Typing tool
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Typing tool
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Complete norovirus genomes
| MK907798 | GII.3 | |
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| GII.P21 |
ORF1: 1..5099
ORF2: 5080..6726
ORF3: 6726..7480
LOCUS MK907798 7480 bp RNA linear VRL 02-NOV-2019
DEFINITION Norovirus GII isolate G19_034 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION MK907798
VERSION MK907798.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7480)
AUTHORS Strubbia,S., Phan,M.V., Schaeffer,J., Koopmans,M., Cotten,M. and Le
Guyader,S.
TITLE Optimisation of agnostic metagenomic approaches to characterise
human enteric viruses in sewage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7480)
AUTHORS Le Guyader,S. and Strubbia,S.
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7480
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G19_034"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="France: Nantes"
/collection_date="10-Jan-2008"
/note="genotype: GII.3-GII.P21"
gene <1..5099
/gene="ORF1"
CDS <1..5099
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="QCO93092.1"
/translation="KMASNDASAAAAANSNNDNAKSSSDGVLSNMAVTFKRALGARSK
QPPPRDKPPKPPRPPTPELVKAIPPPPPNGEDEPIISYNVKGGVSGLPELSTVTQLEE
SSTAFSVPPLSQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISL
AKVELTPLSLYWRPVYTPQYLISPDTLRKLHGETFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKVKKVANVVLCALSSLFTRPIKDIIGKL
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEKNELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDMEEEKARKLSTK
SASPDIVGTINALLSRIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELA
KKIASSLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEKA
KRDFPGQPDMWKDTFKPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTASSLVARAS
GLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLVDTMRVGSQLKNVKTMT
ELKQALKNISVKKCQLVYGGGTYTLESDGKGNVHVEKVNNTSVQTNNELSGALHHLRC
ARIRYYVKCVQEALYSILQIAGAAFITTRIAKRMNIQNLWSKPQAEDPEETNNEDGCP
KPKNDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGR
YSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVT
GSEVRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPS
LFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGT
VATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGNEGEAMLEGGDNKGTYCGAPILGP
GNAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGHPYHMRKNDCWN
GETFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGTIKKRLLWGSDLS
TMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTTKLKE
YGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTKGPN
HEDPFETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..989
/gene="ORF1"
/product="p48"
mat_peptide 990..2087
/gene="ORF1"
/product="NTPase"
mat_peptide 2088..2624
/gene="ORF1"
/product="p22"
mat_peptide 2625..3023
/gene="ORF1"
/product="VPg"
mat_peptide 3024..3566
/gene="ORF1"
/product="Pro"
mat_peptide 3567..5096
/gene="ORF1"
/product="RdRp"
gene 5080..6726
/gene="ORF2"
CDS 5080..6726
