Typing tool
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Typing tool
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Complete norovirus genomes
| MK864096 | GII.2 | |
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| GII.P16 |
ORF1: 1..704
ORF2: 685..2313
ORF3: 2313..3092
LOCUS MK864096 3112 bp RNA linear VRL 07-MAY-2019
DEFINITION Norovirus GII isolate Hu/GIIP16_GII.2/CGMH1422/2018/TW
nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds;
and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MK864096
VERSION MK864096.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3112)
AUTHORS Lee,C.C., Chiu,C.H., Tsai,C.N., Chang,Y.C. and Chen,S.Y.
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2019) Graduate Institute of Clinical Medical
Science, College of Medicine, Chang Gung University, Wen-Hwa 1st
Road, Taoyuan County, Kwei-Shan 333, Taiwan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3112
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GIIP16_GII.2/CGMH1422/2018/TW"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Taiwan"
/collection_date="20-Feb-2018"
/note="genotype: GIIP16_GII.2"
gene <1..704
/gene="ORF1"
CDS <1..704
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="QCH39947.1"
/translation="DLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCAL
SEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDKTEGPL
IISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMNWTRGPNHEDPNETMIPHSQRP
IQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEG
DRNLAPNFVNEDGVE"
mat_peptide <1..701
/gene="ORF1"
/product="RdRp"
gene 685..2313
/gene="ORF2"
CDS 685..2313
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCH39948.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFPVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLRDDEHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VISQRDKHNGPGQNEPANRGHDAVVPTHTAKYTPKLGQIQIGTWQTDDITVNQPVKFT
PIGLNDIEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSHIPLKGGYGDPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 2313..3092
/gene="ORF3"
CDS 2313..3092
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCH39949.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQKVEFDFNQKLQEN
SFNHDKEMLQAQIQATKQLQAHMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTFYSGKFTSTAPVRQADFQHTQNRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTAPKGVLDSWTPAFNNRRQPLFAHLRKRGESQA"
ORIGIN
1 aggatctgct ggcccctagt gtagtagatg taggagactt taaaattaca ataaatgaag
61 ggctcccttc tggtgtgcca tgcacttctc aatggaattc catcgcacac tggctgctaa
121 ctctctgtgc cttgtctgaa gtcaccaaac tgtcccctga cattatacag gcaaattcca
181 tgttctcatt ttacggtgat gacgagattg tcagcaccga cataaaattg gaccctgaac
241 aattaaccgc caaattgaag gagtacggcc tgaaaccaac ccgcccagac aaaaccgagg
301 gacccctgat tatcagtgag gatttgaacg gtctcacttt cctccgaagg acggtgactc
361 gtgacccagc tggctggttt ggaaaactgg accaaagctc aattttgagg cagatgaact
421 ggactagagg accaaatcat gaagacccca atgagacaat gataccccat tctcaaagac
481 ccatacagct catggcactg cttggtgaag cctctcttca cggaccctct ttctacagta
541 aaatcagtaa attggtcata actgaactca aagaaggtgg gatggacttt tacgtgccaa
601 ggcaggaacc catgttcagg tggatgaggt tttctgactt gagcacgtgg gagggcgatc
661 gcaatctggc tcccaatttt gtgaatgaag atggcgtcga atgacgccgc tccatctact
721 gatggtgcag ccggcctcgt gccagaaagt aacaatgagg tcatggctct tgaacccgtg
781 gctggtgccg ccttggcagc cccggtcacc ggtcaaacaa atattataga cccttggatt
841 agagcaaatt ttgtccaggc ccccaatggt gaatttacag tctctccccg aaatgcccct
901 ggtgaagtgc tattaaatct agaattgggt ccagaattaa atccttatct ggcacattta
961 gcaagaatgt acaacgggta tgccggtggg atggaggtgc aggtcatgtt ggctgggaac
1021 gcgttcacag ccggcaagtt ggtcttcgcc gccgtgcctc ctcacttccc ggttgaaaac
1081 cttagcccac agcaaatcac catgttccct catgtgatca tagatgtgag aaccttggaa
1141 cctgttttat taccactccc tgatgttagg aataatttct tccattataa tcagaaagat
1201 gatcccaaga tgaggattgt ggctatgctt tatacccccc tcaggtctaa tggttcaggt
1261 gatgatgtgt ttccagtctc ctgtagagtg ttgactagac cttcccctga ctttgacttc
1321 acgtacctgg tgccaccaac agtggagtct aaaacaaagc cattcaccct cccaatcctc
1381 acacttgggg aactatccaa ttctaggttc ccagtgtcca tagaccagat gtacaccagc
1441 cctaatgaag ttatatcagt gcagtgtcaa aatggtaggt gcacactgga cggggagctc
1501 caagggacaa cacaactcca agtcagtggc atctgtgctt tcaaaggtga ggtgaccgcc
1561 cacttgcgtg acgatgaaca cctatataat gttaccatca caaacttgaa tgggtcccct
1621 tttgatccct ccgaggacat ccctgcccct ctgggtgtgc ctgacttcca gggaagggtt
1681 tttggtgtca tctctcaaag agacaaacac aatggtcctg gacaaaatga accagcaaat
1741 aggggacacg acgctgtggt ccctactcac acagcaaagt acactccaaa actgggacaa
1801 attcaaattg gcacatggca gactgacgac attacagtca accaaccagt caaattcacc
1861 ccaattggac tcaatgacat tgaacatttt aatcaatggg tggtccctag gtatgctggt
1921 gccctaaacc tcaatacaaa ccttgcccct tctgttgctc cagtatttcc aggagagcgc
1981 ttgctcttct tcagatcaca cattcccctc aaaggtggtt atggagaccc agccattgat
2041 tgcttactac cacaagagtg ggtgcaacac ttctatcagg aagcagcccc ttcaatgagt
2101 gaggtggccc tcgtcaggta catcaacccg gacactggtc gggcactgtt tgaggccaag
2161 ctccacagag ctggtttcat gacagtctcg agcaacacca gtgccccggt ggttgtgcct
2221 gccaacggtt acttcagatt tgattcttgg gtgaatcaat tctattctct cgcccccatg
2281 ggaactggga atgggcgtag aagggttcaa taatggctgg agcttttgta gctggtcttg
2341 caggggacgt gctcagcaat gggcttagtt cattaatcaa tgcaggtgca aatgcaataa
2401 atcagaaggt agaatttgat tttaatcaga aattgcagga aaattctttt aatcatgata
2461 aggagatgtt gcaggctcag attcaggcaa ctaagcagct gcaggcacac atgatggcta
2521 taaagcaagg ggtcttgacc gctggcggct tttcccctgc tgatgcagcc agaggtgctg
2581 tgaacgcgcc catgacacag gcgctggact ggaatggcac aaggtattgg gcaccaaact
2641 ccatgaggac cacattttat tctggaaaat tcacatcaac cgccccagtg aggcaggctg
2701 acttccagca cacccaaaac cggccctcga gtggctcctc tgtgtcttcc ttcgccactc
2761 agtcttcaag gccaactctg accacaacca ctggttcctc acatggcaca gcctcatcaa
2821 attcaactcg cagcacaagc ctctcccaat caacggtctc cagagctaca tctaggactg
2881 gtgagtgggt tagagatcaa aatagaaact tggaacccta catgcatggt gccttacaga
2941 cagcctttgt caccccacct tccagcaggg catctgacgg gacagtctca accgccccga
3001 aaggtgtttt ggactcctgg acacctgcgt ttaacaaccg caggcagccg ctttttgcac
3061 acctccgcaa gaggggggag tcacaagctt agtgaaaagg tgaaaattta tt
//