Typing tool
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Typing tool
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Complete norovirus genomes
| MK956176 | GI.2 | |
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| GI.P2 |
ORF1: 1..2736
ORF2: 2720..4360
ORF3: 4360..4995
LOCUS MK956176 5048 bp RNA linear VRL 12-NOV-2019
DEFINITION Norovirus GI isolate G19-004 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MK956176
VERSION MK956176.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 5048)
AUTHORS Strubbia,S., Schaeffer,J., Oude Munnink,B.B., Besnard,A.,
Phan,M.V.T., Nieuwenhuijse,D.F., de Graaf,M., Schapendonk,C.M.E.,
Wacrenier,C., Cotten,M., Koopmans,M.P.G. and Le Guyader,F.S.
TITLE Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and
Related Bioaccumulated Oysters
JOURNAL Front Microbiol 10, 2394 (2019)
PUBMED 31681246
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5048)
AUTHORS Le Guyader,S., Schaeffer,J., Strubbia,S., Besnard,A., Phan,M.V.,
Cotten,M., Oude Munnink,B.B., Nieuwenhuijse,D.F., De Graaf,M. and
Koopmans,M.
TITLE Direct Submission
JOURNAL Submitted (21-MAY-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. v3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5048
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="G19-004"
/isolation_source="sewage"
/db_xref="taxon:122928"
/country="France: Nantes"
/collection_date="22-Mar-2018"
/note="genotype: GI.2-GI.P2"
gene <1..2736
/gene="ORF1"
CDS <1..2736
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QCT04927.1"
/translation="ITSILQIAGSALVVNRAVKRMFGTRIATLSLEGPPREHKCRVHM
AKAAGKGPIGHDDVVEKYGLCETEEDEEVAHTEIPSATMEGKNKGKNKKGRGRKNNYN
AFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEM
EIRHRVFYKSKSRKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDEREVDYNEK
ISFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLTSIAIHRAGE
FTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGR
LVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKSGNTVVCA
VQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVYEPAYLGG
RDPRVTGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMDTPVPWSY
SDACQSLDKTTSSGFPYHRRKNDDWNGTTFIRELGEQAAHANNMYEQAKSMKPMYTAA
LKDELVKPEKVYQKVKKRLLWGADLGTVVRAARAFGPFCDAIKSHTIKLPIKVGMNSI
EDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQDLL
APSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYF
SFYGDDEIVSTDIEFDPAKLTQVLREYGLKPTRPDKSEGPIIVRKSVDGLVFLRRTIS
RDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKVQLISLLGEASLHGEKF
YRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
mat_peptide <1..252
/gene="ORF1"
/product="p22"
mat_peptide 253..666
/gene="ORF1"
/product="VPg"
mat_peptide 667..1209
/gene="ORF1"
/product="Pro"
mat_peptide 1210..2733
/gene="ORF1"
/product="RdRp"
gene 2720..4360
/gene="ORF2"
CDS 2720..4360
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCT04928.1"
/translation="MMMASKDAPQSADGASGAGQLVPEVNTADPLPMEPVAGPTTAVA
TAGQVNMIDPWIVNNFVQSPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLSQMYNG
WVGNMRVRILLAGNAFSAGKIIVCCVPPGFTSSSLTIAQATLFPHVIADVRTLEPIEM
PLEDVRNVLYHTNDNQPTMRLVCMLYTPLRTGGGSGSSDSFVVAGRVLTAPSSDFSFL
FLVPPTIEQKTRAFTVPNIPLQTLSNSRFPSLIQGMILSPDASQVVQFQNGRCLIDGQ
LLGTTPATSGQLFRVRGKINQGARTLNLTEVDGEPFMAFDSPAPVGFPDFGKCDWHMR
