Typing tool
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Typing tool
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Complete norovirus genomes
| MK907793 | GII.17 | |
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| GII.P17 |
ORF1: 1..698
ORF2: 679..2301
ORF3: 2301..3080
LOCUS MK907793 3126 bp RNA linear VRL 02-NOV-2019
DEFINITION Norovirus GII isolate G19_027 nonstructural polyprotein, RdRp
region, (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION MK907793
VERSION MK907793.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3126)
AUTHORS Strubbia,S., Phan,M.V., Schaeffer,J., Koopmans,M., Cotten,M. and Le
Guyader,S.
TITLE Optimisation of agnostic metagenomic approaches to characterise
human enteric viruses in sewage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3126)
AUTHORS Le Guyader,S. and Strubbia,S.
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3126
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G19_027"
/isolation_source="sewage"
/db_xref="taxon:122929"
/country="France: Nantes"
/collection_date="20-May-2014"
/note="genotype: GII.17-GII.P17"
gene <1..698
/gene="ORF1"
CDS <1..698
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="QCO93078.1"
/translation="LSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSE
VTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVI
SEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQ
LMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDR
NLAPSFVNEDGVE"
mat_peptide <1..695
/gene="ORF1"
/product="RdRp"
gene 679..2301
/gene="ORF2"
CDS 679..2301
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCO93079.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 2301..3080
/gene="ORF3"
CDS 2301..3080
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCO93080.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKVDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSTYTQST
HLTSGSSSNASSASTKLINLSSGSPQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 tgctgtcacc aagtgtggtt gatgtgggcg atttcaaaat cgctatcaat gaaggcctac
61 catctggcgt gccttgcacc tcacaatgga attctattgc ccactggtta cttaccttgt
121 gtgccctttc tgaagtgaca ggattaggtc ctgacatcat acaagctaac tccatgtact
181 ctttctatgg tgatgatgag attgtgagca cagacataaa attggaccca gagaaattga
241 ccgcaaagct caaagaatat ggcctcaaac ccactcggcc cgacaaaact gaggggccgt
301 tggtgattag tgaggacctg aatgggttga ctttcctccg ccgaacagtc acccgtgatc
361 cagcaggttg gtttggaaag ttggaccaaa actccatcct caggcagttg tactggacaa
421 gaggacccaa ccatgaagac cccagtgaga ccatgatacc acacgcacaa agacctgtgc
481 agctcatggc actactagga gaatcctccc tacatggacc ctcattttac agcaaggtta
541 gcaaattagt catatctgaa cttaaagagg gaggaatgga tttttatgtg cccagacaag
601 agtcaatgtt cagatggatg aggttctcag atctaagcac atgggagggc gatcgcaatc
661 tggctcccag ttttgtgaat gaagatggcg tcgaatgacg ccgctccatc taatgatggt
721 gctgctggtc tcgtaccaga gggcaacaac gagacccttc ccctagaacc agttgcgggc
781 gcagctatag ccgcacccgt cactggccaa aataacataa ttgacccctg gattagaaca
841 aattttgtgc aagcaccaaa tggagagttt acagtgtcac ccagaaactc tcctggagaa
901 attttattaa acttagagtt gggccctgat ttgaaccctt atttggctca tttgtcaagg
961 atgtacaatg ggtatgctgg tggagtggaa gttcaggttc tcctggcagg gaacgcgttc
1021 actgccggaa agatcctctt cgccgccgtc ccgccaaatt ttccagtgga attcttaagc
1081 ccagcccaga tcacaatgct ccctcattta atagtagatg tcaggactct tgaaccaatt
1141 atgatcccac ttcctgatgt taggaataca ttcttccatt atagtaacca gcctaacagc
1201 cgcatgagat tagtggctat gctctatacc ccactcaggt ctaatggctc aggtgatgat
1261 gtctttactg tctcttgcag ggttttgact aggcctactc ctgattttga gttcacttat
1321 ttagtgccac cttctgttga atctaaaact aagccttttt ctttacctat tttaaccctt
1381 tctgagctca caaattcgag gttcccagtc cccatcgatt cgcttttcac cgcccagaat
1441 aatgtgttgc aggtgcagtg tcaaaatggc aggtgtacac ttgatggtga gttacaaggc
1501 acaacccagt tgctcccatc tggcatctgt gcattcagag gacgggtgac agcacaaatt
1561 aaccaacgtg acaggtggca catgcaactg caaaacctca atggtacaac atatgaccca
1621 actgatgatg tgccagcccc gctgggtaca cctgacttta agggcgtcgt gtttgggatg
1681 gtaagccaaa gaaatgtggg taatgatgcg cccggctcaa ccagagccca acaggcgtgg
1741 gtttcaacct atagccccca atttgtcccc aaattaggtt ctgtcaatct tagaattagt
1801 gataatgatg atttccaatt ccagccgaca aaattcacac cagtgggcgt caatgatgac
1861 gatgatggtc acccgttcag acaatgggaa ttaccaaact attcagggga gcttaccttg
1921 aatatgaatc ttgccccccc agttgctcca aattttcctg gtgaacaatt gttattcttc
1981 agatctttcg tgccatgctc aggaggctac aaccaaggta ttatagattg tcttattccc
2041 caagaatgga tccaacactt ctatcaggaa tcagcaccct cccagtcaga tgtggcccta
2101 atcaggtatg tcaaccccga tacgggacgt acactgtttg aagcaaaatt gcacagatct
2161 ggttacatta ctgtggctca ctctggagac tatcctcttg ttgttccggc taatggacac
2221 tttagatttg attcttgggt aaatcagttt tactcactcg ccccaatggg aactgggaat
2281 gggcgaagga gggctcagta atggctgggg ctttcattgc aggattggca ggcgacatgc
2341 tcacgtcatc tgtgggctcc cttgtgaacg caggggcaaa cgccatcaac caaaaggtgg
2401 actttgaaaa caacaaacaa ctccagtctg cttcctttca gcatgataaa gagatgctcc
2461 aagcgcaggt gaaggcaacc aagcagctgc aatctgaaat gatagcccta aaacaggggg
2521 ttttggccgc aggcggcttt tcccccactg atgcagcaag gggagccatt ggtgcaccca
2581 tgacaaaggt gcttgactgg tctggcactc gatactgggc gcccaactcc acaaagacaa
2641 ctggttattc gggacaattc acctcttcac ctgtgcacat gtctagtcca aatgctccac
2701 aatcaaaacc tgcaaagcct agatctctag ctccttcctc ttcttctagc agtgtctata
2761 gcacgtatac tcaatctact catttaacgt ctggctcttc tagtaatgct tcttctgcct
2821 ctacaaaatt gataaactta agctctggct cccctcaaaa cagaacagca gagtgggtaa
2881 atcaacagag aagtcttagc cctttcatga gtggcgcact taacatctca catgtcacgc
2941 caccctcaag tagggcttcc agttctggga cggtctcgac cgtgcccaag gaagttttgg
3001 actcctggac gtctgcgttt aacacacaca gacagccgct cttcgcacac ctcagagtga
3061 ggggggagtc acgtgtttag tgaaaagaaa taattggcta taatgtgatt tctttctaaa
3121 tttggc
//