Typing tool
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Typing tool
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Complete norovirus genomes
| MK956174 | GI.1 | |
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| GI.P1 |
ORF1: 1..5119
ORF2: 5103..6695
ORF3: 6695..7173
LOCUS MK956174 7173 bp RNA linear VRL 12-NOV-2019
DEFINITION Norovirus GI isolate G19-002 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION MK956174
VERSION MK956174.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7173)
AUTHORS Strubbia,S., Schaeffer,J., Oude Munnink,B.B., Besnard,A.,
Phan,M.V.T., Nieuwenhuijse,D.F., de Graaf,M., Schapendonk,C.M.E.,
Wacrenier,C., Cotten,M., Koopmans,M.P.G. and Le Guyader,F.S.
TITLE Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and
Related Bioaccumulated Oysters
JOURNAL Front Microbiol 10, 2394 (2019)
PUBMED 31681246
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7173)
AUTHORS Le Guyader,S., Schaeffer,J., Strubbia,S., Besnard,A., Phan,M.V.,
Cotten,M., Oude Munnink,B.B., Nieuwenhuijse,D.F., De Graaf,M. and
Koopmans,M.
TITLE Direct Submission
JOURNAL Submitted (21-MAY-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. v3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7173
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="G19-002"
/isolation_source="sewage"
/db_xref="taxon:122928"
/country="France: Nantes"
/collection_date="22-Feb-2018"
/note="genotype: GI.1-GI.P1"
gene <1..5119
/gene="ORF1"
CDS <1..5119
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="QCT04921.1"
/translation="VQQNLCWTEKPLDQNVKAWDELDHTTKQQILDEHAEWFDAGGLG
PSTLPSNHERHSNDDSGGHQVKWSAKEGVNLGIGGLTTVPGPEWNMCPLPPADQRSTT
PAVEPIIGDMIEFYEGHIYHYAIYIGQGKTVGVHSPQAAFSITRITIQPISAWWRICY
VPQPKQRLTYDQLKELENEPWPYAAVTNNCFEFCCQVMCLDDTWLQRKLISSGRFHHP
TQDWSRDTPEFQQDSKLEMVRDAVLAAINGLVSRPFKDLLGKLKPLNVLNLLSNCDWT
FMGVVEMVVLLLELFGVFWNPPDVSNFIASLLPDFHLQGPEDLARDLVPVVLGGIGLA
IGFTRDKVSKNDENAVDGLRAATQLGQYGLEIFSLLKKYFFGGDQTEKTLKDIESAVI
DMEVLSSTSVTQLVRDKQSARAYMAILDNEEEKARKLSVRNADPHVVSSTNALISRIS
MARAALAKAQAEMTSRMRPVVIMMCGPPGIGKTKAAEHLAKRLANEIRPGGKVGLVPR
EAVDHWDGYHGEEVMLWDDYGMTKIQEDCNKLQAIADSAPLTLNCDRIENKGMQFVSD
AIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPEVEHTRKVSPGDTNALKDCFKPD
FSHMKMELAPQGGFDNQGNTPFGKGTMKPTTINRLLIQAVALTMERQDEFQLQGPTYD
FDTDRVSAFTKMARANGIGLISMASLGKKLRGVSTIEGLKNALLGYKIAKCSIQWQSR
VYIIESDGSNVHIKEDKQALTPSQQAINTASLAITRLKAARAVAYASCFQSAVTTILQ
MAGSALVINRAVKRMFGTRTAAMALEGPEKEHNCRVHKAKEAGKGPIGHDDMIEKFGL
CETEEEESEDQIQMTPNDAIPEGKNKGKTKKGRGRKNNYNAFSRRGLSDEEYEEYKKI
REEKNGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEMEIRHRVFYKSKSRKHQQE
QRRQLGLVTGSDIRKRKPIDWTPPKNEWADDDREVDYNEKINFEAPPTMWSRVTKFGS
