Typing tool
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Typing tool
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Complete norovirus genomes
| MK907789 | GII.6 | |
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| GII.P7 |
ORF1: 1..5059
ORF2: 5040..6683
ORF3: 6683..7431
LOCUS MK907789 7431 bp RNA linear VRL 02-NOV-2019
DEFINITION Norovirus GII isolate G19_019 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION MK907789
VERSION MK907789.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7431)
AUTHORS Strubbia,S., Phan,M.V., Schaeffer,J., Koopmans,M., Cotten,M. and Le
Guyader,S.
TITLE Optimisation of agnostic metagenomic approaches to characterise
human enteric viruses in sewage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7431)
AUTHORS Le Guyader,S. and Strubbia,S.
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7431
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G19_019"
/isolation_source="sewage"
/db_xref="taxon:122929"
/country="France: Nantes"
/collection_date="30-Mar-2014"
/note="genotype: GII.6-GII.P7"
gene <1..5059
/gene="ORF1"
CDS <1..5059
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="QCO93068.1"
/translation="GSQNSVNDSINTAPSNKEEVGAFSNIKVGFKKMLGAVPKGTKAP
SSEQYCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTTVQNEHENTPYTV
PPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAAISLATIELTP
ISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLSRRSIS
RTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLLH
LLASCDWTFAGIVETVILMAELFNIFWTPPDVSSFIASLIGDFELQGPEDLAVELVPV
IMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAEM
ETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDIV
GTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAKSIANTM
SGDQRVGLIPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADTCPVTLNCDR
IENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPGQ
PDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHERR
DEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKSVKTLEDLKVALR
DVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALLRLRQARARYYV
SCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEKEVAQGRWEIEPK
DTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDRY
YEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDIRKRRPDDFQ
PKGDLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKGV
KELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILVKRPTGEM
IPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDIV
VAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAPKLSTKTKFW
RSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPPRPAVLEEAK
KTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESFTGPLADQAS
KANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGLM
DSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAMEV
MVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLS
AMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEG
PLVITEDLTGLTFLRRSVARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQ
RATQLMALLGEASLHGPQFYKKVSKMVISEIKSGGLEFYVPRQEAMFRWMRFSDLSTW
EGDRNLAPEGVNEDGVE"
mat_peptide <1..967
/gene="ORF1"
/product="p48"
mat_peptide 968..2065
/gene="ORF1"
/product="NTPase"
mat_peptide 2066..2584
/gene="ORF1"
/product="p22"
