Typing tool
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Typing tool
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Complete norovirus genomes
| MK907802 | GII.2 | |
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| GII.P16 |
ORF1: 1..2210
ORF2: 2191..3819
ORF3: 3819..4598
LOCUS MK907802 4598 bp RNA linear VRL 02-NOV-2019
DEFINITION Norovirus GII isolate G19_038 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION MK907802
VERSION MK907802.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4598)
AUTHORS Strubbia,S., Phan,M.V., Schaeffer,J., Koopmans,M., Cotten,M. and Le
Guyader,S.
TITLE Optimisation of agnostic metagenomic approaches to characterise
human enteric viruses in sewage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4598)
AUTHORS Le Guyader,S. and Strubbia,S.
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4598
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G19_038"
/isolation_source="sewage"
/db_xref="taxon:122929"
/country="France: Nantes"
/collection_date="11-Dec-2016"
/note="genotype: GII.2-GII.P16"
gene <1..2210
/gene="ORF1"
CDS <1..2210
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="QCO93103.1"
/translation="ERATLGLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFE
APPSIWSRIVSFGSGWGFWVSPSLFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRF
RFPKPIRPDVTGMILEEGAPEGTVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGG
QMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGS
EGEATLEGGDDKGTYCGAPILGPGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDP
RVKGGPSLQQVMRDQLKPFTEPRGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQA
CASLDKTTSSGHPYHVRKNEFWNGETFTGKLADQASKANLMFEEGKHMTPVYTAALKD
ELVKTEKIYGKIKKRLLWGSDLSTMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDG
PIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPS
VVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFY
GDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDP
AGWFGKLDQSSILRQMYWTRGPNHEDPNETMIPHSQRPIQLIVLLGEASLHGPSFYSK
ISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..134
/gene="ORF1"
/product="VPg"
mat_peptide 135..677
/gene="ORF1"
/product="Pro"
mat_peptide 678..2207
/gene="ORF1"
/product="RdRp"
gene 2191..3819
/gene="ORF2"
CDS 2191..3819
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCO93104.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 3819..4598
/gene="ORF3"
CDS 3819..4598
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCO93105.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQYTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTVSSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 aagagagggc cacattaggg ctagtaacag gttcagaaat cagaaaaaga aaccctgatg
61 acttcaaacc caaagggaag ctgtgggccg atgacaacag gagtgttgac tacaatgaga
121 aactggactt tgaggccccc ccaagcatat ggtctaggat tgtgagcttt ggttctggct
181 ggggcttctg ggtgtcacca agccttttca taacgtcaac tcatgtaatc cccgcaggca
241 taacagaagc atttggagtc cccatcaaac aaattcagat ccacaagtca ggtgaatttt
301 gccgattcag attcccaaaa ccaattagac cagatgtgac agggatgatc ttggaagaag
361 gtgcgcctga gggcaccgtg gcaactgtgc tcatcaaacg ccccaccgga gagctcatgc
421 ctcttgcagc cagaatggga acacacgcaa ccatgaaaat tcaaggccgc atggttggcg
481 gacagatggg tatgttgctc actggatcaa atgctaaagg aatggatttg ggaacaactc
541 ctggtgactg tggctgtcct tacatctaca aaaggggcaa tgactatata gtcattgggg
601 tgcacactgc agcagcccgt ggtggaaaca ccgtcatctg cgccacacag ggaagtgagg
661 gtgaggcgac tcttgagggt ggagatgaca aaggaacata ctgtggggca cccattctag
721 gccctggggg tgcaccaaaa ttgagcacca aaaccaaatt ttggaggtca tcgaacacgc
781 cccttccacc agggacatat gaacctgcct acctcggtgg ccgtgatccg cgtgttaagg
841 gtgggccctc cctgcagcag gtaatgagag accagttgaa gccattcact gaacccaggg
901 gcaaacctcc aagaccaagt gtattggaag cagccaaaca aaccatcatc aatgtcctcg
961 aacaaaccct ggaccctcca caaaaatgga catacgcaca ggcgtgtgcc tcacttgaca
1021 aaaccacctc cagcgggcat ccctatcacg tccgaaagaa tgaattctgg aatggtgaga
1081 ccttcactgg taaattggca gaccaagcat caaaagcaaa cctaatgttt gaggaaggga
1141 aacacatgac accagtgtac acagcagcac tcaaggacga gctagtcaag actgagaaaa
