Typing tool
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Typing tool
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Complete norovirus genomes
| MK956199 | GII.6 | |
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| GII.P7 |
ORF1: 1..2250
ORF2: 2231..3874
ORF3: 3874..4290
LOCUS MK956199 4290 bp RNA linear VRL 12-NOV-2019
DEFINITION Norovirus GII isolate G19_009 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION MK956199
VERSION MK956199.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4290)
AUTHORS Strubbia,S., Schaeffer,J., Oude Munnink,B.B., Besnard,A.,
Phan,M.V.T., Nieuwenhuijse,D.F., de Graaf,M., Schapendonk,C.M.E.,
Wacrenier,C., Cotten,M., Koopmans,M.P.G. and Le Guyader,F.S.
TITLE Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and
Related Bioaccumulated Oysters
JOURNAL Front Microbiol 10, 2394 (2019)
PUBMED 31681246
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4290)
AUTHORS Strubbia,S., Schaeffer,J. and Le Guyader,S.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. v3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4290
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G19_009"
/isolation_source="sewage"
/db_xref="taxon:122929"
/country="France: Nantes"
/collection_date="22-Mar-2018"
/note="genotype: GII.6-GII.P7"
gene <1..2250
/gene="ORF1"
CDS <1..2250
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QCT04942.1"
/translation="RQRIFRPTKKQRKEERGVLGLVTGSDIRKRRPDDFQPKGNLWAD
DTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKGIKELFGVEV
KQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILVKRPTGEMIPLAVRMG
THASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDIVVAGVHTAA
ARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALP
PGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPPRPAVLEEAKKTVMNVLE
QTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESFTGPLADQASKANLMYEQ
AKHVQPVYTAALKDELVKTDKIYRKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCI
TLPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEP
ELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGL
SPDVIQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDL
TGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMAL
LGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAP
EGVNEDGVE"
mat_peptide <1..174
/gene="ORF1"
/product="VPg"
mat_peptide 175..717
/gene="ORF1"
/product="Pro"
mat_peptide 718..2247
/gene="ORF1"
/product="RdRp"
gene 2231..3874
/gene="ORF2"
CDS 2231..3874
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCT04943.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEGIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLIGQTSRSSDSTDSAPRRRDHPLHVQLKNLDGTQYDPTDEVPAVLG
AIDFKGTVFGVASQRDVSGQQVGATRAHEVHINTTDPRYTPKLGSILMHSESDDFVTG
QPVRFTPIGMGDNDWHQWELPDYSGRLTLNMNLAPAVAPAFPGERILFFRSIVPSAGG
YGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRNQ"
gene 3874..>4290
/gene="ORF3"
CDS 3874..>4290
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCT04944.1"
/translation="MASAFLAGLAGDVITNGVGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPADAARGAVNAPMTKILDWSG
TRYWAPNSMKTTSYSGQFSSSPVHKSPAPPQHAVSSK"
ORIGIN
1 agacaaagaa tctttcgccc cacaaagaaa cagaggaagg aagaaagggg ggtgcttggt
61 ttggtcactg gctcagacat caggaagagg agaccagacg attttcaacc gaagggcaac
121 ctgtgggcag acgacaccag gagtgtggat tacaacgaga gacttgattt cgaagctccc
181 ccgagtgtct ggtctagaat agtcccattg ggtactggct ggggcttctg ggtctcatcc
241 aacctcctga tcacaacaac acacgtcctg cctaagggga ttaaggaact ctttggagtt
301 gaagtcaaac agatccaaat tcacaagtct ggagagttct gcaggttcag attcccaaga
361 ccaatcagac cagatgtcac agggctcgtg ttggaggagg gtgctccaga aggcactgtc
421 tgctccatac tcgtgaagag accaacaggt gagatgatcc ctctggcagt gaggatgggc
481 acgcatgcat ccatgaaaat acagggtaga accgtcggtg gtcagatggg aatgcttctc
541 acaggggcaa atgcgaagaa catggatctt ggcaccggcc ctggtgactg tggttgtcct
601 tacatctaca aacgtggcaa tgatatagtt gtcgcgggtg tccacaccgc agcagcccgg
661 ggaggcaaca ctgtcatatg tgccactcaa gggcaagatg gggaggcagt ccttgaggga
721 aatgagaacc ttggaactta ctgcggtgcc ccaattttgg gtccaggcaa ggcgcccaaa
781 cttagcacaa agaccaagtt ctggcgttcg tcaccagacg ctctgccgcc aggcacttat