mat_peptide 2585..2983
/gene="ORF1"
/product="VPg"
mat_peptide 2984..3526
/gene="ORF1"
/product="Pro"
mat_peptide 3527..5056
/gene="ORF1"
/product="RdRp"
gene 5040..6683
/gene="ORF2"
CDS 5040..6683
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCO93066.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTSRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPVDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGSSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGIGQGRRRAQ"
gene 6683..>7431
/gene="ORF3"
CDS 6683..>7431
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCO93067.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSDPPKIKVNSDSASVYSSASSAPSQST
HSTALTAGSSSSRTTSSSAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKAS
SYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVR"
ORIGIN
1 tggcagccaa aactctgtca atgacagtat caacaccgcc ccttctaata aagaagaggt
61 tggtgcattc tccaacatta aagttggttt taagaaaatg ctgggtgccg ttcccaaggg
121 gaccaaagca cccagtagtg agcagtactg cccctcagtt aagattggga ccaagacatt
181 aacagttccc cctgagcccc caaatggtga agacaccgtg cagtttgatg caaagtcgga
241 aacagtgcgc gggctaccag acttgacaac ggtgcagaat gaacacgaaa acacaccata
301 caccgtcccc ccattgagtg aaagggaaca cagaccagcc actgaaccgc ttcctggcac
361 aatactggag atgtgggatg gtgaattcta ccattactct gtgtacgtca gcggtggcaa
421 agccctaggg gttcacaagc cccctgcagc gataagcctc gcgacgatag agctcacacc
481 catatctctt tattggaggc ccgtttacac ccccaactat ctggtctgtc cagacacgtt
541 gaaaggcctt gctggtgaga agttccccta cacggccttc agcaacaact gttacaactt
601 ctgttgctgg gtgcttgaac tcaatgacac gtggcttagc aggagaagca tctctaggac
661 taccggcttc ttcaaaccat atcagtcttg gaataggaaa ccccttccaa ccgttgatga
721 tggaaagatc aagaaggtgg ccaacgcaat tctctgcgca cttggatcac tgttttcaaa
781 accaatcaag gacctattgg gcaaactcaa accattgaac ctgctgcact tgctcgcatc
841 atgtgactgg acgttcgcgg gcatagtaga gacagtcatc ctaatggcgg aacttttcaa
901 catcttttgg acaccgccag atgtttccag tttcatagcc tccctgatag gtgattttga
961 attgcaaggg cctgaggacc tggctgtgga gcttgtcccc gtgatcatgg gtggcatagg
1021 aatggttctc ggctttactg ctgagaagat aggccgcatg ctgtcgtccg ctgcatcaac
1081 actacgggca tgcaaagact tggggaatta tgcccttgac atattgaaac tggttatgaa
1141 gtggttcttc ccaaagaaag aagagaaagc cgagatggaa accctaaggg cgattgagga
1201 tgccgtcctg gacatggaag ctataggaaa taaccatctc acaaccctcc tcaaggacaa
1261 ggatagcctc acggctttca tgaagactct agatctagaa gaggagaagg caaggaagct
1321 gtccaccaaa tcatcctcgc cagacatcgt cggcactatt aatgccatac tggccagaat
1381 agctgctgcc aggtccctct tgcacaaggc taaagaagaa atgtttagca ggattagacc
1441 cgtggttgtc atgatatcgg gtagacctgg cattggcaaa acccacatgg caagacactt
1501 ggctaagagt atcgccaaca ccatgagcgg cgaccagaga gtaggactca tcccacgcaa
1561 cggggtcgat cattgggacg cctacagggg agagagggtg gtcttatggg atgattatgg
1621 catgggaaac cctgtcaaag atgccctaac actgcaagag ttggccgaca cctgcccagt
1681 aactctaaac tgtgatagga tcgagaacaa ggggaagatg tttgacagtg atgtcatcat
1741 aatcacgacc aatctagtca acccggcgcc cctcgattat gtaaacttcg aggcgtgctc
1801 cagaagggtc gactttctgg tctatgcaga gtcaccagaa attgagaagg ttaagagaga
1861 tttccccggc caacctgaca tgtggaagga ccattttaag ccagactttt cccacataaa
1921 actgacccta gccccacagg gtggatttga caagaatggc aacaccccgc atggtaaggg
1981 caccatgcga tccctaaccc agggttccct gactgcaagg gttgcaggtc ttgttcatga