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCO93093.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICALRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESDDFDQNKP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYINPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6726..>7480
/gene="ORF3"
CDS 6726..>7480
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCO93091.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDREMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTNQTVHRSTPNFKTNQAPKSTPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSMPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGES"
ORIGIN
1 tgaagatggc gtctaacgac gcttccgctg ccgctgctgc caatagcaac aacgacaacg
61 caaaatcttc aagtgacgga gtattatcta atatggctgt cacttttaaa cgagccctcg
121 gggcgcggtc taaacagccg cccccgaggg acaaaccacc aaaaccccca agaccaccca
181 caccagagtt ggttaaggca atcccccctc ccccacccaa cggggaggac gaaccaatca
241 tttcttacaa cgtcaaaggg ggtgtttctg gtttgcctga actctcaact gtcacccaac
301 tggaagagag ctctacagca ttcagcgttc cccctcttag tcagagggag aacagagatg
361 caaaggaacc attgactgga accatcctgg agatgtggga cggggagatc taccattatg
421 gcttatacgt ggaacgaggg ttagtgctcg gtgtacacaa accaccagca gccatcagcc
481 ttgctaaggt tgagctgacc cccttgtctt tgtattggag accagtgtac accccacagt
541 acctcatttc ccctgacact ctcagaaagt tgcatgggga gacgttccct tatacagcct
601 ttgacaacaa ctgttatgcc ttctgctgtt gggtacttga cctgaacgat tcatggctga
661 gcagaaggat gatacagagg acaacaggct tcttccgacc ctaccaggac tggaacagga
721 aacccctccc cacgatggat gactccaaag tgaaaaaggt ggccaatgtt gtcctctgtg
781 ctctctcatc attgtttaca agaccaatta aggacattat tgggaagttg aaacccctaa
841 acattctcaa catcctagcc acatgtgatt ggacttttgc aggcatagta gaatccctga
901 tccttttggc tgaactgttt ggagttttct ggacaccccc agatgtgtct gcaatgatcg
961 ctcccttact gggtgattat gaactacagg gacccgagga cctcgctgtg gaactcgtac
1021 ccgtagtaat gggagggata ggtttggtgc tgggattcac caaagagaaa atcggcaaaa
1081 tgctttcatc tgctgcttca accctgaggg catgcaaaga tctcggtgca tatgggttgg
1141 agatcctcaa attggttatg aaatggtttt tcccaaagaa agaagagaaa aacgaattgg
1201 caatggtgag atccatcgag gatgcagtgc tagatcttga ggccattgag aacaaccata
1261 tgacagctct actcaaggat aaagacagcc ttgcaaccta catgaggact cttgacatgg
1321 aggaggagaa ggcgaggaaa ctttccacca agtcggcctc gccggatatt gtgggcacga
1381 taaacgccct actgtcaagg attgcagctg cccggtctct agtgcacagg gctaaggagg
1441 agctgtcaag caggccccga ccggtcgttg taatgatttc agggagaccg ggtataggga
1501 aaacccatct agctagagag ttggcaaaga agatcgcctc ctcactcaca ggtgaccaga
1561 gggtgggtct tatcccacgt aacggggtcg accactggga tgcatacaaa ggcgaaagag
1621 tcgttctctg ggacgactac gggatgagca accctatcca cgacgccctc agactccagg
1681 agctcgctga tacctgtcct cttacactca actgtgacag gattgagaac aaaggcaaag
1741 tctttgacag tgacgccata ataataacca ccaatttggc caacccagcg ccactggatt
1801 acgtcaactt tgaagcttgc tcaagacgca tagacttcct cgtctatgct gatgcccctg
1861 aagttgagaa ggctaaacgg gacttcccag gccaaccaga catgtggaaa gacaccttta
1921 aacccgactt ctcacatata aaactgacat tagccccgca aggaggtttt gacaagaatg
1981 gtaacactcc tcatgggaag ggtgtcatga agaccctcac tgccagttcc ctcgttgccc
2041 gagcatcagg gctcctccac gagagattag acgaatatga gctgcagggc ccaactccca
2101 caacattcaa cttcgaccgc aacaaggtgc ttgcttttag gcagcttgct gctgaaaaca
2161 agtacggtct tgttgacaca atgagggtcg ggtcacagct caagaatgtc aaaactatga