ISKTPNNTSSGDPMRSVSVQTNVQGFVPHLGSIQFDEVFNHPTGDYIGTIEWISQPST
PPGTDINLWEIPDYGSSLSQAANLAPPVFPPGFGEALVYFVSAFPGPNNRSAPNDVPC
LLPQEYITHFVSEQAPTMGDAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNGVGAGPQ
QLPLNGVFLFVSWVSRFYQLKPVGTASTARGRLGVRRI"
gene 4360..4995
/gene="ORF3"
CDS 4360..4995
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCT04929.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRYQQDLALQRN
TFEHDKDMLSYQVQASNALLAKNLNTRYSMLVAGGLSSADASRAVAGAPVTQLIDWNG
TRVAAPRSSATTLRSGGFMAVPMPVQPKSKALQSSGFSNPAYDTSTVSSRTSSWVQSQ
NSLRSVSPFHRQALQTVWVTPPGSTSSSSVSSTPYGVFNTDRMPLFANLRR"
ORIGIN
1 ataacttcta tactacaaat tgctggctca gccctagtgg tcaacagagc agtgaagaga
61 atgtttggca cgcgtattgc caccctgtcc cttgagggcc cccccagaga acacaaatgc
121 agggtccaca tggccaaggc cgcaggaaag gggcctattg gccatgatga tgtggtagaa
181 aagtatgggc tttgtgaaac tgaggaggac gaagaagtgg cccacactga aatcccttct
241 gccaccatgg agggcaagaa taaagggaag aacaagaaag gacgtggtcg gaagaacaac
301 tacaacgcct tctcccgcag gggactcaat gatgaagagt acgaagagta caagaagata
361 cgcgaggaga aaggtggcaa ttatagcata caggagtacc tagaggatag gcaaaggtat
421 gaagaagagc tagcagaggt tcaagcaggt ggagatggag gaatcgggga aactgaaatg
481 gaaatccgcc acagagtgtt ctacaaatct aagagtagaa agcatcacca ggaagagcga
541 cgccagctag ggctggtgac aggttccgac attcggaaga gaaaaccaat cgactggacc
601 ccacccaagt cagcatgggc agatgatgag cgtgaggtgg attacaatga gaagatcagt
661 tttgaggcgc cccccacttt atggagcaga gtgacaaagt ttgggtctgg atggggtttc
721 tgggtcagcc ctacagtctt cataaccaca acgcacgtca taccaaccag tgcgaaggaa
781 ttctttggtg aacccctaac cagcatagcc atccacaggg ctggtgagtt cactctattc
841 aggttctcaa agaaaattag gcctgacctc acaggtatga tccttgagga gggttgcccc
901 gagggcacag tgtgttcagt actaataaaa agggactctg gtgaactact gccattggct
961 gtaagaatgg gcgcaatagc atcaatgcgt atacagggcc gccttgttca tgggcagtcc
1021 ggcatgctgc tcaccggggc taatgctaag ggcatggacc ttggaaccat cccaggagac
1081 tgtggggctc cttatgtcta taagagagcc aacgactggg tggtctgtgg tgtacacgct
1141 gctgccacca aatcaggcaa caccgttgtg tgcgccgttc aggccagtga aggagaaacc
1201 acgcttgaag gcggtgacaa aggacactat gctggacatg aaataattaa gcatggttgt
1261 ggaccagccc tgtcaaccaa aaccaaattc tggaaatcat cccctgaacc actaccccct
1321 ggggtctatg aacccgccta cctcgggggc cgggacccta gggtaactgg cggtccctca
1381 ctccaacagg tgttgcggga ccaattaaag ccatttgctg agccacgagg acgcatgcca
1441 gagccaggtc tcttggaggc cgcagttgag actgtgactt catcattaga gcaggttatg
1501 gacactcccg ttccttggag ctatagtgat gcgtgccagt cccttgacaa gaccactagt
1561 tctggttttc cctaccacag aaggaagaac gacgactgga atggcaccac ctttatcagg
1621 gagttagggg agcaggcagc acacgctaat aacatgtatg aacaggctaa aagtatgaaa
1681 cccatgtaca cggcagcgct caaagatgaa ctagtcaaac cagagaaggt ataccaaaaa
1741 gtgaagaagc gcttgttatg gggggcagac ttgggcacgg tggttcgggc cgcgcgggct
1801 tttggtccat tctgtgatgc tataaaatcc cacacaatca aattgcccat taaagttgga
1861 atgaattcaa ttgaggatgg gccactgatc tatgcagaac attcaaagta taagtaccat
1921 tttgatgcag attatacagc ttgggattca actcaaaata gacaaatcat gacagagtca
1981 ttctcaatca tgtgtcggct aactgcatca cctgaactag cttcagtggt ggctcaagat
2041 ttgcttgcac cctcagagat ggatgttggc gactatgtca taagagtgaa ggaaggcctc
2101 ccatctggtt ttccatgtac atcacaggtt aatagtataa accattggtt aataactctg
2161 tgtgcccttt ctgaagtaac tggtctgtcg ccagatgtca tccagtccat gtcatatttc
2221 tctttctatg gtgatgatga aatagtgtca actgacatag aatttgatcc agcaaaactg
