Typing tool
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Typing tool
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Complete norovirus genomes
| MK956197 | GII.6 | |
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| GII.P7 |
ORF1: 1..1617
ORF2: 1598..3241
ORF3: 3241..3720
LOCUS MK956197 3720 bp RNA linear VRL 12-NOV-2019
DEFINITION Norovirus GII isolate G19_007 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION MK956197
VERSION MK956197.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3720)
AUTHORS Strubbia,S., Schaeffer,J., Oude Munnink,B.B., Besnard,A.,
Phan,M.V.T., Nieuwenhuijse,D.F., de Graaf,M., Schapendonk,C.M.E.,
Wacrenier,C., Cotten,M., Koopmans,M.P.G. and Le Guyader,F.S.
TITLE Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and
Related Bioaccumulated Oysters
JOURNAL Front Microbiol 10, 2394 (2019)
PUBMED 31681246
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3720)
AUTHORS Strubbia,S., Schaeffer,J. and Le Guyader,S.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. v3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3720
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G19_007"
/isolation_source="sewage"
/db_xref="taxon:122929"
/country="France: Nantes"
/collection_date="22-Mar-2018"
/note="genotype: GII.6-GII.P7"
gene <1..1617
/gene="ORF1"
CDS <1..1617
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QCT04936.1"
/translation="AGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGP
GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPR
GKPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWN
GESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG
TMIRCARAFGGLMDSMKASCITLPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDS
TQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTS
QWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLRE
YGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPN
HENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..84
/gene="ORF1"
/product="Pro"
mat_peptide 85..1614
/gene="ORF1"
/product="RdRp"
gene 1598..3241
/gene="ORF2"
CDS 1598..3241
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCT04937.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGHAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEGIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLIGQTSRSSDSTDSAPRRRDHPLHVQLKNLDGTQYDPTDEVPAVLG
AIDFKGTVFGVASQRDVSGQQVGATRAHEVHINTTDPRYTPKLGSILMHSESDDFVTG
QPVRFTPIGMGDNDWHQWELPDYSGRLTLNMNLAPAVAPAFPGERILFFRSIVPSAGG
YGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRNQ"
gene 3241..>3720
/gene="ORF3"
CDS 3241..>3720
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCT04938.1"
/translation="MASAFLAGLAGDVITNGVGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPADAARGAVNAPMTKILDWSG
TRYWAPNSMKTTSYSGQFSSSPVHKSPAPPQHAVSSKSRLQNDSASVYSSPSSVSSQS
"
ORIGIN
1 gcgggtgtcc acaccgcagc agcccgggga ggcaacactg tcatatgtgc cactcaaggg
61 caagatgggg aggcagtcct tgagggaaat gagaaccttg gaacttactg cggtgcccca
121 attttgggtc caggcaaggc gcccaaactt agcacaaaga ccaagttctg gcgttcgtca
181 ccagacgctc tgccgccagg cacttatgag cctgcctact tgggaggcaa ggaccctaga
241 gtagaaaagg gaccatccct gcagcaagtc atgagagacc aactaaaacc tttcacagaa
301 cccaggggca agccacctag acccgcagtc ttagaagaag ccaaaaagac agtgatgaat
361 gttctagaac aaaccattga ccctgctaag ccatggacct actcccaagc atgcgcctca
421 ctggacaaga ccacctccag tggtagccct catcatgtca ggaaaaatga ccattggaat
481 ggagaatcct ttactggccc ccttgcagac caagcatcca aagccaacct catgtacgag
541 caggccaaac atgtgcagcc cgtgtacacg gccgcactca aagatgagct agtcaagact
601 gacaagatct ataagaagat aaagaaaagg ctcttatggg ggtcggatct tggtacaatg