2221 cagaactcaa gcaggccctc aagaacatct cagtcaagaa atgtcagctt gtgtatggtg
2281 ggggcacgta cacacttgaa tctgatggca aaggcaatgt gcatgtcgaa aaggtgaaca
2341 acaccagtgt gcaaactaac aacgagctct ccggggcttt gcaccatctc aggtgtgcca
2401 gaatcaggta ctatgttaag tgtgtccagg aagctctcta ctccatcttg caaattgccg
2461 gggctgcatt cattaccacg cgcattgcaa agcgcatgaa catacaaaac ctctggtcca
2521 aaccacaagc agaagatccg gaggagacta acaacgagga tggttgtcca aaacctaaaa
2581 atgatgagga gtttgtcatc tcctctgatg acatcaaaac cgagggtaag aaaggaaaga
2641 acaagactgg ccgtggtaag aagcacacag ccttttccag caaaggactc agtgatgagg
2701 agtacgatga gtataagaga attagggaag agagaaatgg caggtactcc atagaggaat
2761 acctacagga cagagacaaa tactatgagg aggtggccat agccagggca actgaggaag
2821 acttctgcga agaagaggag gctaaaatcc ggcaaaggat attcagacca acaaggaaac
2881 aacgcaaaga ggaaagagcc tctcttggtt tggttacagg ttctgaggtc aggaagagaa
2941 acccagatga cttcaagccc aaagggaaac tatgggccga tgatgacagg agtgttgact
3001 acaatgagaa acttagtttc gaggctccac caagcatttg gtcacgaata gtcaactttg
3061 gctcagggtg gggcttttgg gtctcgccca gcctcttcat aacatcaacc catgtcattc
3121 cccaaggcgc acaggagttc tttggagtgc ccatcaaaca aatacaaatt cacaagtcag
3181 gtgagttctg ccggcttagg ttcccaaaac caatcaggac agatgtcaca ggcatgatct
3241 tggaggaagg tgctccagaa ggcactgttg ccacacttct catcaagaga ccaactgggg
3301 aactcatgcc cttggcagcc agaatgggca cccacgcgac catgaaaatt cagggtcgca
3361 ctgttggtgg acagatgggc atgctactca cagggtctaa cgctaagagt atggatttgg
3421 gcacaactcc tggcgattgt ggttgtccct atatctacaa gagagggaac gactacgtgg
3481 tcattggagt tcacactgcc gccgctcgtg gaggaaacac cgtcatctgt gcaacccaag
3541 gaaacgaggg tgaggccatg ctagaaggtg gtgacaacaa gggaacttat tgtggagcac
3601 caatattagg ccctggaaat gcccccaaac tcagcaccaa aaccaaattc tggaggtctt
3661 ccaccacccc cctgccaccc ggaacctatg agccagctta tctgggtggc aaggacccta
3721 gagtgaaagg tggcccctca ctgcaacagg ttatgaggga ccaactaaaa ccattcactg
3781 agcccagagg caaaccaccc aaaccaagtg tgctagaagc cgccaagaag actataatca
3841 atgtgcttga acaaacaata gacccacctc aaaaatggac atacgcacaa gcgtgtgcat
3901 cactagacaa gaccacttcc agtggccacc cttaccacat gcggaagaac gattgctgga
3961 atggggaaac tttcacagga aaactggcag accaagcatc aaaggctaac ctaatgtttg
4021 aggaaggaaa gaacatgacc ccagtataca caggagctct gaaagatgag ctagtcaaga
4081 ctgataagat ctatgggaca atcaagaaga gactcctgtg gggttcagac ctatcaacca
4141 tgatacggtg tgcacgagcc ttcggtgggc taatggacga gctcaaggcc cattgcgtca
4201 cactaccagt cagggttggt atgaacatga atgaggatgg acccataata tttgagaaac
4261 attccagata caaataccat tatgatgcag attactcccg ctgggactca acacaacaaa
4321 gagcagtgct ggctgcagcc ctggaaataa tggtcaaatt ctcaccagaa ccccatctgg
4381 cccaagtagt tgcagaagac ctcttgtccc ccagtgtgat ggatgtgggt gatttcaaga
4441 tatcaatcaa cgagggatta ccctctggtg ttccttgcac ctcacaatgg aactccattg
4501 cccactggct cctcacacta tgtgcactgt ctgaagtcac agacctgtcc cctgacatca
4561 tccaggcgaa ttccctgttc tccttttatg gtgatgatga aatagtgagc acagacatca
4621 aactggaccc agagaaattg acaacaaaat tgaaggaata cgggctcaaa ccaacccgtc
4681 ctgataaaac agaaggaccc ttaattatct ctgaagattt ggatggcctg accttcttac
4741 ggagaacagt gacccgtgat ccggccgggt ggtttggcaa actggaccaa agttcaatac
4801 tcaggcagat gtactggacc aagggaccaa accatgagga cccctttgaa acaatgatac