1201 tctatggaaa gatcaagaag agactgctct ggggctctga cttgtccacc atgatccggt
1261 gcgctaggtc atttggtggg ctcatggacg agatgaaggc acactgcata tcactcccag
1321 tccgagttgg catgaatatg aatgaagatg gcccaataat atttgagaaa cattccagat
1381 acaaatatca ctatgatgca gactactctc gttgggattc aacacaacag agggcagtac
1441 tagcagcagc cttggaaatt atggtcagat tctctgcaga accacaattg gcacaaatag
1501 tcgctgagga tctgctggcc cctagtgtag tagatgtagg agactttaaa attacaataa
1561 atgaagggct cccctctggt gtgccatgca cttctcaatg gaactccatc gcacactggc
1621 tgctaactct ctgtgccttg tctgaagtca ccaaactgtc ccctgacatt atacaggcaa
1681 attccatgtt ctcattttac ggtgatgacg agattgtcag caccgacata aaattggacc
1741 ctgaacagtt aaccgccaaa ttgaaggagt acggcctgaa accaacccgc ccagacaaaa
1801 ccgagggacc cctgattatc agtgaagatt tgaacggact cactttcctc cgaaggacag
1861 tgactcgtga cccagctggc tggtttggaa aactggacca aagctcaatt ttgaggcaga
1921 tgtactggac tagaggacca aatcatgaag accccaatga gacaatgata ccccattctc
1981 aaagacccat acagctcatt gtactgcttg gtgaagcctc tcttcacgga ccctctttct
2041 acagtaaaat cagtaaattg gtcataactg aactcaaaga aggtgggatg gacttttacg
2101 tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc acgtgggagg
2161 gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga cgccgctcca
2221 tctactgatg gtgcagccgg cctcgtgcca gaaagtaaca atgaggtcat ggctcttgaa
2281 cccgtggctg gtgccgcctt ggcagccccg gtcactggtc aaacaaatat tatagaccct
2341 tggattagag caaattttgt ccaggccccc aatggtgaat ttacagtctc tccccgtaat
2401 gcccctggtg aagtgctact gaatctagag ttgggtccag aattaaatcc ttatctggca
2461 catttagcaa gaatgtacaa tgggtatgcc ggtgggatgg aggtgcaggt catgttggct
2521 gggaacgcgt tcacagccgg caagttggtc ttcgccgccg tgccacctca cttcccagtt
2581 gaaaacctta gcccacagca aatcaccatg ttccctcatg tgatcataga tgtgagaacc
2641 ttggaacctg tcctgttacc actccctgat gttaggaata atttctttca ttataatcag
2701 aaagatgatc ccaagatgag aattgtggct atgctttata cccccctcag gtctaatggt
2761 tcaggtgatg atgtgtttac agtctcctgc agagtgttga ctagaccttc ccctgacttt
2821 gacttcacat acctggtgcc accaacagtg gagtctaaaa caaaaccatt caccctccca
2881 atcctcacac ttggggaact ttccaattcc aggttcccag tgtccataga ccagatgtat
2941 accagcccta atgaagttat atcagtgcag tgtcaaaatg gtaggtgcac actggacggg
3001 gagctccagg ggacaacaca actccaagtc agtggcattt gtgctttcaa aggtgaagtg
3061 accgcccact tgcatgacaa tgatcaccta tataatgtca ccatcacaaa cttgaatggg
3121 tccccttttg atccctccga ggacatccct gcccctctgg gtgtgcctga cttccaggga
3181 agggtttttg gtatcatctc ccaaagggac aaacacaata gtcctgggca taatgaacca
3241 gcaaacaggg gacacgacgc tgtggtcccc acttacacag cacagtacac tccaaaactg
3301 ggacaaattc aaattggcac atggcagact gacgacctta cagtcaacca accagtcaaa
3361 ttcaccccag ttggactcaa tgacactgaa cattttaacc aatgggtggt ccccaggtat
3421 gctggtgccc taaacctcaa tacaaacctt gccccttctg ttgctccagt gtttccagga
3481 gagcgcctgc tcttcttcag atcatacatt cccctcaagg gcggttatgg aaacccagcc
3541 attgattgcc tactaccaca agagtgggtg caacacttct atcaggaagc agccccttca
3601 atgagtgagg tggccctcgt cagatacatc aacccggaca ctggtcgggc actgtttgag
3661 gccaagctcc acagagctgg tttcatgaca gtctcgagca acaccagtgc cccggtggtt
3721 gtgcctgcca acggatactt cagatttgat tcttgggtga accaattcta ttctctcgcc
3781 cccatgggaa ctgggaatgg gcgtagaagg gttcaataat ggctggagct tttgtagctg
3841 gtcttgcagg ggacgtgctc agcaatgggc ttagttcatt gatcaatgca ggtgctaatg
3901 caataaatca gagggcagaa tttgatttta atcagaaatt gcagcaaaat tcttttaatc
3961 atgataagga gatgttgcag gctcagattc aggcaactaa gcagctgcag gcagacatga
4021 tggctataaa acaaggggtc ttgaccgctg gcggcttttc ccctgctgat gcagccagag
4081 gtgctgtgaa cgcgcccatg acacaagcgc tggattggaa tggtacaagg tattgggcac
4141 caaactccat gaggaccaca tcttattctg gaaaattcac atcaaccgcc ccagtgaggc
4201 aggccgactt ccagtacacc caaagccggc cttcgagtgg ctcctctgtg tcttcctttg
4261 ccactcagtc ttcaaggcca actctgacca caaccactgg ttcctcacat ggcacagtct
4321 catcaaattc aactcgcagc acaagcctct cccaatcaac ggtctccaga gctacatcta
4381 ggactggtga gtgggttaga gatcaaaata gaaatttgga accctacatg catggtgcct
4441 tacagacagc ctttgtcacc ccaccttcca gcagggcatc tgacgggaca gtctcaaccg
4501 tcccgaaagg tgttttggac tcctggacac ctgcgtttaa cacccgcagg cagccgcttt
4561 ttgcacacct ccgtaagagg ggggagtcac aagcttag
//