attagctggt gatatattca caaacactgt
6781 agggtctcta gttaatgcag gggctaatgc tattaatcaa aaagttgatt ttgaaaataa
6841 taaatatttg caaaatgctt ccttcaatca tgataaggaa atgttaaatg cacagattga
6901 ggcaacaaag aggttacagg ctgacatgat tgctatcaaa cagggggttt tgaccgctgg
6961 cggcttttcc cccactgatg cagctcgcgg ggcaattaat gcccccatga caaaagtcct
7021 agattggaat ggaacaaggt actgggcacc aagtgccacc tctacaacct cgatgtcggg
7081 tggcttcaca aaccaggttg tgcacagaac cacgccaaat tttaaaatga accaggcccc
7141 caaatccaca cccagcagtg ggtcttcagt gaggtcactc tcaacccaag tcactagtct
7201 gagctcacac tcgtccgggt cgtctcgatc cagcgggcct acagctgcta gctcgttacc
7261 atcctctaac aggactaggg actgggtcaa tcagcagaat ttcaatttgg aaccacacat
7321 gcctgggtca cttaggacgg cttttgtcac tccaccatct agtacagcct ctagttcagg
7381 cactgtctca accgtgccca aaaatgtttt ggactcctgg acatctgcgt ttaacacgcg
7441 cagacagccg ctattcgcac accttcgtag aaggggggag tcaaatgttt agtgaaaagg
7501 ttatcttaaa tttgatttaa attggatttg atttggaacc ttttaaaaaa aaaaaaaaaa
7561 aaaaa
//