4861 cacactccca aagacccata caactgatgt cattactggg tgaagctgca ttgcatggtc
4921 catcgttcta cagtaaaatc agcaaattgg tcatctcaga attgaaagag ggtggaatgg
4981 atttttacgt gcccagacaa gaaccaatgt tcaggtggat gagattctca gatttgagca
5041 cgtgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc gtcgaatgac
5101 gccgctccat ctaatgatgg tgccgccggc ctcgtcccag agatcaataa tgaggcaatg
5161 gcgctagagc cagtggcggg tgcagcgata gcagcacccc tcactggtca gcaaaatata
5221 attgatccct ggattatgaa taattttgtg caagcacctg gtggtgagtt tacagtatcc
5281 cctagaaatt cccctggtga agttcttctt aatttggaat tgggcccaga aataaatccc
5341 tatttggccc atcttgctag aatgtataat ggttatgcag gtggatttga agtgcaggtg
5401 gtcctagctg gaaatgcgtt tacagcagga aagataatct ttgcagctat tccccccaat
5461 tttccaattg acaatctaag tgcagcacag attacaatgt gcccacatgt gattgtggat
5521 gtcagacagt tggaaccagt caacctcccg atgcctgacg ttcgtaacaa cttctttcat
5581 tacaatcaag ggtccgattc gagattgcgc ctaattgcaa tgctatacac acctcttagg
5641 gcaaataatt ctggggatga tgtttttact gtgtcttgca gagtgctaac tagacctagt
5701 cctgacttct catttaattt ccttgtgcca cctactgtgg agtcaaagac aaaacccttt
5761 tccctcccta ttctgactat ctctgaaatg tccaattcta ggttcccagt accaattgat
5821 tctctgcaca ccagtcctac tgagaatatt gttgtccagt gccagaatgg gcgcgtcacc
5881 cttgatggtg agttgatggg caccactcaa ctcttaccta gccaaatctg tgctctcagg
5941 ggcgttctca ccagatcaac aagcagggcc agtgaccagg ccgatacagc aacccctaga
6001 ttgtttaatt attattggca catacaattg gataatctaa atggaactcc ttatgatcct
6061 gcagaagaca taccaggccc cctagggaca ccagatttcc ggggcaaagt ctttggcgtg
6121 gccagccaga gaaatcctga tgccacgact agggcacatg aagcaaagat agacacaaca
6181 tctggccgtt tcactccaaa gctaggctca ttagagatat ccactgaatc tgatgatttt
6241 gatcaaaaca aaccaacaag attcacccca gttggcattg gggttgacca tgaggcagac
6301 ttccaacaat ggactctacc cgactacgct ggccagttca cccacaacat gaacttagcc
6361 ccagctgttg ctcccaactt ccctggtgag cagctccttt tcttccgctc acagttgcca
6421 tcttctggtg ggcgatccaa cgggattcta gactgcctgg tcccccaaga atgggtacag
6481 cacttctacc aagaatcagc cccctctcaa tctcaagtgg ccctggttag gtatatcaac
6541 cctgacactg gtagagtgtt atttgaggcc aagctgcaca aattaggttt catgactata
6601 gccaagaatg gtgactctcc aataacagtc cctccaaatg gatactttag gtttgaatct
6661 tgggtgaacc ccttttacac acttgccccc atgggaactg ggaatgggcg tagaaggatt
6721 caataatggc tggagctttt atagcaggat tggctggtga catgctcaca aatactgtag
6781 gatctttagt taatgcaggg gctaatgcca ttaatcaaac aattgatttt gaaaataata
6841 aatatttgca aaatgcttct ttcaatcatg atagggagat gttgaatgca caaattgagg
6901 caacaaagag gttacaggct gacatgattg ctatcaaaca aggggttttg accgctggcg
6961 gcttctcccc tactgatgca gcccgtgggg caattaatgc ccccatgaca aaagtcctag
7021 attggaatgg aacgagatac tgggcaccag gtgccacctc cacaacctcg atgtcgggtg
7081 gctttacaaa tcaaactgtg cacagatcca caccaaattt taaaacgaac caggctccca
7141 aatccacacc cagcagtggg tcttcagtga ggtcaaattc aacccaaatc actagcctga
7201 gctcacactc gtccgggtcg tctcgatcca gcgggtctac agttgtcagc tcaatgccat
7261 cctctaacag gactagggac tgggtcaacc aacaaaattt taatttggaa ccacacatgc
7321 ctggatctct taggacagct tttgtcactc caccatctag tacagcctct agctcaggca
7381 cagtctcaac tgtgcccaaa aatgttttgg actcctggac atctgcgttt aacacgcgca
7441 gacagccgct attcgcacac cttcgcagaa ggggggagtc
//