2041 gaggagagac gagtttcagc tccaggggaa cgaccttcaa acatacaact ttgacaccaa
2101 cagggtctct gcatttagga agctggccgc agacaacaag tatgggatca tggagactat
2161 gagagtgggc acagcgctta agagtgtcaa gaccttggag gatctgaaag ttgcactgag
2221 ggatgtgaag ttcaatgagt gtgagataat ttacagaaac tccaaatacc gagtctcttc
2281 caatggtaaa ggttctgtct ctgttgacaa agttgaggac caaacatccc agactgcaaa
2341 cgaagtgggt gcagcactcc ttagactcag gcaggcaaga gccagatact atgtcagctg
2401 cttccaagat ctcgtttaca ctctaataca ggtcgccgga gcatcattcg ttgtcaacag
2461 gatctctaaa aggttctgct gggagagatg ggtcaaacca accgagaccc aggaaacgag
2521 tgaatccgaa aaggaagtgg cccaaggcag atgggagatt gagcccaagg acacagagcc
2581 agaaggtaag aagggtaaga acaagaaagg aagaggcaag aaacacacag ctttctccag
2641 taaaggcctg agtgatgagg agtatgacga gttcaagaga atcagagaag aaaggaacgg
2701 aaaatactcc attgaggaat acctgcaaga ccgggatcgc tactatgagg aagtggcagt
2761 tgcccgggcg acagaggagg acttctgtga agaggaggag gccaagataa gacaaagaat
2821 ctttcgcccc acgaagaaac agaggaagga agaaaggggg gtgcttggtt tggtcactgg
2881 ctcagacatc aggaagagaa gaccagacga ttttcaaccg aagggtgacc tgtgggcaga
2941 cgataccagg agtgtggact acaacgagag acttgatttc gaggcgcctc cgagtgtctg
3001 gtcgagaata gtcccattgg gcactggctg gggcttctgg gtctcatcaa acctcctgat
3061 cacaacaaca cacgtcctgc ctaagggggt taaggaactt tttggagttg aaatcaaaca
3121 gattcaaatc cataagtctg gagagttctg caggttcagg ttcccgagac caattagacc
3181 agatgtcaca gggctcgtgt tggaggaagg cgctccagaa ggcactgtct gctccatact
3241 cgtaaagaga cctacaggtg agatgatccc cttggcagtg aggatgggca cgcatgcatc
3301 tatgaaaata cagggtagga ccgtcggtgg ccagatggga atgctcctca caggggcaaa
3361 tgcgaagaac atggatcttg gtaccggtcc tggtgactgc ggttgccctt acatctacaa
3421 acgtggcaat gacatagttg tcgcgggtgt ccacaccgca gcagcccggg gaggcaacac
3481 tgttatatgt gccactcaag ggcaagatgg ggaagcagtc cttgagggaa atgagaacct
3541 tggcacttac tgcggtgccc caatcttggg tccaggcaag gcgcccaaac ttagcacgaa
3601 gaccaagttc tggcgctcat caccagacgc tttgccgcca ggcacttatg agcctgccta
3661 cttgggaggt aaggacccca gagtggaaaa aggaccatct ctgcagcaag tcatgaggga
3721 ccagctaaaa cctttcacag aacccagggg caagccacct agacctgcag tcttagaaga
3781 ggccaaaaag acagtgatga atgttctaga gcaaaccatt gaccctgcta agccgtggac
3841 ctattcccaa gcatgtgcct cactggacaa gaccacttcc agtggtagcc cccatcatgt
3901 caggaaaaat gaccattgga atggggaatc cttcactggc ccccttgcag accaagcatc
3961 caaagccaac ctcatgtacg agcaggccaa acatgtgcag cccgtgtaca cggccgcact
4021 taaagatgaa ctagtcaaaa ctgacaagat ctacaagaag ataaagaaaa ggctcttgtg
4081 ggggtcggat cttggcacaa tgatcaggtg tgccagggcc tttggcggtc tcatggatag
4141 catgaaggca agttgcatag ccctcccatg tagggtagga atgaacatga atgaagatgg
4201 tcccatcata tttgacaaac attctaagta taggtatcat tatgatgctg actattccag
4261 gtgggactca acccagcaaa ggagcattct ctcggccgct atggaagtga tggtgcggtt
4321 ctctgccgaa ccagagctgg cacaggtggt tgcagaggac ctcctggcac ccagccaact
4381 agatgttggc gatttcgtca tctcagtcca ggagggtctg ccatcagggg ttccatgcac
4441 atcacaatgg aattcaatag cacactggat cctaaccttg agtgcaatgg cagaagtgtc
4501 gggtctctca ccagatgttg ttcaagccca ctcctgtttc tcattctacg gtgatgatga
4561 gatcgtcagc actgacatca accttgatcc catgaagttg acacagaaac tcagagagta
4621 tggcctggtc cccactcgac ctgacaaaac tgagggtccc ctcgtaataa ctgaagacct
4681 caccggccta acgttcctgc gtaggtcagt tgcacgggac ccagctgggt ggtttgggaa