GWGFWVSPTVFITTTHVVPTGVKEFFGEPLTNIAIHQAGEFTQFRFSKKIRPDLTGMV
LEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGM
DLGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGNTVVCAVQASEGETALEGGDKGHY
AGHEIVRHGNGPALSTKTKFWRSSPEPLPPGVYEPAYLGGRDPRVQNGPSLQQVLRDQ
LKPFAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPSPWSYADACQSLDKTTSSGFPYH
KRKNDDWNGTTFVRELGDQAAHANNMYENGKHMKPIYTAALKDELVKPEKVYQKIKKR
LLWGADLGTVIRAARAFGPFCDAIKPHVIKLPIKVGMNTIEDGPLIYAEHAKYKNHFD
ADYTAWDSTQNRQIMTESFSIMSRLTASPELAEVVAQDLLAPSEMDVGDYVIRVKEGL
PSGFPCTSQVNSINHWIITLCALSEATGLSPDVVQSMSYFSFYGDDEIVSTDIDFDPA
RLTQILKEYGLRPTRPDKTEGPIQVRKNVDGLVFLRRTISRDAAGFQGRLDRASIERQ
IFWTRGPNHSDPSETLVPHTQRKVQLISLLGEASLHGEKFYRKISSKVIHEIKTGGLE
MYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
mat_peptide <1..943
/gene="ORF1"
/product="p48"
mat_peptide 944..2032
/gene="ORF1"
/product="NTPase"
mat_peptide 2033..2635
/gene="ORF1"
/product="p22"
mat_peptide 2636..3049
/gene="ORF1"
/product="VPg"
mat_peptide 3050..3592
/gene="ORF1"
/product="Pro"
mat_peptide 3593..5116
/gene="ORF1"
/product="RdRp"
gene 5103..6695
/gene="ORF2"
CDS 5103..6695
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCT04922.1"
/translation="MMMASKDATSNVDGASGAGQLVPEVNTSDPLAMDPVAGSSTAVA
TAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNG
WVGNMRVRIMLAGNAFTAGKIIVSCIPPGFGSHNLTIAQSTLFPHVIADVRTLDPIEV
PLEDVRNVLFHNNDRNQQTMRLVCMLYTPLRTGGGTGDSFVVAGRVMTCPSPDFNFLF
LVPPTVEQKTRPFTLPNLPLSSLSNSRAPLPIGSMGISPDNVQSVQFQNGRCTLDGRL
VGTTPVSLSQVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHVNMTQ
FGHSSQTQFDVDTTPETFVPHLGSIQANGIGSGNYIGVLSWISPPSHPSGSQVDLWKI
PNYGSSVTEATHLAPSVFPPGFGEVLVFFMSKMPGPGAYNLPCLLPQEYISHFASEQA
PTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGASSGPQQLPINGVFVFVSWVS
RFYQLKPVGTASSARGRLGLRR"
gene 6695..>7173
/gene="ORF3"
CDS 6695..>7173
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCT04923.1"
/translation="MAQAIIGAIAASTAGSALGAGIQVGGEAALQSQRYQQNLQLQEN
SFKHDKEMIGYQVEASNQLLAKNLATRYSLLRAGGLSSADAARSIAGAPVTRIVDWNG
VRVSAPESSATTLRSGGFMSVPIPYTSKQKQIQSSGISNPNYSPSSISRTTSWVESQ"
ORIGIN
1 agtccaacaa aatttatgtt ggaccgagaa gccgctagac caaaatgtca aggcgtggga
61 cgaattggac cacacaacaa aacaacaaat acttgatgag catgctgaat ggtttgatgc
121 tggtggctta ggcccaagca cacttcctag caaccatgaa cgtcactcaa atgatgacag
181 tggaggccat caagtgaaat ggtcggctaa agagggtgtg aatctcggga taggagggct
241 cacaaccgtt cccgggcccg agtggaacat gtgcccgcta cccccagcgg atcaaaggag
301 tacgacacct gcagtcgagc ccataatagg tgatatgatc gaattttatg aaggtcatat
361 ctaccattat gccatttata tcggccaagg caagacagtg ggtgtccact ctcctcaagc
421 agcattctca ataacaagaa tcactataca acctatatca gcatggtggc ggatatgtta