841 gagcctgcct acttgggagg caaggaccct agagtagaaa agggaccatc cctgcagcaa
901 gtcatgagag accaactaaa acctttcaca gaacccaggg gcaagccacc tagacccgca
961 gtcttagaag aagccaaaaa gacagtgatg aatgttctag aacaaaccat tgatcctgct
1021 aagccatgga cctactccca agcatgcgct tcactggaca agaccacctc cagtggtagc
1081 cctcatcatg tcaggaaaaa tgaccattgg aatggggaat cctttactgg cccccttgca
1141 gaccaagcat ccaaagccaa cctcatgtac gagcaggcca aacatgtgca gcccgtgtac
1201 acggccgcac tcaaagatga gctagtcaag actgacaaga tctacaggaa gataaagaaa
1261 aggctcttat gggggtcgga tcttggtaca atgatcaggt gtgccagggc ctttggtggt
1321 ctcatggata gcatgaaggc aagttgcata accctcccat gtagagtggg aatgaacatg
1381 aatgaagatg gtcccatcat ttttgacaaa cactctaagt ataggtacca ttatgatgct
1441 gactattcca ggtgggactc aacccagcaa aggagcattc tctcggccgc tatggaagtg
1501 atggtgcggt tctctgccga accagagctg gcacaagtgg ttgcagagga cctcctggca
1561 cccagccaac tagatgttgg cgactttgtc atctcagttc aggagggtct gccgtcaggg
1621 gtaccatgta catcacaatg gaattcaata gcacattgga tcctaacttt gagtgcaatg
1681 gcagaagtgt cgggtctctc accagatgtt attcaagccc actcctgttt ctcattttac
1741 ggtgatgatg agatcgtcag cactgacatc aaccttgatc ccatgaagtt gacacagaaa
1801 ctcagagagt atggcctagt ccctactcga cctgacaaaa ctgagggtcc ccttgtaata
1861 actgaagatc tcaccggcct aacgttcctg cgtaggtcaa ttgcacggga tccagctggg
1921 tggtttggaa aattagacca agactcaatc ctcaggcaat tgtactggac aaggggcccc
1981 aatcatgaga acccatatga gagcatggtc ccccattccc agcgggccac acagcttatg
2041 gcccttctcg gtgaggcttc actgcatggc ccccagtttt acaagaaggt cagcaagatg
2101 gtcattaacg aaatcaaaag tggtggtctg gaattctatg tgcccagaca agaggccatg
2161 ttcagatgga tgagattctc tgacctcagc acatgggagg gcgatcgcaa tcttgctccc
2221 gagggtgtga atgaagatgg cgtcgaatga cgctgctcca tcgaatgatg gtgctgccaa
2281 cctcgtacca gaggccaaca atgaggttat ggcacttgag ccggtggtgg gagcttcaat
2341 cgcagctcct gtcgtcggcc aacaaaacat aattgacccc tggattagag aaaattttgt
2401 tcaagcacca cagggtgagt tcactgtctc gccgaggaac tcgcctggtg agatgctatt
2461 aaatcttgaa ttaggcccag aactcaaccc ttacctaagt cacctgtccc gtatgtataa
2521 tgggtatgct ggtggcatgc aggttcaggt ggtcctagct gggaatgcgt tcacagctgg
2581 gaaaatcatc tttgccgctg tgccaccaca tttccccgtg gaaaacatca gtgcagctca
2641 aataactatg tgcccccatg tgattgttga tgtgagacaa cttgagccag tactcctacc
2701 ccttcctgac ataaggaata ggttctttca ttacaatcag gagaacactc cccggatgag
2761 actagtggct atgctttaca cccccctgag ggccaactct ggtgaagatg tgtttactgt
2821 ctcttgtagg gtcttaaccc gtcctgcccc tgattttgaa tttactttct tggtaccacc
2881 aactgttgaa tcaaagacta agccttttac actacccata ttaactcttg gtgagctatc
2941 taattccaga ttcccagccc caatagatat gttgtacact gatccaaatg agggaattgt
3001 ggtccaacca caaaatggta ggtgcactct tgatggcact ttgcaaggca ccacacaact
3061 ggtccccacc caaatttgtg ctttcagggg cacactaatt ggccaaacat caagatcttc
3121 agactcaacc gactcagccc ctcggaggag ggatcaccca ctccatgttc aattaaagaa
3181 ccttgatggc acgcagtatg accctactga tgaagtgcca gcagtcctcg gtgccattga
3241 tttcaagggg actgtctttg gggtggccag tcagagggac gtgtcaggac aacaggttgg
3301 agcaactcga gcccatgaag tgcacatcaa cacaaccgat cctaggtata caccaaaact
3361 agggtccatt ctcatgcact cagagtcgga cgacttcgtg actggacagc cggtccgctt
3421 cacacccata ggaatgggcg acaacgactg gcatcagtgg gagctgcccg actattctgg
3481 acgcctaacc ctaaacatga accttgcccc agcagttgct cctgcatttc cgggtgagag
3541 gattcttttc ttcaggtcaa ttgtcccgtc tgctggtggc tacggctctg ggcaaataga
3601 ttgcctcata ccacaggagt gggttcagca tttctaccaa gaagctgcac catcccaatc
3661 tgccgtggca ctcatcaggt atgtcaaccc tgacacaggc agaaacatct ttgaggctaa
3721 attgcacagg gaaggcttca tcaccgtggc taattctggc aacaacccca ttgttgtccc
3781 ccctaatggg tattttaggt ttgaggcttg ggtgaatcaa ttttacactt tgacccccat
3841 gggaactggt caggggcgta ggaggaatca ataatggcta gtgcttttct tgcaggtctt
3901 gctggtgacg tcataacaaa tggcgttgga tctctaataa atgctggtgc taatgcagtt
3961 aatcagaaag ttgaatatga ttttaataaa cagcttcaaa tggcatcatt taaacatgat
4021 aaagagatgt tgcaatcaca agtgttggca accaagcagt tgcagcagga gatgatgaac
4081 attaggcagg gggtgttgac cgctggcggc ttctcccccg cggatgctgc tagaggggct
4141 gtcaatgccc caatgacaaa gattctggac tggagcggca ccaggtattg ggcaccaaac
4201 agcatgaaaa ccacaagtta ttcaggacag ttttctagta gccctgttca taagtctcct
4261 gctcctcccc agcatgctgt ttcatcaaag
//