4741 attggaccaa gactcaatcc tcagacagtt gtactggaca aggggcccca atcatgagaa
4801 cccatatgag agcatggtcc ctcattccca gcgggccaca cagcttatgg cccttctcgg
4861 tgaggcttca ctgcatggcc cccagtttta caagaaggtt agcaagatgg tcattagtga
4921 gatcaaaagt ggtggtctgg aattctatgt gcccagacaa gaggccatgt tcagatggat
4981 gagattttct gacctcagca catgggaggg cgatcgcaat cttgctcccg agggtgtgaa
5041 tgaagatggc gtcgaatgac gctgctccat cgaatgatgg tgccgccaac ctcgtaccag
5101 aggccaccaa tgaggttatg gcacttgagc cggtggtggg agcctcaatt gctgctcctg
5161 tcgtcggcca acaaaatata attgacccct ggattagaga aaattttgtt caggcaccac
5221 agggtgagtt tactgtttca ccaaggaact cacctggtga gatgcttcta aatcttgaat
5281 taggccctga gctcaatcct tatctgagtc acttgtcccg catgtataac ggctatgctg
5341 gtggtatgca ggttcaggtg gtcctagctg ggaatgcgtt cacagctggt aaaatcatct
5401 ttgccgccgt cccaccacat tttcctgttg agaacattag tgcagcccaa attacaatgt
5461 gcccccatgt aattgttgat gtaaggcagc ttgagccagt gcttttgccc ctccctgaca
5521 taaggaatag attctttcat tataatcagg aaaacacctc tcggatgaga cttgtggcta
5581 tgttgtacac accccttaga gcaaattctg gtgaggatgt gtttacagtg tcttgcagag
5641 ttttgacccg ccctgccccc gactttgagt tcacgttctt ggtgccacca actgtggagt
5701 caaagactaa gccctttaca ctccctattc taactcttgg agaactgtcc aactccagat
5761 tccccgctcc ggtagacatg ttgtacactg accctaatga ggcaattgtg gtgcaaccac
5821 aaaatggcag gtgcactcta gatggaacac ttcaagggac cacccaactg gtacccaccc
5881 aaatttgctc cttcaggggc acgctaatta gccagacgtc gaggtctgca gattcaacag
5941 attcagcccc acgggtgagg aaccaccctc tccacgttca gctgaagaac ctcgatggga
6001 caccatatga cccaacagat gaggtgccag cagttttggg tgccatagat ttcaaaggaa
6061 ctgtgtttgg ggtcgctagt caaagaaaca ccacagggag ctctatagga gcaacccgcg
6121 cccatgaagt gcacatagat accacaaacc ctagatatac cccaaagctt ggctctgtgt
6181 tgatgtattc tgaatctact gattttgatg atggacaacc cacccgcttt acccccattg
6241 gcatgggagc cgatgattgg caccaatggg aattgcccga gtattctggt caccttactc
6301 ttaacatgaa tttggccccc gcagttgccc ctgctttccc tggtgagcgc attctcttct
6361 tcagatcagt ggtgccatct gctggtggct atggatcagg tcacatagat tgcctcatcc
6421 cacaggagtg ggttcagcat ttctaccagg aggccgctcc atcacagtct gcggtggctc
6481 ttatcagata tgtcaaccct gacactggaa gaaacatctt tgaggcaaaa ctgcatagag
6541 aagggttcat cactgtggca aattctggaa acaaccccat agttgtgccc ccaaatggtt
6601 acttcaggtt tgaggcctgg gtcaatcaat tctacacact cacccccatg ggaattggac
6661 aggggcgcag aagagctcaa taatggcagg agctttctta gctggattgg caggtgacgc
6721 cataacaagt ggtgtcgggt ccctaatcaa tgctggggcc aatgcaatta accaaaaggt
6781 agagtatgat tttaacaaac agctccaatt ggcatccttc aaacatgaca aggagatgtt
6841 gcagtcacaa gtactggcca ctaaacagct ccagcaggaa atgatgaaca taaggcaagg
6901 ggtcttgtcc gctggcggct tttcccctac agatgccgcg agaggtgctg tgaacgcgcc
6961 gatgacaaaa attttggatt ggaatggaac aaggtacttc gccccaaata gtatgaagac
7021 aaccagttat tcgggccagt tttccagcaa ccctgtacat aggcaaccca ctttaccccg
7081 ttctgacccc ccaaaaatca aggttaatag tgattctgct agtgtgtata gttctgcatc
7141 ttctgctcct tcacaatcaa cccactcaac ggctttgact gcggggtcta gctcatctag
7201 gacaacatcc tcttctgcag cttccactct atctagaacc agtgactggg tgagaggaca
7261 aaatgagagg cttagcccgt ttatggatgg tgctctccaa acaacttttg tcacaccacc
7321 atcgagcaag gcttcatcat atgggtcggt ctcaaccgtt cccaaagctg ttttggactc
7381 ctggactcct atgttcaata cccataggca gcctctcttc gctcatgtgc g
//