481 tgtcccacag ccaaaacaga gacttacata tgaccaactc aaagaattgg agaacgaacc
541 atggccatac gctgcagtta ctaataactg ctttgaattc tgctgtcagg tcatgtgtct
601 agacgacact tggctacaaa gaaagctcat ctcctctgga cggttccacc atccaaccca
661 ggattggtct cgggacactc cagagtttca acaagacagc aaacttgaga tggtcagaga
721 tgcagtgctg gccgcgataa atgggctagt gtcgcggccc tttaaggatc tcctaggcaa
781 actcaaacct ttgaatgtgc tcaatttact ttcaaattgt gactggacat ttatgggggt
841 cgtggaaatg gtggtcctcc ttttggagct ctttggggtg ttttggaacc cacctgatgt
901 gtctaacttc atagcttcac tcctaccaga tttccatcta cagggccctg aagatcttgc
961 tagagacctc gtgccagtgg tcctgggtgg tattggtctg gctataggat ttactaggga
1021 caaggtgagt aaaaatgatg aaaatgctgt tgacggactg cgggctgcga ctcagctcgg
1081 acagtacggc ctagaaatat tctcactatt aaagaagtac ttctttggtg gagaccagac
1141 agagaagacc ctaaaagata tagagtcagc tgttattgac atggaagtgc tgtcgtccac
1201 ttcagtgacc caactcgtga gggataagca gtctgcgcgg gcttacatgg ctatcttgga
1261 taatgaagaa gaaaaagcta gaaagctgtc cgttaggaat gctgacccac atgtggtatc
1321 ctccaccaat gctctcatat ctcggatatc aatggccaga gccgccctag ccaaggccca
1381 ggctgagatg actagtagga tgcgtcctgt ggttattatg atgtgtgggc cccctggcat
1441 aggaaaaacc aaagcagcag aacatctggc caaacgattg gccaacgaga tacggcctgg
1501 cggcaaagtt gggctagttc cacgtgaggc agtggatcat tgggatggct atcatggtga
1561 agaggtgatg ttatgggatg actatgggat gaccaaaata caggaggatt gcaacaaact
1621 acaggccata gctgactcgg cccccttgac gctcaattgt gaccgaatag agaacaaagg
1681 gatgcaattc gtatctgatg ccatagtcat aaccaccaat gcccctggcc cagcccccgt
1741 ggactttgtc aacctcggac cagtctgccg gagggtggac tttcttgtgt actgtacggc
1801 accagaggtg gaacacacaa ggaaagttag tccaggcgac actaatgcac taaaggattg
1861 ttttaaacct gatttctctc atatgaaaat ggaactggcc ccccagggtg gttttgataa
1921 ccaagggaac actccatttg gtaagggtac aatgaagcca accaccataa atagattgtt
1981 aatccaggct gtggcattga caatggagag gcaggacgag ttccaactcc aaggtcctac
2041 ttatgacttt gacactgata gggtctctgc atttacaaag atggcccgag ctaatgggat
2101 aggtcttata tccatggcct ccctgggcaa gaaattgcgt ggggtttcca ccattgaagg
2161 cttgaagaat gcccttctag gatacaagat agcaaaatgc agtatacagt ggcagtcaag
2221 ggtgtacatc atagaatcag atggtagcaa tgtacacatc aaggaggaca agcaggctct
2281 aaccccttca cagcaggcaa ttaacacagc ctccctggct atcacacgac tcaaggcggc
2341 tagggccgta gcttacgcct catgttttca atctgccgtc accaccatac tacaaatggc
2401 agggtctgct ctggtcatca atcgggcagt taagcgcatg tttggcaccc gtacggcagc
2461 catggcgcta gaggggccag aaaaggaaca caattgtagg gttcataaag ctaaggaagc
2521 tggaaagggg cctataggac atgatgacat gatagaaaag tttggtctgt gtgagactga
2581 agaggaagaa agtgaagatc aaatccaaat gaccccaaat gatgccattc cagaggggaa
2641 gaacaaaggt aagaccaaga agggccgcgg ccgcaaaaat aattacaatg cattctcccg