661 atcaggtgtg ccagggcctt tggtggtctc atggatagca tgaaggcaag ttgcataacc
721 ctcccatgta gggtgggaat gaacatgaat gaagatggtc ccatcatatt tgacaaacac
781 tctaagtata ggtaccatta tgatgctgac tattccaggt gggactcaac ccagcaaagg
841 agcattctct cggccgctat ggaagtgatg gtgcggttct ctgccgaacc agagctggca
901 caagtggttg cagaggacct cctggcaccc agccaactag atgttggcga ctttgtcatc
961 tcagttcagg agggtctgcc gtcaggggta ccatgtacat cacaatggaa ttcaatagca
1021 cattggatcc taactttgag tgcaatggca gaagtgtcgg gtctctcacc agatgttgtt
1081 caagcccact cctgtttctc attttacggt gatgatgaga tcgtcagcac tgacatcaac
1141 cttgatccca tgaagttgac acagaaactc agagagtatg gcctagtccc tactcgacct
1201 gacaaaactg agggtcccct tgtaataact gaagatctca ccggcctaac gttcctgcgt
1261 aggtcaattg cacgggatcc agctgggtgg tttggaaaat tagaccaaga ctcaatcctc
1321 aggcaattgt actggacaag gggccccaat catgagaacc catatgagag catggtcccc
1381 cattcccagc gggccacaca gcttatggcc cttctcggtg aggcttcact gcatggcccc
1441 cagttttaca agaaggtcag caagatggtc attaacgaaa tcaaaagtgg tggtctggaa
1501 ttctatgtgc ccagacaaga ggccatgttc agatggatga gattctctga cctcagcaca
1561 tgggagggcg atcgcaatct tgctcccgag ggtgtgaatg aagatggcgt cgaatgacgc
1621 tgctccatcg aatgatggtg ctgccaacct cgtaccagag gccaacaatg aggttatggc
1681 acttgagccg gtggtgggag cctcaattgc tgctcctgtc gtcggccaac aaaacataat
1741 tgacccctgg attagagaaa attttgttca ggcaccacag ggtgagttta ctgtttcacc
1801 aaggaactca cctggtgaga tgcttctaaa tcttgaatta ggccctgagc tcaatcctta
1861 tctgagtcac ttgtcccgca tgtacaatgg tcatgctggc ggcatgcagg ttcaggtggt
1921 cctagctggg aatgcgttca cagctgggaa aatcatcttt gccgctgtgc caccacattt
1981 ccccgtggaa aacatcagtg cagctcaaat aactatgtgc ccccatgtga ttgttgatgt
2041 gagacaactt gagccagtac tcctacccct tcctgacata aggaataggt tctttcatta
2101 caatcaggag aacactcccc ggatgagact tgtggctatg ctttacaccc ccctgagggc
2161 caactctggt gaagatgtgt ttactgtctc ttgtagggtc ttaacccgtc ctgcccctga
2221 ttttgaattt actttcttgg taccaccaac tgttgaatca aagactaagc cttttacact
2281 acccatatta actcttggtg agctatctaa ttccagattc ccagccccaa tagatatgtt
2341 gtacactgat ccaaatgagg gaattgtggt ccaaccacaa aatggtaggt gcactcttga
2401 tggcactctg caaggcacca cacaactggt ccccacccaa atttgtgctt tcagaggcac
2461 actaattggc caaacatcaa gatcttcaga ctcaaccgac tcagcccctc ggaggaggga
2521 tcacccactc catgttcaat taaagaacct tgatggcacg cagtatgacc ccactgatga
2581 agtgccagca gtcctcggtg ccattgattt caaggggact gtctttgggg tggccagtca
2641 gagggacgtg tcaggacaac aggtgggagc aactcgagcc catgaagtgc acatcaacac
2701 aaccgatcct aggtatacac caaaactagg gtccattctc atgcactcag agtcggacga
2761 cttcgtgact ggacagccgg tccgcttcac acccatagga atgggcgaca acgactggca
2821 tcagtgggag ctgcccgact attctggacg cctaacccta aacatgaacc ttgccccagc
2881 agttgctcct gcattcccgg gtgagaggat tcttttcttc aggtcaattg tcccgtctgc
2941 tggtggctac ggctctgggc aaatagattg cctcatacca caggagtggg ttcagcattt
3001 ctaccaagaa gctgcaccat cccaatctgc cgtggcactc atcaggtatg tcaaccctga
3061 cacaggcaga aacatctttg aggctaaatt gcacagggaa ggcttcatca ccgtggctaa
3121 ttctggcaac aaccccattg ttgtcccccc taatgggtat tttaggtttg aggcttgggt
3181 gaatcaattt tacactttga cccccatggg aactggtcag gggcgtagga ggaatcaata
3241 atggctagtg cttttcttgc aggtcttgct ggtgacgtca taacaaatgg cgttggatct
3301 ctaataaatg ctggagctaa tgcagttaat cagaaagttg aatatgattt taataaacag
3361 cttcaaatgg catcatttaa acatgataaa gagatgttgc aatcacaagt gctggcaacc
3421 aagcagttgc agcaggagat gatgaacatt aggcaggggg tgttgaccgc tggcggcttc
3481 tcccccgcgg atgctgctag aggggctgtc aatgccccaa tgacaaagat tctggactgg
3541 agcggcacca ggtattgggc accaaacagc atgaaaacca caagttattc aggacagttt
3601 tctagtagcc ctgttcataa gtctcctgct cctccccagc atgctgtttc atcaaagagt
3661 agattgcaaa atgattctgc tagtgtatat agttctcctt cttctgtttc ttcacaatca
//