2281 acacaagtcc tcagagagta tggacttaaa cccacccgcc ccgacaaaag cgagggccca
2341 ataattgtga ggaagagtgt ggatggtttg gtctttttgc gtcgcactat ctcccgcgac
2401 gccgcaggat tccaggggcg actggaccgg gcatccattg aaagacaaat ctactggact
2461 agaggaccca accattcaga tccttttgag accctggtgc cacaccaaca aaggaaggtc
2521 caattaatat cattattggg tgaggcctca ctgcatggtg aaaagtttta caggaagatt
2581 tcaagtaaag tcatccagga aattaaaaca gggggccttg aaatgtatgt gccaggatgg
2641 caagccatgt tccgttggat gcggttccat gaccttggtt tgtggacagg agatcgcaat
2701 ctcctgcccg aatttgtaaa tgatgatggc gtctaaggac gcccctcaaa gcgctgatgg
2761 cgcaagcggc gcaggtcaac tggtgccgga ggttaataca gctgacccct tacccatgga
2821 acctgtggct gggccaacaa cagccgtagc cactgctggg caagttaata tgattgatcc
2881 ctggattgtt aataattttg tccagtcacc ccaaggtgag ttcacaatct ctcctaacaa
2941 tacccccggt gatattttgt ttgatttaca attaggtcca catctaaacc ctttcttgtc
3001 acatttgtcc caaatgtaca atggctgggt tgggaacatg agagtcagaa ttctccttgc
3061 tgggaatgca ttctcagctg gaaagattat agtttgttgt gtcccccctg gctttacatc
3121 ttcttctctc accatagctc aggctacatt gtttccccat gtaattgctg atgtgagaac
3181 ccttgagcca atagaaatgc ccctcgagga tgtacgtaat gtcctctatc acaccaatga
3241 taatcaacca acaatgcggc tggtgtgtat gctatacacg ccgctccgca ctggtggggg
3301 gtctggtagt tctgattcct ttgtagtcgc tggcagggtt ctcacagccc ctagcagcga
3361 tttcagtttc ttgttccttg tcccgcctac catagagcag aagactcggg ctttcactgt
3421 gcctaatatc cccttgcaaa ccttgtccaa ttctaggttt ccttccctca tccaggggat
3481 gattctgtcc cccgatgcat ctcaagtggt ccaattccaa aatgggcgtt gccttataga
3541 tggtcaactc ttaggcacta cacctgctac atcaggacag ctgttcagag taagaggaaa
3601 gataaatcag ggagctcgta cacttaacct cacagaggtg gatggtgaac cattcatggc
3661 atttgattcc cctgcacctg tggggttccc cgattttggg aaatgtgatt ggcacatgag
3721 aatcagcaaa accccaaaca acacaagttc aggtgacccc atgcgcagtg tcagcgtgca
3781 aaccaatgtg cagggttttg tgccacacct gggaagtata caatttgatg aagtgtttaa
3841 tcatcccaca ggtgactaca ttggcaccat tgaatggatt tcccagccat ctacaccccc
3901 tggaacagat attaatctgt gggagatccc cgattatggg tcatcccttt cccaagcagc
3961 taatctggcc cccccagtgt tcccccctgg atttggtgag gcccttgtat actttgtttc
4021 tgctttcccg ggccccaata accgctcagc cccgaatgat gtaccctgtc ttctccctca
4081 agagtacata acccactttg tcagtgaaca agccccaacg atgggtgacg cagctttact
4141 gcattatgtc gaccctgata ccaacaggaa ccttggggag ttcaagctat accctggagg
4201 ttacctcacc tgtgtaccaa acggggtagg tgccgggcct caacagctcc ctctcaatgg
4261 tgtttttctc tttgtttctt gggtgtctcg tttttatcag cttaagcctg tgggaacagc
4321 cagtacggca agaggtaggc ttggagtacg ccgtatataa tggcccaagc catcatagga
4381 gcaattgccg cgtcagctgc aggctcagca ttgggtgcgg gcatccaggc tggtgccgag
4441 gctgcgcttc agagtcaaag ataccaacaa gacttagccc tgcaaaggaa tacttttgaa
4501 catgataagg atatgctttc ctaccaggtc caggcaagta atgcactttt ggcaaagaat
4561 ctcaataccc gctattctat gcttgttgca gggggtcttt ctagtgctga tgcttctcgg
4621 gctgttgctg gggcccctgt aacacaattg attgattgga acggcactcg ggttgccgcc
4681 cccagatcaa gtgcaacaac tctgaggtct ggtggtttca tggcagtccc catgcctgtt
4741 caacccaaat ctaaggccct gcaatcctct gggttttcta atcctgctta tgacacgtcc
4801 acagtttctt ctaggacttc ttcttgggtg cagtcacaga attccctgcg aagtgtgtca
4861 ccctttcata ggcaggccct tcaaactgtg tgggttactc cacctgggtc tacttcctct
4921 tcttctgttt cctcaacacc ttatggtgtt tttaatacgg ataggatgcc gctattcgca
4981 aatttgcggc gttaatgttg taatataatg cagcagtggg cactatattc aatttggttt
5041 aattagtg
//