2701 acgtgggctg agtgatgagg agtatgagga atacaagaag atcagggaag agaagaatgg
2761 taattacagc atacaagagt atctggagga tcgtcaacgg tacgaggaag aattagcaga
2821 ggttcaagca ggtggtgacg gtggcatagg agagactgag atggagattc gccacagagt
2881 tttctacaaa tccaaaagca gaaaacacca acaagagcag cgacgtcaac ttggcctagt
2941 aactggatcg gacatcagga aacgtaaacc tattgattgg accccaccaa agaatgaatg
3001 ggccgatgat gatagggaag ttgactacaa tgaaaagatc aattttgagg cccccccaac
3061 aatgtggagc cgggtcacaa agtttgggtc agggtggggc ttctgggtca gtccaaccgt
3121 gttcatcacc accacgcatg tggtgccaac tggcgtgaag gaattctttg gcgaacccct
3181 caccaacata gcaatccatc aagcaggcga gttcacacag ttcagatttt ccaaaaagat
3241 acgccctgac ctgacgggca tggtgttgga ggaagggtgc cctgaaggaa cagtctgttc
3301 agtcctaatc aaacgagact cgggcgagct tctccctcta gctgtccgta tgggggctat
3361 tgcctctatg aggatacagg gccgccttgt tcatggccaa tcaggtatgc tactgacagg
3421 agcgaatgca aaaggaatgg accttggaac tataccaggg gactgtggag caccatatgt
3481 ccacaagcgc ggtaatgact gggtcgtgtg tggggtccat gctgcagcca caaaatcagg
3541 taacactgtg gtctgtgctg tgcaggctag tgaaggtgag accgcattag aaggcggaga
3601 caaggggcat tatgcgggcc atgaaattgt aaggcacggg aatggcccag cattgtcaac
3661 taaaacaaag ttctggagat cctccccaga gccattgccc cctggtgttt atgaacctgc
3721 atacctagga ggaagggacc ctcgtgtcca aaatggcccc tccctccaac aggttctgcg
3781 tgaccaattg aaacccttcg cagaaccccg tggtcgcatg cctgagcccg gtttgctgga
3841 ggcagcagtt gaaactgtaa catccatgtt agagcaaaca atggatactc caagcccatg
3901 gtcttatgct gatgcttgtc aatctcttga taaaactaca agttcaggct ttccctatca
3961 caagaggaag aatgatgatt ggaacggcac cacctttgtc agggagcttg gtgaccaggc
4021 cgcacatgct aacaacatgt atgaaaatgg taaacacatg aaacccatct acacagcagc
4081 tttgaaggat gagctagtca aacccgaaaa ggtctaccaa aagatcaaaa agcgcctatt
4141 atggggtgct gaccttggga ctgtaatcag agctgcccga gcttttggcc cattttgtga
4201 cgctataaag ccacatgtca tcaagctacc aataaaggtt ggtatgaaca caatagaaga
4261 tggccccctg atttatgctg agcatgccaa gtacaaaaac cactttgacg cggattatac
4321 ggcatgggat tcaacacaga acagacaaat tatgacagaa tctttctcca ttatgtcacg
4381 ccttacggcc tcccccgagt tggccgaagt tgtggctcaa gatttattgg caccatctga
4441 gatggatgtg ggtgactatg tcataagagt taaggaaggc ttaccatctg ggttcccgtg
4501 tacttcccaa gtgaacagca taaatcattg gataattact ctctgtgcac tttctgaagc
4561 cactggtctg tcacctgatg tggtgcaatc aatgtcatat ttttcatttt atggtgatga
4621 tgagattgtg tcaactgaca tagattttga cccagctcgt ctcacccaaa tccttaagga
4681 atatggcctt agaccaacaa ggccagacaa aactgaaggt ccaatacagg tcaggaaaaa
4741 tgtggatgga ttagttttct tgcgccgcac catctcccgc gacgctgcag ggttccaggg
4801 cagattggac agggcctcaa ttgagcggca gattttctgg acccgcgggc ccaatcattc
4861 agatccttca gagaccttag taccacacac ccaaagaaaa gtgcaattga tctcactatt
4921 gggagaggct tcactccatg gagaaaagtt ctacagaaag atttccagca aagtcataca
4981 tgaaatcaag actggtggat tggagatgta tgttccaggg tggcaggcca tgttccgctg
5041 gatgcgcttc catgacctcg gattgtggac aggagatcgc aatctcctgc ccgaattcgt
5101 aaatgatgat ggcgtctaag gacgctacgt caaacgtgga tggcgccagc ggcgctggtc
5161 agttggtacc ggaggttaat acttctgacc cccttgcaat ggatcctgtg gcgggttctt
5221 cgacagcggt tgcgactgct ggacaagtaa accccattga tccttggata attaataatt
5281 ttgtgcaagc tccccaaggg gagtttacaa tctccccaaa taataccccc ggtgatgttt
5341 tatttgatct gagtttaggt ccccatctta accccttctt gctacatctg tcacaaatgt
5401 ataatggctg ggttggcaat atgagagtca ggattatgct ggccggtaat gctttcactg
5461 caggtaagat catagtctcc tgtatacctc ctggttttgg atcgcataat ctcactatag
5521 cacaatcaac tctgtttcca catgtgattg ctgatgttag gactctagac cctatagaag
5581 tgcctttgga agatgttaga aatgtccttt tccataataa tgataggaat caacaaacca
5641 tgcgccttgt gtgcatgttg tacacccctc tccgcactgg tggcggtaca ggtgattcct
5701 ttgttgtggc ggggcgggtt atgacctgcc ctagtcctga ttttaatttc ttgtttctgg
5761 ttccccccac agtggagcag aaaactagac ctttcaccct tccaaatttg cctttgagct
5821 ctttgtccaa ttcacgtgct cctcttccaa ttggcagcat gggcatctct ccagacaatg
5881 tccagagtgt acagttccaa aatggtcgat gtactttgga cggccgtttg gttggtacca
5941 ccccagtttc actatcccag gttgctaaga taaggggcac ttcaaatggt actgttatca
6001 acctcaccga attggatggt acaccctttc acccttttga gggccctgcc cccattggat
6061 tcccagatct cggtggttgt gattggcacg ttaatatgac acaatttggc cattctagtc
6121 agacacaatt tgatgtggat accacccctg aaaccttcgt ccctcattta ggatcaatcc
6181 aggcaaatgg tattggtagt ggcaattaca ttggtgttct cagttggatc tcccctccat
6241 cacatccctc tggttcccag gtagatcttt ggaagatccc caactatggg tcgagtgtta
6301 ctgaggcaac acacctggcc ccatcagtgt tcccacccgg cttcggggaa gtgctggttt
6361 tcttcatgtc aaagatgcca gggcctggcg cctacaatct gccctgtttg ttgccacaag
6421 agtacatctc acattttgca agtgagcaag cccccactgt gggtgaggct gctctactcc
6481 attatgttga tcctgataca gggcggaacc ttggggagtt caaagcatat cccgatggat
6541 tcctcacttg tgtccccaat ggagccagct cgggtccaca acaattacca atcaatgggg
6601 tttttgtttt tgtctcttgg gtgtctaggt tctatcaatt gaagcctgtg ggaactgcca
6661 gctcggcaag aggtaggctt ggactgcgcc gataatggcc caagctataa ttggtgcaat
6721 tgctgcctcc acagcgggta gtgcccttgg agcaggcata caggttggtg gtgaggcagc
6781 actccaaagt caaagatacc aacagaattt gcaactgcaa gagaattcct tcaaacatga
6841 caaagaaatg attggatatc aggttgaggc ttcaaatcaa ttgctagcca agaatctggc
6901 aaccagatac tcactcctcc gtgctggagg cctatccagt gctgatgcag caaggtccat
6961 agcgggagcc ccagtgaccc gaatcgtgga ctggaacggt gtgagggtgt cagcccctga
7021 gtcttctgca accacattga ggtctggtgg ctttatgtcg gtgccaatac catatacatc
7081 taaacagaaa caaatccaat catctggtat tagtaatcca aattattctc cttcttccat
7141 ctctcgaacc actagttggg ttgaatcaca aaa
//